Wall clock time and date at job start Tue Mar 31 2020 14:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00371 * 2 1 4 4 H 1.48498 * 109.47245 * 239.99615 * 3 2 1 5 5 H 1.48499 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47461 * 119.99614 * 3 2 1 7 7 C 1.37879 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00117 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99468 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.43364 * 32.46397 * 11 10 9 13 13 C 1.54629 * 110.48255 * 155.00059 * 11 10 9 14 14 C 1.54482 * 101.76448 * 93.88165 * 13 11 10 15 15 N 1.46770 * 105.47425 * 25.41149 * 14 13 11 16 16 C 1.39969 * 124.34854 * 162.97878 * 15 14 13 17 17 C 1.38888 * 120.04728 * 174.00083 * 16 15 14 18 18 C 1.38103 * 119.96388 * 179.77483 * 17 16 15 19 19 C 1.38378 * 120.07164 * 0.50469 * 18 17 16 20 20 Cl 1.73595 * 119.94977 * 179.76687 * 19 18 17 21 21 C 1.38478 * 120.09901 * 359.75085 * 19 18 17 22 22 Cl 1.73604 * 119.97957 * 180.02562 * 21 19 18 23 23 C 1.38236 * 120.03737 * 359.97438 * 21 19 18 24 24 C 1.34418 * 111.29617 * 342.98721 * 15 14 13 25 25 O 1.21296 * 124.93758 * 180.44496 * 24 15 14 26 26 H 0.97003 * 119.99779 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46989 * 300.00042 * 9 7 2 28 28 H 1.09002 * 109.46555 * 59.99906 * 9 7 2 29 29 H 1.00893 * 111.00120 * 303.95430 * 10 9 7 30 30 H 1.08997 * 110.97125 * 211.99421 * 13 11 10 31 31 H 1.09004 * 110.97365 * 335.73073 * 13 11 10 32 32 H 1.08999 * 110.24911 * 144.41571 * 14 13 11 33 33 H 1.09004 * 110.24410 * 266.41789 * 14 13 11 34 34 H 1.08001 * 120.01726 * 0.02921 * 17 16 15 35 35 H 1.08001 * 119.95968 * 180.23594 * 18 17 16 36 36 H 1.07998 * 120.03849 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5051 -4.9071 -0.0001 12 1 0.5663 -4.8305 -0.5486 13 6 2.4013 -6.0085 -0.6123 14 6 3.0696 -6.6061 0.6458 15 7 2.1431 -6.3298 1.7501 16 6 2.1778 -6.9769 2.9907 17 6 1.3390 -6.5601 4.0162 18 6 1.3713 -7.2028 5.2381 19 6 2.2459 -8.2550 5.4452 20 17 2.2881 -9.0567 6.9843 21 6 3.0872 -8.6695 4.4264 22 17 4.1827 -9.9903 4.6893 23 6 3.0544 -8.0329 3.1998 24 6 1.2571 -5.3755 1.4168 25 8 0.3858 -4.9512 2.1463 26 1 -0.4850 0.8401 -0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8403 -3.5487 -0.7808 30 1 1.8010 -6.7578 -1.1282 31 1 3.1453 -5.5782 -1.2827 32 1 3.2046 -7.6811 0.5266 33 1 4.0293 -6.1227 0.8287 34 1 0.6589 -5.7363 3.8568 35 1 0.7163 -6.8810 6.0342 36 1 3.7109 -8.3559 2.4053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573200272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:06 Heat of formation + Delta-G solvation = -10.978968 kcal Electronic energy + Delta-G solvation = -22612.766427 eV Core-core repulsion = 18955.640176 eV Total energy + Delta-G solvation = -3657.126251 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16615 -39.09573 -36.80002 -36.72270 -36.57995 -35.12352 -32.88488 -31.39973 -31.16082 -28.87239 -27.51370 -25.49103 -23.67669 -23.15026 -21.78999 -21.33197 -19.74002 -17.94944 -16.97919 -16.69250 -16.33044 -16.00356 -15.43024 -14.89079 -14.67661 -14.55673 -14.20794 -14.08160 -13.83171 -13.56550 -13.34495 -12.88643 -12.36394 -12.32826 -12.09121 -12.06221 -11.91454 -11.73465 -11.48215 -11.26794 -11.16026 -11.08030 -10.75024 -10.67923 -10.06287 -9.98515 -9.65703 -9.23049 -9.16032 -8.54797 -8.05058 -7.62036 -6.07380 -4.10764 0.77063 0.86978 1.62877 1.99365 2.59580 2.73062 3.30482 3.35217 3.37417 3.39812 4.23636 4.33222 4.38674 4.48191 4.70881 4.79227 4.84540 4.92488 5.15911 5.25666 5.28586 5.35043 5.37075 5.51823 5.68904 5.70198 5.82036 5.88800 5.95083 6.18185 6.73336 6.92594 7.08474 7.27151 7.64567 8.01097 8.14752 8.17520 8.40420 8.96416 9.53963 11.03516 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002703 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.286687 B =10354.912435 C =10982.708567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.669 5.669 11 C 0.056 3.944 12 H 0.082 0.918 13 C -0.135 4.135 14 C 0.103 3.897 15 N -0.559 5.559 16 C 0.201 3.799 17 C -0.144 4.144 18 C -0.065 4.065 19 C -0.066 4.066 20 Cl -0.059 7.059 21 C 0.000 4.000 22 Cl -0.052 7.052 23 C -0.149 4.149 24 C 0.538 3.462 25 O -0.493 6.493 26 H 0.263 0.737 27 H 0.038 0.962 28 H -0.008 1.008 29 H 0.341 0.659 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.146 0.854 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -20.981 4.865 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.304 5.304 11 C -0.058 4.058 12 H 0.100 0.900 13 C -0.173 4.173 14 C -0.019 4.019 15 N -0.282 5.282 16 C 0.104 3.896 17 C -0.164 4.164 18 C -0.085 4.085 19 C -0.094 4.094 20 Cl -0.030 7.030 21 C -0.029 4.029 22 Cl -0.023 7.023 23 C -0.171 4.171 24 C 0.327 3.673 25 O -0.364 6.364 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.009 0.991 29 H 0.160 0.840 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.189 0.811 35 H 0.164 0.836 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.137 -20.753 6.048 22.470 hybrid contribution 0.288 0.684 -0.692 1.015 sum 6.425 -20.068 5.357 21.742 Atomic orbital electron populations 1.69956 1.06088 1.27053 1.50153 1.24979 0.94881 0.99385 0.95166 0.86526 0.79418 0.82599 0.78641 1.20231 1.21277 1.20129 1.21061 0.93400 0.90054 1.51313 0.91965 1.19731 0.90390 0.86670 0.96618 1.60555 1.21023 0.99325 1.49465 1.22139 0.98996 0.92896 0.91736 0.89988 1.22880 0.99858 0.98135 0.96462 1.22229 0.93338 1.01256 0.85086 1.45945 1.32572 1.37718 1.12007 1.17718 0.95064 0.91538 0.85247 1.21833 1.01142 1.02389 0.91064 1.20954 0.96808 0.92966 0.97741 1.20661 1.01495 0.99355 0.87928 1.98368 1.97931 1.78986 1.27680 1.20340 0.95046 0.93405 0.94059 1.98382 1.61751 1.45525 1.96602 1.20502 1.02576 0.97329 0.96716 1.21308 0.79196 0.76762 0.90066 1.90604 1.33019 1.56555 1.56245 0.92719 0.94402 0.99070 0.83953 0.89526 0.88169 0.89937 0.89518 0.81138 0.83623 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.36 9.32 -34.44 -0.32 -14.68 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.19 4.88 5.29 -4.98 -0.03 4.85 16 10 N -0.67 -12.98 6.34 -108.00 -0.68 -13.67 16 11 C 0.06 0.89 3.26 -67.72 -0.22 0.67 16 12 H 0.08 1.35 7.82 -51.93 -0.41 0.95 16 13 C -0.14 -1.33 6.84 -25.10 -0.17 -1.50 16 14 C 0.10 0.99 6.51 -3.12 -0.02 0.97 16 15 N -0.56 -7.62 3.14 -112.26 -0.35 -7.97 16 16 C 0.20 2.66 6.60 -83.68 -0.55 2.11 16 17 C -0.14 -2.01 9.29 -39.39 -0.37 -2.37 16 18 C -0.07 -0.77 9.82 -39.58 -0.39 -1.16 16 19 C -0.07 -0.76 6.32 -39.44 -0.25 -1.01 16 20 Cl -0.06 -0.62 27.95 -51.86 -1.45 -2.07 16 21 C 0.00 0.00 6.32 -39.49 -0.25 -0.25 16 22 Cl -0.05 -0.52 27.95 -51.86 -1.45 -1.97 16 23 C -0.15 -1.64 9.20 -39.36 -0.36 -2.00 16 24 C 0.54 9.31 7.54 -10.86 -0.08 9.23 16 25 O -0.49 -10.29 14.79 5.54 0.08 -10.21 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.04 1.10 8.12 -51.93 -0.42 0.68 16 28 H -0.01 -0.23 8.07 -51.93 -0.42 -0.64 16 29 H 0.34 5.86 8.04 -39.30 -0.32 5.54 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.84 7.56 -51.93 -0.39 0.44 16 32 H 0.08 0.56 7.23 -51.93 -0.38 0.18 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.17 2.78 5.26 -52.49 -0.28 2.50 16 35 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.14 1.24 6.74 -52.49 -0.35 0.89 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -31.91 335.40 -9.97 -41.87 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.77 Total: 2.04 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.11 Total: -3.61 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.30 Total: -47.50 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -2.90 Total: -4.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.91 -9.97 -41.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573200272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.894 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds