Wall clock time and date at job start Tue Mar 31 2020 15:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39728 * 120.20496 * 169.32666 * 3 2 1 5 5 C 1.37793 * 119.92005 * 180.27006 * 4 3 2 6 6 C 1.38567 * 120.34449 * 359.72697 * 5 4 3 7 7 C 1.38015 * 120.42473 * 359.97438 * 6 5 4 8 8 C 1.38882 * 120.06676 * 0.02562 * 7 6 5 9 9 N 1.39034 * 120.17101 * 179.97438 * 8 7 6 10 10 S 1.65602 * 119.99994 * 35.63732 * 9 8 7 11 11 O 1.42098 * 106.39957 * 177.55333 * 10 9 8 12 12 O 1.42106 * 106.39766 * 310.46763 * 10 9 8 13 13 C 1.76192 * 107.21872 * 64.00871 * 10 9 8 14 14 C 1.38657 * 119.87737 * 269.73059 * 13 10 9 15 15 C 1.38619 * 120.50115 * 179.72542 * 14 13 10 16 16 C 1.37639 * 120.24806 * 0.54774 * 15 14 13 17 17 C 1.40702 * 119.74344 * 359.72373 * 16 15 14 18 18 C 1.41395 * 120.24255 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99779 * 204.04834 * 18 17 16 20 20 C 1.39942 * 119.99815 * 24.04375 * 18 17 16 21 21 N 1.30824 * 120.00132 * 15.58122 * 20 18 17 22 22 Si 1.86803 * 120.00084 * 195.57377 * 20 18 17 23 23 H 1.48509 * 109.46719 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47204 * 119.99978 * 22 20 18 25 25 H 1.48500 * 109.47249 * 240.00701 * 22 20 18 26 26 C 1.37603 * 119.87606 * 90.00195 * 13 10 9 27 27 H 1.08002 * 120.04275 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.82871 * 179.74435 * 5 4 3 29 29 H 1.08004 * 119.78951 * 180.02562 * 6 5 4 30 30 H 1.07991 * 119.96719 * 179.97438 * 7 6 5 31 31 H 0.97001 * 119.99968 * 215.63326 * 9 8 7 32 32 H 1.08006 * 119.74776 * 359.97438 * 14 13 10 33 33 H 1.08005 * 119.87201 * 180.25184 * 15 14 13 34 34 H 1.07997 * 120.12701 * 179.75241 * 16 15 14 35 35 H 0.96999 * 119.99588 * 179.97438 * 21 20 18 36 36 H 1.08000 * 120.12623 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 1.1876 -0.2237 5 6 4.6484 1.1805 -0.2279 6 6 5.3430 0.0022 -0.0058 7 6 4.6636 -1.1772 0.2228 8 6 3.2748 -1.1899 0.2309 9 7 2.5882 -2.3768 0.4603 10 16 3.1962 -3.4932 1.5217 11 8 2.2489 -4.5509 1.5779 12 8 4.5576 -3.6874 1.1636 13 6 3.2031 -2.7460 3.1174 14 6 4.3185 -2.0426 3.5458 15 6 4.3357 -1.4448 4.7964 16 6 3.2473 -1.5534 5.6319 17 6 2.1121 -2.2697 5.2098 18 6 0.9879 -2.3875 6.0593 19 1 0.3028 -3.2133 5.9369 20 6 0.7632 -1.4340 7.0587 21 7 1.3941 -0.2885 7.0237 22 14 -0.4378 -1.7969 8.4427 23 1 -1.0157 -3.1519 8.2540 24 1 0.2749 -1.7400 9.7442 25 1 -1.5271 -0.7876 8.4302 26 6 2.1037 -2.8676 3.9359 27 1 2.7341 2.1087 -0.3977 28 1 5.1898 2.0980 -0.4051 29 1 6.4230 0.0070 -0.0107 30 1 5.2124 -2.0912 0.3946 31 1 1.7531 -2.5511 -0.0013 32 1 5.1788 -1.9563 2.8987 33 1 5.2083 -0.8958 5.1182 34 1 3.2643 -1.0903 6.6074 35 1 1.2379 0.3725 7.7162 36 1 1.2375 -3.4193 3.6018 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589587162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:24 Heat of formation + Delta-G solvation = 2.719553 kcal Electronic energy + Delta-G solvation = -24854.281443 eV Core-core repulsion = 21202.225760 eV Total energy + Delta-G solvation = -3652.055682 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84728 -37.71932 -37.01182 -36.30878 -35.62874 -35.20043 -33.90818 -31.37279 -30.14230 -29.88516 -29.28890 -25.55816 -23.96511 -22.75356 -22.01808 -21.07626 -19.38628 -19.21372 -18.16581 -17.49371 -17.22939 -16.07488 -15.48504 -15.33997 -15.07327 -15.01790 -14.66791 -14.08817 -14.02849 -13.57225 -13.43369 -13.21393 -12.85050 -12.65599 -12.60143 -12.36989 -11.98461 -11.85295 -11.82628 -11.77973 -11.56210 -11.42961 -11.22333 -11.05473 -10.97398 -10.71111 -10.61111 -9.82199 -9.63775 -9.42480 -9.04914 -8.40095 -8.12044 -7.76549 -6.95421 -4.59154 0.53386 0.81081 1.27777 2.06492 2.57208 2.69452 2.97652 2.98438 3.01012 3.04673 3.19947 3.78656 3.80116 3.91494 3.94760 4.35603 4.63664 4.78259 4.85190 4.93103 5.23062 5.34970 5.41819 5.66559 5.93484 5.97503 6.05875 6.08655 6.21761 6.41456 6.57132 6.60133 6.70707 6.76383 6.92429 7.00218 7.13682 7.29103 7.52947 7.66146 7.75608 7.88940 8.35348 8.61941 8.65844 9.98717 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.004431 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.483567 B = 6317.447972 C = 6748.573621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.255 3.745 3 C -0.057 4.057 4 C -0.048 4.048 5 C -0.143 4.143 6 C -0.058 4.058 7 C -0.173 4.173 8 C 0.221 3.779 9 N -1.058 6.058 10 S 2.679 3.321 11 O -0.957 6.957 12 O -0.960 6.960 13 C -0.631 4.631 14 C -0.142 4.142 15 C -0.120 4.120 16 C -0.114 4.114 17 C 0.090 3.910 18 C -0.457 4.457 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.794 5.794 22 Si 0.913 3.087 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.123 4.123 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.176 0.824 31 H 0.424 0.576 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.283 0.717 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 3.932 -10.586 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.060 4.060 3 C -0.064 4.064 4 C -0.069 4.069 5 C -0.162 4.162 6 C -0.078 4.078 7 C -0.194 4.194 8 C 0.120 3.880 9 N -0.802 5.802 10 S 2.778 3.222 11 O -0.948 6.948 12 O -0.950 6.950 13 C -0.724 4.724 14 C -0.163 4.163 15 C -0.139 4.139 16 C -0.133 4.133 17 C 0.087 3.913 18 C -0.486 4.486 19 H 0.101 0.899 20 C -0.144 4.144 21 N -0.420 5.420 22 Si 0.737 3.263 23 H -0.182 1.182 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.145 4.145 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.193 0.807 31 H 0.260 0.740 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.147 0.853 35 H 0.094 0.906 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.897 3.214 -10.630 12.574 hybrid contribution -0.769 0.566 1.078 1.440 sum 5.128 3.780 -9.552 11.481 Atomic orbital electron populations 1.81254 1.11872 1.06743 1.09100 1.25540 0.92551 0.94234 0.93698 1.15943 0.84441 0.94080 1.11981 1.21021 0.94402 0.95760 0.95764 1.21061 0.93466 0.98833 1.02832 1.21244 1.00565 0.91484 0.94470 1.22119 0.91615 1.02440 1.03263 1.17331 0.91046 0.83993 0.95666 1.53620 1.36554 1.31428 1.58642 1.02163 0.73309 0.72616 0.74078 1.93571 1.62962 1.51178 1.87073 1.93427 1.34218 1.84080 1.83296 1.29435 1.03590 1.19495 1.19915 1.20099 0.96067 1.01856 0.98269 1.20819 0.98101 1.00231 0.94793 1.21766 0.91595 1.00307 0.99668 1.17685 0.92827 0.90406 0.90417 1.19678 1.08016 1.08899 1.12016 0.89869 1.25945 0.96394 0.93759 0.98345 1.69761 1.36550 1.04382 1.31275 0.86171 0.79984 0.80010 0.80145 1.18192 1.19519 1.19809 1.20772 0.95594 1.03517 0.94619 0.84787 0.84888 0.84617 0.80718 0.73991 0.87299 0.88175 0.85255 0.90576 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.07 18.54 41.84 0.78 -6.30 16 2 C 0.25 3.84 14.42 -22.47 -0.32 3.52 16 3 C -0.06 -0.74 5.76 -106.62 -0.61 -1.36 16 4 C -0.05 -0.49 9.75 -39.19 -0.38 -0.87 16 5 C -0.14 -1.24 10.02 -39.62 -0.40 -1.64 16 6 C -0.06 -0.56 10.03 -39.54 -0.40 -0.96 16 7 C -0.17 -2.17 8.94 -39.42 -0.35 -2.52 16 8 C 0.22 3.05 6.31 -83.56 -0.53 2.52 16 9 N -1.06 -15.65 5.46 32.57 0.18 -15.47 16 10 S 2.68 47.70 5.57 -107.50 -0.60 47.11 16 11 O -0.96 -19.39 17.27 -57.17 -0.99 -20.38 16 12 O -0.96 -17.02 13.99 -57.17 -0.80 -17.82 16 13 C -0.63 -13.27 5.88 -39.66 -0.23 -13.50 16 14 C -0.14 -2.88 9.53 -39.29 -0.37 -3.25 16 15 C -0.12 -2.57 10.02 -39.66 -0.40 -2.97 16 16 C -0.11 -2.76 8.70 -38.87 -0.34 -3.09 16 17 C 0.09 2.31 5.59 -106.82 -0.60 1.71 16 18 C -0.46 -11.70 9.07 -37.74 -0.34 -12.04 16 19 H 0.08 2.07 7.89 -52.49 -0.41 1.65 16 20 C 0.07 1.77 5.19 -17.34 -0.09 1.68 16 21 N -0.79 -19.48 10.79 55.55 0.60 -18.88 16 22 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 C -0.12 -2.93 9.26 -38.87 -0.36 -3.29 16 27 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 29 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 30 H 0.18 2.33 5.04 -52.49 -0.26 2.07 16 31 H 0.42 5.55 8.31 -34.47 -0.29 5.26 16 32 H 0.11 1.91 7.30 -52.48 -0.38 1.53 16 33 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 34 H 0.13 3.20 6.04 -52.49 -0.32 2.89 16 35 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 36 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -30.35 333.71 -9.45 -39.80 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -2.89 Total: 9.92 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: -5.73 Total: -36.06 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 1.55 Total: -40.65 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.79 Total: -38.20 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 47.70 SS G_CDS: -0.60 Total: 47.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.35 -9.45 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589587162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.515 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds