Wall clock time and date at job start Tue Mar 31 2020 14:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99778 * 2 1 4 4 H 1.48500 * 109.47195 * 264.77675 * 3 2 1 5 5 H 1.48507 * 109.47071 * 24.77261 * 3 2 1 6 6 H 1.48494 * 109.47383 * 144.77593 * 3 2 1 7 7 C 1.40050 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99600 * 350.58865 * 7 2 1 9 9 C 1.46368 * 120.00217 * 170.58373 * 7 2 1 10 10 O 1.21694 * 119.99862 * 342.96747 * 9 7 2 11 11 N 1.34780 * 120.00232 * 162.96826 * 9 7 2 12 12 C 1.47074 * 120.87516 * 354.74097 * 11 9 7 13 13 C 1.53247 * 108.51992 * 231.20270 * 12 11 9 14 14 N 1.46897 * 109.34110 * 306.17327 * 13 12 11 15 15 C 1.39748 * 111.00096 * 187.24514 * 14 13 12 16 16 C 1.38861 * 120.07402 * 300.00657 * 15 14 13 17 17 C 1.38228 * 119.92056 * 179.97438 * 16 15 14 18 18 Cl 1.73600 * 119.96269 * 180.02562 * 17 16 15 19 19 C 1.38403 * 120.07148 * 359.97438 * 17 16 15 20 20 C 1.38252 * 120.14434 * 0.02562 * 19 17 16 21 21 C 1.38214 * 120.07269 * 359.97438 * 20 19 17 22 22 Cl 1.73605 * 120.03214 * 180.02562 * 21 20 19 23 23 C 1.46904 * 111.26528 * 63.10305 * 14 13 12 24 24 C 1.47075 * 120.88082 * 174.76153 * 11 9 7 25 25 H 0.96999 * 120.00114 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.63132 * 111.50115 * 12 11 9 27 27 H 1.08995 * 109.63748 * 350.91507 * 12 11 9 28 28 H 1.08993 * 109.49200 * 186.21495 * 13 12 11 29 29 H 1.09001 * 109.48691 * 66.13211 * 13 12 11 30 30 H 1.07995 * 120.03719 * 0.24993 * 16 15 14 31 31 H 1.08006 * 119.92757 * 180.02562 * 19 17 16 32 32 H 1.07996 * 119.96669 * 180.02562 * 20 19 17 33 33 H 1.08999 * 109.49541 * 56.85636 * 23 14 13 34 34 H 1.09005 * 109.48951 * 176.93372 * 23 14 13 35 35 H 1.08998 * 109.62781 * 248.50115 * 24 11 9 36 36 H 1.08999 * 109.62942 * 9.08633 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5985 1.9828 -1.3942 5 1 1.3872 2.6821 0.5867 6 1 3.4786 1.4747 0.8075 7 6 2.0071 -1.2128 0.0005 8 1 1.4780 -2.1418 0.1539 9 6 3.4560 -1.2214 -0.2068 10 8 4.0086 -0.2461 -0.6805 11 7 4.1781 -2.3094 0.1267 12 6 3.5500 -3.4532 0.8051 13 6 4.3803 -3.7992 2.0458 14 7 5.7809 -4.0028 1.6526 15 6 6.5384 -4.4789 2.7262 16 6 6.6472 -3.7270 3.8886 17 6 7.3968 -4.2012 4.9488 18 17 7.5330 -3.2625 6.4027 19 6 8.0381 -5.4239 4.8527 20 6 7.9317 -6.1748 3.6967 21 6 7.1837 -5.7064 2.6331 22 17 7.0502 -6.6504 1.1822 23 6 6.3640 -2.7721 1.1018 24 6 5.6151 -2.3841 -0.1776 25 1 -0.4850 0.8400 -0.0004 26 1 3.5244 -4.3097 0.1314 27 1 2.5359 -3.1894 1.1052 28 1 3.9936 -4.7117 2.4994 29 1 4.3193 -2.9814 2.7639 30 1 6.1431 -2.7751 3.9659 31 1 8.6228 -5.7924 5.6827 32 1 8.4329 -7.1287 3.6251 33 1 6.2754 -1.9686 1.8330 34 1 7.4160 -2.9398 0.8707 35 1 5.7879 -3.1377 -0.9459 36 1 5.9662 -1.4133 -0.5274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593789418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:46 Heat of formation + Delta-G solvation = -33.147997 kcal Electronic energy + Delta-G solvation = -23259.097024 eV Core-core repulsion = 19601.009452 eV Total energy + Delta-G solvation = -3658.087572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47932 -40.14779 -38.47272 -37.67254 -37.07777 -35.36244 -35.01035 -32.32271 -31.69149 -31.07454 -28.94768 -27.24265 -24.66271 -24.22058 -23.24352 -22.30977 -20.60832 -18.97005 -18.57536 -17.91004 -17.16452 -17.05835 -16.70160 -16.24662 -16.01699 -15.91077 -15.63439 -15.17824 -14.84865 -14.71475 -14.49276 -13.97217 -13.82758 -13.48681 -13.39512 -13.32806 -13.09054 -12.98195 -12.61687 -12.45540 -12.30293 -12.25762 -11.98436 -11.86359 -11.69822 -11.52408 -11.22054 -10.11681 -10.03211 -9.83140 -9.57102 -9.27695 -8.80594 -7.01229 -0.15186 -0.00768 0.96267 1.26302 1.30213 1.34387 1.55768 2.06274 2.27234 2.31293 2.45996 2.74758 3.28353 3.63110 3.79275 3.93930 3.98284 4.05832 4.19149 4.20488 4.30302 4.34829 4.51321 4.60544 4.69341 4.75440 4.82212 4.90697 5.01372 5.02935 5.09823 5.13867 5.42093 5.66020 5.70638 5.94186 6.09566 6.23705 6.61207 7.11128 7.95491 8.25224 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.003721 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.718149 B = 7523.718431 C = 8656.940744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.074 3.926 3 Si 1.006 2.994 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.289 1.289 7 C -0.550 4.550 8 H 0.086 0.914 9 C 0.552 3.448 10 O -0.647 6.647 11 N -0.633 5.633 12 C 0.127 3.873 13 C 0.057 3.943 14 N -0.492 5.492 15 C 0.100 3.900 16 C -0.136 4.136 17 C -0.029 4.029 18 Cl -0.065 7.065 19 C -0.093 4.093 20 C -0.086 4.086 21 C -0.017 4.017 22 Cl -0.048 7.048 23 C 0.062 3.938 24 C 0.123 3.877 25 H 0.292 0.708 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.034 0.966 30 H 0.127 0.873 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.030 0.970 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.909 -15.264 11.988 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.142 4.142 3 Si 0.838 3.162 4 H -0.219 1.219 5 H -0.225 1.225 6 H -0.216 1.216 7 C -0.586 4.586 8 H 0.104 0.896 9 C 0.360 3.640 10 O -0.541 6.541 11 N -0.366 5.366 12 C 0.004 3.996 13 C -0.070 4.070 14 N -0.214 5.214 15 C 0.005 3.995 16 C -0.157 4.157 17 C -0.057 4.057 18 Cl -0.036 7.036 19 C -0.111 4.111 20 C -0.105 4.105 21 C -0.045 4.045 22 Cl -0.019 7.019 23 C -0.065 4.065 24 C 0.000 4.000 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.052 0.948 30 H 0.145 0.855 31 H 0.188 0.812 32 H 0.191 0.809 33 H 0.048 0.952 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.957 -15.102 11.358 25.389 hybrid contribution -0.199 1.583 0.370 1.638 sum 16.759 -13.519 11.728 24.518 Atomic orbital electron populations 1.69556 1.08225 1.31042 1.39059 1.26172 0.95209 1.03514 0.89343 0.84705 0.76389 0.76741 0.78344 1.21923 1.22523 1.21565 1.20949 0.90107 0.95779 1.51792 0.89649 1.18279 0.88036 0.80790 0.76903 1.90191 1.73727 1.36029 1.54151 1.47736 1.08740 1.18071 1.62041 1.21669 0.96965 0.87934 0.93034 1.22526 0.86738 1.01280 0.96475 1.59644 1.01902 1.30961 1.28844 1.18521 0.97087 0.93674 0.90221 1.21565 1.00228 1.00981 0.92957 1.20990 1.01154 0.94772 0.88753 1.98394 1.96956 1.72656 1.35635 1.21336 0.98909 0.91700 0.99188 1.21295 0.97458 1.01450 0.90300 1.21130 1.00411 0.92430 0.90511 1.98389 1.96887 1.70543 1.36057 1.22441 0.99268 0.89008 0.95811 1.21454 0.80660 1.01398 0.96481 0.89789 0.91060 0.89459 0.87845 0.94807 0.85542 0.81218 0.80881 0.95153 0.88027 0.90949 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.72 13.92 21.84 0.30 -47.42 16 2 C 0.07 4.17 5.52 85.30 0.47 4.64 16 3 Si 1.01 52.45 25.84 68.60 1.77 54.22 16 4 H -0.29 -15.86 7.11 99.48 0.71 -15.15 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.29 -15.91 6.78 99.48 0.67 -15.23 16 7 C -0.55 -30.86 9.08 24.83 0.23 -30.63 16 8 H 0.09 4.77 6.47 -2.91 -0.02 4.75 16 9 C 0.55 29.33 7.24 86.36 0.63 29.96 16 10 O -0.65 -37.68 12.09 -4.33 -0.05 -37.73 16 11 N -0.63 -26.69 3.01 -823.03 -2.48 -29.16 16 12 C 0.13 4.42 6.42 86.35 0.55 4.97 16 13 C 0.06 1.60 5.25 86.39 0.45 2.06 16 14 N -0.49 -12.81 3.99 -694.21 -2.77 -15.59 16 15 C 0.10 2.24 4.66 38.21 0.18 2.41 16 16 C -0.14 -2.95 8.51 22.42 0.19 -2.76 16 17 C -0.03 -0.52 6.32 22.31 0.14 -0.38 16 18 Cl -0.07 -1.18 28.95 -2.72 -0.08 -1.26 16 19 C -0.09 -1.21 9.82 22.31 0.22 -0.99 16 20 C -0.09 -1.14 9.82 22.27 0.22 -0.92 16 21 C -0.02 -0.32 6.34 22.45 0.14 -0.18 16 22 Cl -0.05 -0.95 28.44 -2.72 -0.08 -1.03 16 23 C 0.06 1.76 5.30 86.38 0.46 2.21 16 24 C 0.12 4.35 6.61 86.35 0.57 4.92 16 25 H 0.29 15.01 8.29 -92.71 -0.77 14.24 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.09 3.34 5.71 -2.39 -0.01 3.33 16 28 H 0.10 2.48 8.09 -2.39 -0.02 2.46 16 29 H 0.03 1.03 7.39 -2.39 -0.02 1.01 16 30 H 0.13 3.05 7.18 -2.91 -0.02 3.03 16 31 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.03 0.94 7.62 -2.39 -0.02 0.92 16 34 H 0.10 2.45 8.09 -2.38 -0.02 2.43 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.84 7.04 -2.39 -0.02 2.82 16 Total: -1.00 -66.41 326.41 2.16 -64.25 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: 1.09 Total: -1.60 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 4.45 Total: 15.32 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -4.94 Total: -92.17 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.05 Total: -37.73 kcal Atomic # 14 Polarization: 52.45 SS G_CDS: 1.77 Total: 54.22 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.16 Total: -2.29 kcal Total: -66.41 2.16 -64.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593789418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.103 kcal (2) G-P(sol) polarization free energy of solvation -66.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds