Wall clock time and date at job start Tue Mar 31 2020 15:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39728 * 120.20496 * 169.32666 * 3 2 1 5 5 C 1.37793 * 119.92005 * 180.27006 * 4 3 2 6 6 C 1.38567 * 120.34449 * 359.72697 * 5 4 3 7 7 C 1.38015 * 120.42473 * 359.97438 * 6 5 4 8 8 C 1.38882 * 120.06676 * 0.02562 * 7 6 5 9 9 N 1.39034 * 120.17101 * 179.97438 * 8 7 6 10 10 S 1.65602 * 119.99994 * 35.63732 * 9 8 7 11 11 O 1.42098 * 106.39957 * 177.55333 * 10 9 8 12 12 O 1.42106 * 106.39766 * 310.46763 * 10 9 8 13 13 C 1.76192 * 107.21872 * 64.00871 * 10 9 8 14 14 C 1.38657 * 119.87737 * 269.73059 * 13 10 9 15 15 C 1.38619 * 120.50115 * 179.72542 * 14 13 10 16 16 C 1.37639 * 120.24806 * 0.54774 * 15 14 13 17 17 C 1.40702 * 119.74344 * 359.72373 * 16 15 14 18 18 C 1.41395 * 120.24255 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99779 * 204.04834 * 18 17 16 20 20 C 1.39942 * 119.99815 * 24.04375 * 18 17 16 21 21 N 1.30824 * 120.00132 * 15.58122 * 20 18 17 22 22 Si 1.86803 * 120.00084 * 195.57377 * 20 18 17 23 23 H 1.48509 * 109.46719 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47204 * 119.99978 * 22 20 18 25 25 H 1.48500 * 109.47249 * 240.00701 * 22 20 18 26 26 C 1.37603 * 119.87606 * 90.00195 * 13 10 9 27 27 H 1.08002 * 120.04275 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.82871 * 179.74435 * 5 4 3 29 29 H 1.08004 * 119.78951 * 180.02562 * 6 5 4 30 30 H 1.07991 * 119.96719 * 179.97438 * 7 6 5 31 31 H 0.97001 * 119.99968 * 215.63326 * 9 8 7 32 32 H 1.08006 * 119.74776 * 359.97438 * 14 13 10 33 33 H 1.08005 * 119.87201 * 180.25184 * 15 14 13 34 34 H 1.07997 * 120.12701 * 179.75241 * 16 15 14 35 35 H 0.96999 * 119.99588 * 179.97438 * 21 20 18 36 36 H 1.08000 * 120.12623 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 1.1876 -0.2237 5 6 4.6484 1.1805 -0.2279 6 6 5.3430 0.0022 -0.0058 7 6 4.6636 -1.1772 0.2228 8 6 3.2748 -1.1899 0.2309 9 7 2.5882 -2.3768 0.4603 10 16 3.1962 -3.4932 1.5217 11 8 2.2489 -4.5509 1.5779 12 8 4.5576 -3.6874 1.1636 13 6 3.2031 -2.7460 3.1174 14 6 4.3185 -2.0426 3.5458 15 6 4.3357 -1.4448 4.7964 16 6 3.2473 -1.5534 5.6319 17 6 2.1121 -2.2697 5.2098 18 6 0.9879 -2.3875 6.0593 19 1 0.3028 -3.2133 5.9369 20 6 0.7632 -1.4340 7.0587 21 7 1.3941 -0.2885 7.0237 22 14 -0.4378 -1.7969 8.4427 23 1 -1.0157 -3.1519 8.2540 24 1 0.2749 -1.7400 9.7442 25 1 -1.5271 -0.7876 8.4302 26 6 2.1037 -2.8676 3.9359 27 1 2.7341 2.1087 -0.3977 28 1 5.1898 2.0980 -0.4051 29 1 6.4230 0.0070 -0.0107 30 1 5.2124 -2.0912 0.3946 31 1 1.7531 -2.5511 -0.0013 32 1 5.1788 -1.9563 2.8987 33 1 5.2083 -0.8958 5.1182 34 1 3.2643 -1.0903 6.6074 35 1 1.2379 0.3725 7.7162 36 1 1.2375 -3.4193 3.6018 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589587162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:23 Heat of formation + Delta-G solvation = -15.827855 kcal Electronic energy + Delta-G solvation = -24855.085719 eV Core-core repulsion = 21202.225760 eV Total energy + Delta-G solvation = -3652.859958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79429 -39.47568 -38.49465 -37.50712 -37.12680 -36.25641 -35.70068 -32.28340 -31.92787 -31.62482 -30.24069 -27.38443 -24.88705 -23.76557 -23.66890 -22.83603 -20.78962 -20.26607 -19.76626 -18.63008 -18.48623 -17.80160 -16.96509 -16.71779 -16.43166 -16.30574 -15.90621 -15.33302 -15.18942 -15.10758 -14.95470 -14.34738 -14.28131 -13.98204 -13.84287 -13.76689 -13.47494 -13.41289 -13.27429 -13.17608 -13.07771 -12.83492 -12.66477 -12.63808 -12.28535 -12.18456 -11.71399 -11.56415 -11.32198 -11.19640 -9.93818 -9.89630 -9.57322 -9.34942 -8.74306 -6.48933 -0.84317 -0.15467 0.34229 0.40513 0.82503 1.34186 1.41444 1.48603 1.52742 1.82562 1.94360 2.14997 2.43614 2.61339 2.81924 2.91653 3.25917 3.49380 3.80742 3.92336 4.19634 4.28430 4.43148 4.46868 4.57309 4.82913 4.83069 4.89541 5.00889 5.08220 5.17125 5.22779 5.37789 5.40054 5.52359 5.59143 5.67658 5.87571 5.92268 5.99457 6.09599 6.38566 6.50590 6.77219 6.81976 8.22410 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.004431 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.483567 B = 6317.447972 C = 6748.573621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.272 3.728 3 C -0.077 4.077 4 C -0.044 4.044 5 C -0.127 4.127 6 C -0.046 4.046 7 C -0.189 4.189 8 C 0.194 3.806 9 N -1.052 6.052 10 S 2.713 3.287 11 O -0.986 6.986 12 O -0.953 6.953 13 C -0.641 4.641 14 C -0.129 4.129 15 C -0.121 4.121 16 C -0.134 4.134 17 C 0.060 3.940 18 C -0.500 4.500 19 H 0.073 0.927 20 C 0.038 3.962 21 N -0.822 5.822 22 Si 0.981 3.019 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.266 1.266 26 C -0.151 4.151 27 H 0.157 0.843 28 H 0.175 0.825 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.430 0.570 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.292 0.708 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.848 5.736 -11.601 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.042 4.042 3 C -0.084 4.084 4 C -0.065 4.065 5 C -0.145 4.145 6 C -0.065 4.065 7 C -0.210 4.210 8 C 0.094 3.906 9 N -0.800 5.800 10 S 2.808 3.192 11 O -0.976 6.976 12 O -0.943 6.943 13 C -0.731 4.731 14 C -0.150 4.150 15 C -0.140 4.140 16 C -0.154 4.154 17 C 0.056 3.944 18 C -0.529 4.529 19 H 0.091 0.909 20 C -0.178 4.178 21 N -0.448 5.448 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.182 1.182 25 H -0.191 1.191 26 C -0.172 4.172 27 H 0.174 0.826 28 H 0.192 0.808 29 H 0.189 0.811 30 H 0.185 0.815 31 H 0.267 0.733 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.480 5.034 -11.622 15.242 hybrid contribution -1.352 0.096 1.175 1.793 sum 7.128 5.129 -10.447 13.648 Atomic orbital electron populations 1.81258 1.13303 1.08268 1.11140 1.25986 0.93041 0.92895 0.92327 1.16155 0.83245 0.95168 1.13872 1.21421 0.95414 0.95347 0.94329 1.21553 0.92724 1.00094 1.00162 1.21712 1.02363 0.90449 0.92004 1.22195 0.90852 1.03529 1.04414 1.17579 0.91796 0.83485 0.97711 1.53238 1.37137 1.31935 1.57685 1.01250 0.72997 0.71988 0.72945 1.93531 1.63936 1.52858 1.87282 1.93438 1.34010 1.84151 1.82743 1.29989 1.02773 1.18629 1.21719 1.20582 0.96554 0.99766 0.98067 1.21207 0.98204 0.99901 0.94676 1.21787 0.92482 1.01074 1.00055 1.18029 0.93560 0.91466 0.91311 1.19867 1.08916 1.09871 1.14270 0.90912 1.26691 0.97989 0.93145 0.99943 1.69785 1.37753 1.04976 1.32237 0.85164 0.77849 0.79487 0.77309 1.18633 1.18182 1.19077 1.20793 0.96727 1.04723 0.94948 0.82558 0.80803 0.81098 0.81511 0.73308 0.83723 0.84767 0.86393 0.89724 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.24 18.54 19.00 0.35 -15.89 16 2 C 0.27 8.18 14.42 88.33 1.27 9.46 16 3 C -0.08 -1.88 5.76 -21.16 -0.12 -2.00 16 4 C -0.04 -0.74 9.75 22.52 0.22 -0.52 16 5 C -0.13 -1.52 10.02 22.24 0.22 -1.30 16 6 C -0.05 -0.66 10.03 22.30 0.22 -0.43 16 7 C -0.19 -4.13 8.94 22.37 0.20 -3.93 16 8 C 0.19 5.06 6.31 38.67 0.24 5.30 16 9 N -1.05 -30.78 5.46 -50.88 -0.28 -31.06 16 10 S 2.71 95.65 5.57 -56.49 -0.31 95.34 16 11 O -0.99 -40.72 17.27 -128.00 -2.21 -42.93 16 12 O -0.95 -32.12 13.99 -128.00 -1.79 -33.91 16 13 C -0.64 -27.00 5.88 22.22 0.13 -26.87 16 14 C -0.13 -5.02 9.53 22.46 0.21 -4.81 16 15 C -0.12 -5.02 10.02 22.22 0.22 -4.80 16 16 C -0.13 -6.66 8.70 22.73 0.20 -6.46 16 17 C 0.06 3.18 5.59 -21.29 -0.12 3.07 16 18 C -0.50 -27.07 9.07 23.46 0.21 -26.85 16 19 H 0.07 3.90 7.89 -2.91 -0.02 3.87 16 20 C 0.04 1.86 5.19 85.26 0.44 2.30 16 21 N -0.82 -41.32 10.79 21.83 0.24 -41.08 16 22 Si 0.98 38.00 29.59 68.60 2.03 40.03 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 24 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 25 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 26 C -0.15 -7.48 9.26 22.73 0.21 -7.27 16 27 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 28 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 29 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.17 3.94 5.04 -2.92 -0.01 3.92 16 31 H 0.43 11.46 8.31 -96.74 -0.80 10.66 16 32 H 0.15 4.54 7.30 -2.91 -0.02 4.52 16 33 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 34 H 0.12 6.03 6.04 -2.91 -0.02 6.01 16 35 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 36 H 0.10 5.01 7.60 -2.91 -0.02 4.99 16 Total: -1.00 -69.43 333.71 2.15 -67.28 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.36 Total: 27.35 kcal Atomic # 6 Polarization: -68.89 SS G_CDS: 3.77 Total: -65.12 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: 0.31 Total: -88.03 kcal Atomic # 8 Polarization: -72.84 SS G_CDS: -4.00 Total: -76.84 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 95.65 SS G_CDS: -0.31 Total: 95.34 kcal Total: -69.43 2.15 -67.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589587162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.451 kcal (2) G-P(sol) polarization free energy of solvation -69.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds