Wall clock time and date at job start Tue Mar 31 2020 14:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48505 * 109.47076 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46978 * 299.99950 * 3 2 1 6 6 H 1.48496 * 109.47158 * 59.99903 * 3 2 1 7 7 C 1.37879 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 196.77524 * 7 2 1 9 9 C 1.50699 * 120.00075 * 16.77494 * 7 2 1 10 10 C 1.53006 * 115.54755 * 39.77125 * 9 7 2 11 11 N 1.46492 * 109.47228 * 81.00460 * 10 9 7 12 12 C 1.39855 * 120.00265 * 184.84643 * 11 10 9 13 13 C 1.38533 * 119.98573 * 354.63663 * 12 11 10 14 14 C 1.39567 * 119.79699 * 179.76801 * 13 12 11 15 15 C 1.47723 * 120.10856 * 180.22985 * 14 13 12 16 16 N 1.34780 * 120.00007 * 0.29708 * 15 14 13 17 17 O 1.21575 * 120.00198 * 180.29586 * 15 14 13 18 18 C 1.39753 * 119.78148 * 0.52398 * 14 13 12 19 19 Cl 1.73599 * 120.01081 * 179.70400 * 18 14 13 20 20 C 1.38096 * 119.97282 * 359.72853 * 18 14 13 21 21 C 1.38316 * 120.20320 * 359.97438 * 20 18 14 22 22 Cl 1.73605 * 119.88819 * 180.02562 * 21 20 18 23 23 C 1.52996 * 117.49968 * 185.43488 * 9 7 2 24 24 C 1.52996 * 60.03251 * 107.50540 * 23 9 7 25 25 H 0.96998 * 119.99655 * 4.98237 * 1 2 3 26 26 H 1.09004 * 109.46822 * 201.00367 * 10 9 7 27 27 H 1.08993 * 109.46935 * 321.00020 * 10 9 7 28 28 H 0.97004 * 120.00219 * 4.85266 * 11 10 9 29 29 H 1.07998 * 120.09816 * 359.97438 * 13 12 11 30 30 H 0.97003 * 119.99873 * 359.97438 * 16 15 14 31 31 H 0.96999 * 120.00172 * 179.97438 * 16 15 14 32 32 H 1.08005 * 119.89836 * 180.02562 * 20 18 14 33 33 H 1.09003 * 117.50421 * 215.00571 * 23 9 7 34 34 H 1.09000 * 117.50007 * 0.02562 * 23 9 7 35 35 H 1.09001 * 117.49972 * 107.50296 * 24 23 9 36 36 H 1.08997 * 117.50081 * 252.52598 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0501 -1.2139 0.2705 9 6 1.2991 -2.4716 -0.3756 10 6 0.3117 -2.3621 -1.5392 11 7 1.0437 -2.4116 -2.8071 12 6 0.3633 -2.2274 -4.0151 13 6 -1.0169 -2.1092 -4.0213 14 6 -1.6915 -1.9206 -5.2284 15 6 -3.1627 -1.7886 -5.2425 16 7 -3.8554 -1.8442 -4.0876 17 8 -3.7488 -1.6298 -6.2957 18 6 -0.9710 -1.8633 -6.4246 19 17 -1.8047 -1.6366 -7.9303 20 6 0.4043 -1.9875 -6.4082 21 6 1.0724 -2.1682 -5.2107 22 17 2.8015 -2.3227 -5.1996 23 6 2.0814 -3.7787 -0.2335 24 6 0.9582 -3.4494 0.7517 25 1 -0.4849 0.8369 -0.0730 26 1 -0.3951 -3.1908 -1.4951 27 1 -0.2297 -1.4188 -1.4687 28 1 2.0003 -2.5723 -2.8090 29 1 -1.5690 -2.1594 -3.0944 30 1 -3.3878 -1.9713 -3.2473 31 1 -4.8214 -1.7571 -4.0967 32 1 0.9599 -1.9426 -7.3333 33 1 1.8927 -4.5608 -0.9690 34 1 3.1062 -3.7148 0.1324 35 1 0.0303 -4.0148 0.6644 36 1 1.2440 -3.1683 1.7652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594708484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:09 Heat of formation + Delta-G solvation = 4.921919 kcal Electronic energy + Delta-G solvation = -23179.044562 eV Core-core repulsion = 19522.607826 eV Total energy + Delta-G solvation = -3656.436737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12221 -38.59677 -37.21214 -36.42202 -36.02612 -34.16115 -33.71121 -32.39269 -30.78622 -29.05415 -26.04592 -25.33016 -24.01761 -21.94177 -21.37683 -20.47014 -19.35875 -18.28173 -17.23155 -16.58781 -16.41994 -15.68054 -15.39709 -14.92687 -14.78902 -14.39762 -14.19735 -13.81320 -13.66672 -13.50290 -13.01825 -12.61999 -12.35052 -11.97195 -11.84089 -11.78209 -11.19254 -11.05783 -11.04468 -10.83409 -10.80077 -10.63715 -10.44163 -9.69651 -9.63320 -9.60034 -9.50207 -9.23335 -8.96163 -8.88436 -8.28858 -7.06417 -6.32250 -4.31427 0.72195 1.40952 2.09082 2.56729 2.90021 3.15211 3.26493 3.29480 3.50475 3.77474 3.83817 4.22925 4.68744 4.76160 4.84629 5.24673 5.29091 5.34005 5.68799 5.75549 5.77942 5.96954 6.08014 6.08483 6.24044 6.39221 6.43025 6.47608 6.67756 6.80420 6.82534 7.13021 7.29724 7.34360 7.66987 7.69025 8.10187 8.16444 8.29115 8.65209 9.29564 10.71934 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.004381 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.702744 B = 6390.205903 C = 6957.901172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.075 3.925 3 Si 0.885 3.115 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.488 4.488 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.139 3.861 11 N -0.705 5.705 12 C 0.244 3.756 13 C -0.150 4.150 14 C -0.077 4.077 15 C 0.561 3.439 16 N -0.849 5.849 17 O -0.522 6.522 18 C -0.054 4.054 19 Cl -0.045 7.045 20 C -0.059 4.059 21 C -0.096 4.096 22 Cl -0.061 7.061 23 C -0.209 4.209 24 C -0.188 4.188 25 H 0.263 0.737 26 H 0.031 0.969 27 H 0.117 0.883 28 H 0.404 0.596 29 H 0.144 0.856 30 H 0.404 0.596 31 H 0.404 0.596 32 H 0.143 0.857 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 -4.871 -8.394 10.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.128 4.128 3 Si 0.712 3.288 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.525 4.525 8 H 0.081 0.919 9 C 0.038 3.962 10 C 0.017 3.983 11 N -0.328 5.328 12 C 0.131 3.869 13 C -0.174 4.174 14 C -0.082 4.082 15 C 0.347 3.653 16 N -0.414 5.414 17 O -0.398 6.398 18 C -0.084 4.084 19 Cl -0.016 7.016 20 C -0.079 4.079 21 C -0.129 4.129 22 Cl -0.032 7.032 23 C -0.246 4.246 24 C -0.227 4.227 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.135 0.865 28 H 0.241 0.759 29 H 0.161 0.839 30 H 0.234 0.766 31 H 0.235 0.765 32 H 0.160 0.840 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.878 -4.630 -8.957 10.485 hybrid contribution 0.833 0.756 0.506 1.233 sum -2.045 -3.874 -8.451 9.519 Atomic orbital electron populations 1.69903 1.06012 1.27274 1.47726 1.24876 0.94724 0.99147 0.94089 0.86648 0.80615 0.83675 0.77884 1.19555 1.20577 1.20944 1.20540 0.95992 0.89949 1.46020 0.91904 1.19080 0.95478 0.88999 0.92685 1.21453 0.93955 1.02767 0.80116 1.45337 1.11178 1.73572 1.02681 1.17543 0.91093 0.92150 0.86065 1.20671 0.92034 1.07400 0.97322 1.19448 0.93214 1.03151 0.92402 1.18093 0.86982 0.76287 0.83971 1.43784 1.11454 1.76720 1.09420 1.90891 1.70746 1.48030 1.30152 1.20254 0.91416 1.09410 0.87353 1.98368 1.78072 1.95350 1.29826 1.20509 0.91853 0.98441 0.97109 1.20312 0.84879 1.14282 0.93402 1.98351 1.09792 1.96505 1.98557 1.22885 0.96482 1.01493 1.03768 1.22953 0.97190 1.06153 0.96391 0.92651 0.95107 0.86522 0.75881 0.83878 0.76609 0.76520 0.83960 0.91221 0.90388 0.91505 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.51 11.10 55.43 0.62 -20.90 16 2 C 0.07 1.83 5.12 -17.82 -0.09 1.74 16 3 Si 0.88 19.57 29.57 -169.99 -5.03 14.54 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.49 -11.83 8.98 -34.44 -0.31 -12.14 16 8 H 0.06 1.56 7.87 -52.49 -0.41 1.15 16 9 C 0.04 0.82 1.71 -155.62 -0.27 0.55 16 10 C 0.14 2.70 4.61 -4.04 -0.02 2.68 16 11 N -0.71 -12.36 5.64 -58.63 -0.33 -12.69 16 12 C 0.24 3.93 6.64 -83.75 -0.56 3.37 16 13 C -0.15 -2.23 8.79 -38.98 -0.34 -2.57 16 14 C -0.08 -1.15 5.87 -104.96 -0.62 -1.77 16 15 C 0.56 8.18 8.04 -12.38 -0.10 8.08 16 16 N -0.85 -9.17 8.82 30.50 0.27 -8.90 16 17 O -0.52 -8.92 14.79 5.30 0.08 -8.85 16 18 C -0.05 -0.80 6.35 -39.07 -0.25 -1.05 16 19 Cl -0.05 -0.67 26.00 -51.86 -1.35 -2.02 16 20 C -0.06 -0.82 9.58 -39.60 -0.38 -1.20 16 21 C -0.10 -1.44 6.34 -39.22 -0.25 -1.69 16 22 Cl -0.06 -0.86 27.58 -51.86 -1.43 -2.29 16 23 C -0.21 -3.94 9.80 -26.74 -0.26 -4.20 16 24 C -0.19 -3.76 9.89 -26.70 -0.26 -4.02 16 25 H 0.26 6.27 8.32 -40.82 -0.34 5.93 16 26 H 0.03 0.55 7.78 -51.93 -0.40 0.15 16 27 H 0.12 2.52 5.25 -51.93 -0.27 2.25 16 28 H 0.40 7.15 7.06 -40.82 -0.29 6.86 16 29 H 0.14 1.96 5.09 -52.49 -0.27 1.69 16 30 H 0.40 3.83 6.86 -40.82 -0.28 3.55 16 31 H 0.40 3.58 8.93 -40.82 -0.36 3.22 16 32 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -26.34 334.27 -9.37 -35.71 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -3.54 Total: 12.59 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.70 Total: -12.23 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.55 Total: -42.49 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -2.78 Total: -4.31 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.34 -9.37 -35.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.631 kcal (2) G-P(sol) polarization free energy of solvation -26.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds