Wall clock time and date at job start Tue Mar 31 2020 14:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00371 * 2 1 4 4 H 1.48498 * 109.47245 * 239.99615 * 3 2 1 5 5 H 1.48499 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47461 * 119.99614 * 3 2 1 7 7 C 1.37879 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00117 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99468 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.43364 * 32.46397 * 11 10 9 13 13 C 1.54629 * 110.48255 * 155.00059 * 11 10 9 14 14 C 1.54482 * 101.76448 * 93.88165 * 13 11 10 15 15 N 1.46770 * 105.47425 * 25.41149 * 14 13 11 16 16 C 1.39969 * 124.34854 * 162.97878 * 15 14 13 17 17 C 1.38888 * 120.04728 * 174.00083 * 16 15 14 18 18 C 1.38103 * 119.96388 * 179.77483 * 17 16 15 19 19 C 1.38378 * 120.07164 * 0.50469 * 18 17 16 20 20 Cl 1.73595 * 119.94977 * 179.76687 * 19 18 17 21 21 C 1.38478 * 120.09901 * 359.75085 * 19 18 17 22 22 Cl 1.73604 * 119.97957 * 180.02562 * 21 19 18 23 23 C 1.38236 * 120.03737 * 359.97438 * 21 19 18 24 24 C 1.34418 * 111.29617 * 342.98721 * 15 14 13 25 25 O 1.21296 * 124.93758 * 180.44496 * 24 15 14 26 26 H 0.97003 * 119.99779 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46989 * 300.00042 * 9 7 2 28 28 H 1.09002 * 109.46555 * 59.99906 * 9 7 2 29 29 H 1.00893 * 111.00120 * 303.95430 * 10 9 7 30 30 H 1.08997 * 110.97125 * 211.99421 * 13 11 10 31 31 H 1.09004 * 110.97365 * 335.73073 * 13 11 10 32 32 H 1.08999 * 110.24911 * 144.41571 * 14 13 11 33 33 H 1.09004 * 110.24410 * 266.41789 * 14 13 11 34 34 H 1.08001 * 120.01726 * 0.02921 * 17 16 15 35 35 H 1.08001 * 119.95968 * 180.23594 * 18 17 16 36 36 H 1.07998 * 120.03849 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5051 -4.9071 -0.0001 12 1 0.5663 -4.8305 -0.5486 13 6 2.4013 -6.0085 -0.6123 14 6 3.0696 -6.6061 0.6458 15 7 2.1431 -6.3298 1.7501 16 6 2.1778 -6.9769 2.9907 17 6 1.3390 -6.5601 4.0162 18 6 1.3713 -7.2028 5.2381 19 6 2.2459 -8.2550 5.4452 20 17 2.2881 -9.0567 6.9843 21 6 3.0872 -8.6695 4.4264 22 17 4.1827 -9.9903 4.6893 23 6 3.0544 -8.0329 3.1998 24 6 1.2571 -5.3755 1.4168 25 8 0.3858 -4.9512 2.1463 26 1 -0.4850 0.8401 -0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8403 -3.5487 -0.7808 30 1 1.8010 -6.7578 -1.1282 31 1 3.1453 -5.5782 -1.2827 32 1 3.2046 -7.6811 0.5266 33 1 4.0293 -6.1227 0.8287 34 1 0.6589 -5.7363 3.8568 35 1 0.7163 -6.8810 6.0342 36 1 3.7109 -8.3559 2.4053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573200272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:06 Heat of formation + Delta-G solvation = -31.725685 kcal Electronic energy + Delta-G solvation = -22613.666072 eV Core-core repulsion = 18955.640176 eV Total energy + Delta-G solvation = -3658.025896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.28014 -40.11500 -37.95261 -37.71315 -37.57146 -36.58264 -34.71177 -32.78222 -32.10502 -29.96825 -28.97871 -27.11399 -24.63279 -24.27710 -23.67058 -22.32084 -20.89542 -19.02758 -18.57501 -18.01901 -17.57719 -17.07793 -16.73695 -16.47899 -16.01883 -15.78107 -15.28585 -15.10044 -14.98091 -14.81949 -14.59657 -14.26398 -13.98761 -13.54183 -13.38327 -13.09863 -12.97221 -12.91943 -12.80674 -12.66104 -12.31981 -12.29753 -12.10930 -11.96800 -11.88317 -11.34559 -11.00143 -10.89437 -10.66827 -10.07541 -9.30501 -9.05717 -8.23334 -6.35658 -0.23394 -0.06325 0.74180 1.06859 1.34281 1.41088 1.44976 1.52766 1.71605 2.38079 2.40878 3.10372 3.18513 3.36795 3.57165 3.60560 3.83414 3.88783 3.95488 4.17140 4.27438 4.46287 4.50822 4.51680 4.66653 4.88525 4.95104 4.96067 5.00281 5.09194 5.18472 5.23670 5.56370 5.68337 5.86732 5.96570 6.30037 6.64392 6.85406 6.90788 7.35377 8.88352 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002703 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.286687 B =10354.912435 C =10982.708567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.211 3.789 10 N -0.666 5.666 11 C 0.047 3.953 12 H 0.066 0.934 13 C -0.116 4.116 14 C 0.095 3.905 15 N -0.553 5.553 16 C 0.182 3.818 17 C -0.166 4.166 18 C -0.064 4.064 19 C -0.067 4.067 20 Cl -0.049 7.049 21 C -0.004 4.004 22 Cl -0.035 7.035 23 C -0.130 4.130 24 C 0.524 3.476 25 O -0.547 6.547 26 H 0.265 0.735 27 H -0.011 1.011 28 H -0.031 1.031 29 H 0.356 0.644 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 -22.766 4.156 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.183 1.183 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.083 3.917 10 N -0.301 5.301 11 C -0.067 4.067 12 H 0.084 0.916 13 C -0.154 4.154 14 C -0.025 4.025 15 N -0.275 5.275 16 C 0.086 3.914 17 C -0.186 4.186 18 C -0.084 4.084 19 C -0.096 4.096 20 Cl -0.020 7.020 21 C -0.032 4.032 22 Cl -0.006 7.006 23 C -0.152 4.152 24 C 0.313 3.687 25 O -0.423 6.423 26 H 0.073 0.927 27 H 0.007 0.993 28 H -0.013 1.013 29 H 0.178 0.822 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.115 0.885 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 9.251 -22.597 5.322 24.991 hybrid contribution -0.652 1.091 -0.380 1.327 sum 8.598 -21.506 4.943 23.682 Atomic orbital electron populations 1.70113 1.08024 1.28092 1.51294 1.26008 0.95745 1.03629 0.94555 0.85356 0.78048 0.77417 0.79296 1.18324 1.21101 1.19617 1.21502 0.93985 0.91114 1.50863 0.91068 1.19233 0.90486 0.88717 0.93222 1.60247 1.20100 0.99412 1.50375 1.22250 0.99711 0.92978 0.91734 0.91577 1.22941 0.99363 0.96223 0.96878 1.22654 0.92566 1.04068 0.83224 1.45963 1.32045 1.36441 1.13032 1.17852 0.95949 0.92617 0.84943 1.21679 1.01779 1.02497 0.92691 1.21012 0.97107 0.92932 0.97302 1.20753 1.01231 0.99067 0.88554 1.98373 1.97875 1.78660 1.27061 1.20475 0.95021 0.93709 0.94001 1.98392 1.61057 1.44622 1.96550 1.20699 1.01520 0.95643 0.97301 1.21637 0.79292 0.77381 0.90397 1.90581 1.35457 1.58602 1.57667 0.92659 0.99262 1.01321 0.82224 0.86654 0.85800 0.85679 0.88526 0.84237 0.82461 0.80648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.54 -30.27 9.32 25.60 0.24 -30.03 16 8 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 9 C 0.21 11.30 5.29 85.56 0.45 11.75 16 10 N -0.67 -26.25 6.34 -495.61 -3.14 -29.39 16 11 C 0.05 1.50 3.26 44.91 0.15 1.65 16 12 H 0.07 2.31 7.82 -2.39 -0.02 2.29 16 13 C -0.12 -1.93 6.84 31.65 0.22 -1.71 16 14 C 0.09 1.48 6.51 86.83 0.57 2.05 16 15 N -0.55 -14.55 3.14 -627.65 -1.97 -16.52 16 16 C 0.18 4.69 6.60 38.14 0.25 4.94 16 17 C -0.17 -4.83 9.29 22.39 0.21 -4.62 16 18 C -0.06 -1.53 9.82 22.27 0.22 -1.31 16 19 C -0.07 -1.48 6.32 22.36 0.14 -1.33 16 20 Cl -0.05 -0.96 27.95 -2.72 -0.08 -1.04 16 21 C 0.00 -0.08 6.32 22.33 0.14 0.07 16 22 Cl -0.04 -0.61 27.95 -2.72 -0.08 -0.69 16 23 C -0.13 -2.50 9.20 22.41 0.21 -2.29 16 24 C 0.52 18.88 7.54 87.90 0.66 19.54 16 25 O -0.55 -24.98 14.79 -3.08 -0.05 -25.03 16 26 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 27 H -0.01 -0.68 8.12 -2.39 -0.02 -0.70 16 28 H -0.03 -1.75 8.07 -2.39 -0.02 -1.77 16 29 H 0.36 11.92 8.04 -89.70 -0.72 11.20 16 30 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.12 1.53 7.56 -2.38 -0.02 1.51 16 32 H 0.13 0.97 7.23 -2.39 -0.02 0.95 16 33 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.14 5.05 5.26 -2.91 -0.02 5.03 16 35 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.18 2.17 6.74 -2.91 -0.02 2.15 16 Total: -1.00 -74.76 335.40 1.33 -73.43 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.42 Total: 11.33 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 3.91 Total: -0.92 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -4.83 Total: -103.30 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.15 Total: -1.72 kcal Total: -74.76 1.33 -73.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573200272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.709 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds