Wall clock time and date at job start Tue Mar 31 2020 14:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48505 * 109.47076 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46978 * 299.99950 * 3 2 1 6 6 H 1.48496 * 109.47158 * 59.99903 * 3 2 1 7 7 C 1.37879 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 196.77524 * 7 2 1 9 9 C 1.50699 * 120.00075 * 16.77494 * 7 2 1 10 10 C 1.53006 * 115.54755 * 39.77125 * 9 7 2 11 11 N 1.46492 * 109.47228 * 81.00460 * 10 9 7 12 12 C 1.39855 * 120.00265 * 184.84643 * 11 10 9 13 13 C 1.38533 * 119.98573 * 354.63663 * 12 11 10 14 14 C 1.39567 * 119.79699 * 179.76801 * 13 12 11 15 15 C 1.47723 * 120.10856 * 180.22985 * 14 13 12 16 16 N 1.34780 * 120.00007 * 0.29708 * 15 14 13 17 17 O 1.21575 * 120.00198 * 180.29586 * 15 14 13 18 18 C 1.39753 * 119.78148 * 0.52398 * 14 13 12 19 19 Cl 1.73599 * 120.01081 * 179.70400 * 18 14 13 20 20 C 1.38096 * 119.97282 * 359.72853 * 18 14 13 21 21 C 1.38316 * 120.20320 * 359.97438 * 20 18 14 22 22 Cl 1.73605 * 119.88819 * 180.02562 * 21 20 18 23 23 C 1.52996 * 117.49968 * 185.43488 * 9 7 2 24 24 C 1.52996 * 60.03251 * 107.50540 * 23 9 7 25 25 H 0.96998 * 119.99655 * 4.98237 * 1 2 3 26 26 H 1.09004 * 109.46822 * 201.00367 * 10 9 7 27 27 H 1.08993 * 109.46935 * 321.00020 * 10 9 7 28 28 H 0.97004 * 120.00219 * 4.85266 * 11 10 9 29 29 H 1.07998 * 120.09816 * 359.97438 * 13 12 11 30 30 H 0.97003 * 119.99873 * 359.97438 * 16 15 14 31 31 H 0.96999 * 120.00172 * 179.97438 * 16 15 14 32 32 H 1.08005 * 119.89836 * 180.02562 * 20 18 14 33 33 H 1.09003 * 117.50421 * 215.00571 * 23 9 7 34 34 H 1.09000 * 117.50007 * 0.02562 * 23 9 7 35 35 H 1.09001 * 117.49972 * 107.50296 * 24 23 9 36 36 H 1.08997 * 117.50081 * 252.52598 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0501 -1.2139 0.2705 9 6 1.2991 -2.4716 -0.3756 10 6 0.3117 -2.3621 -1.5392 11 7 1.0437 -2.4116 -2.8071 12 6 0.3633 -2.2274 -4.0151 13 6 -1.0169 -2.1092 -4.0213 14 6 -1.6915 -1.9206 -5.2284 15 6 -3.1627 -1.7886 -5.2425 16 7 -3.8554 -1.8442 -4.0876 17 8 -3.7488 -1.6298 -6.2957 18 6 -0.9710 -1.8633 -6.4246 19 17 -1.8047 -1.6366 -7.9303 20 6 0.4043 -1.9875 -6.4082 21 6 1.0724 -2.1682 -5.2107 22 17 2.8015 -2.3227 -5.1996 23 6 2.0814 -3.7787 -0.2335 24 6 0.9582 -3.4494 0.7517 25 1 -0.4849 0.8369 -0.0730 26 1 -0.3951 -3.1908 -1.4951 27 1 -0.2297 -1.4188 -1.4687 28 1 2.0003 -2.5723 -2.8090 29 1 -1.5690 -2.1594 -3.0944 30 1 -3.3878 -1.9713 -3.2473 31 1 -4.8214 -1.7571 -4.0967 32 1 0.9599 -1.9426 -7.3333 33 1 1.8927 -4.5608 -0.9690 34 1 3.1062 -3.7148 0.1324 35 1 0.0303 -4.0148 0.6644 36 1 1.2440 -3.1683 1.7652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594708484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:09 Heat of formation + Delta-G solvation = -10.007237 kcal Electronic energy + Delta-G solvation = -23179.691939 eV Core-core repulsion = 19522.607826 eV Total energy + Delta-G solvation = -3657.084113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28491 -39.80812 -38.68032 -37.57671 -37.21702 -35.47253 -34.77457 -34.20710 -31.91537 -30.32888 -27.73804 -26.80739 -25.19695 -23.20865 -22.84490 -21.63986 -20.97213 -19.43914 -18.54176 -17.84262 -17.70827 -16.95542 -16.72208 -16.57375 -16.01560 -15.71999 -15.53877 -15.18042 -14.93675 -14.75898 -14.37823 -13.85709 -13.79999 -13.47198 -13.17224 -13.02877 -12.87332 -12.75225 -12.35635 -12.22113 -12.11314 -12.04702 -11.96402 -11.27384 -11.19931 -10.74357 -10.67436 -10.61817 -10.57568 -10.02122 -10.01126 -8.38707 -8.11120 -6.17259 -0.44069 0.23427 0.93259 1.37596 1.40341 1.46139 1.51956 1.74853 2.39361 2.41846 2.57306 2.64653 3.00756 3.56143 3.65868 3.79176 4.09347 4.12934 4.27287 4.53140 4.56634 4.60183 4.72544 4.75470 4.88914 4.92998 4.97384 5.07523 5.25384 5.36415 5.58256 5.60773 5.89999 5.93832 6.31273 6.36967 6.38308 6.72892 6.86476 7.27662 7.43643 8.86947 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.004381 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.702744 B = 6390.205903 C = 6957.901172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.043 3.957 3 Si 0.926 3.074 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.502 4.502 8 H 0.047 0.953 9 C 0.013 3.987 10 C 0.153 3.847 11 N -0.711 5.711 12 C 0.229 3.771 13 C -0.146 4.146 14 C -0.083 4.083 15 C 0.558 3.442 16 N -0.829 5.829 17 O -0.552 6.552 18 C -0.060 4.060 19 Cl -0.045 7.045 20 C -0.053 4.053 21 C -0.097 4.097 22 Cl -0.054 7.054 23 C -0.188 4.188 24 C -0.189 4.189 25 H 0.263 0.737 26 H 0.045 0.955 27 H 0.094 0.906 28 H 0.402 0.598 29 H 0.153 0.847 30 H 0.412 0.588 31 H 0.415 0.585 32 H 0.164 0.836 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 -5.444 -8.886 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.158 4.158 3 Si 0.753 3.247 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.012 3.988 10 C 0.030 3.970 11 N -0.335 5.335 12 C 0.118 3.882 13 C -0.170 4.170 14 C -0.088 4.088 15 C 0.343 3.657 16 N -0.395 5.395 17 O -0.431 6.431 18 C -0.090 4.090 19 Cl -0.016 7.016 20 C -0.073 4.073 21 C -0.130 4.130 22 Cl -0.025 7.025 23 C -0.225 4.225 24 C -0.228 4.228 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.112 0.888 28 H 0.239 0.761 29 H 0.171 0.829 30 H 0.244 0.756 31 H 0.248 0.752 32 H 0.181 0.819 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.019 -5.207 -9.433 11.189 hybrid contribution 0.885 0.919 0.651 1.433 sum -2.134 -4.287 -8.781 10.002 Atomic orbital electron populations 1.69966 1.06392 1.27502 1.48406 1.25293 0.95296 1.00808 0.94434 0.86006 0.79652 0.81569 0.77424 1.19815 1.20865 1.21129 1.20717 0.95517 0.91637 1.45991 0.93436 1.19151 0.96942 0.88698 0.94035 1.21118 0.93520 1.02071 0.80255 1.45149 1.10953 1.74871 1.02521 1.17710 0.91591 0.92979 0.85932 1.20756 0.91764 1.06771 0.97709 1.19568 0.93644 1.03176 0.92445 1.18116 0.86908 0.76254 0.84393 1.43631 1.12083 1.74974 1.08767 1.90878 1.71109 1.49782 1.31295 1.20457 0.91909 1.09198 0.87480 1.98369 1.78157 1.95330 1.29742 1.20692 0.91576 0.97415 0.97621 1.20411 0.85343 1.13892 0.93368 1.98354 1.09157 1.96456 1.98535 1.22862 0.95964 1.00436 1.03234 1.22939 0.98460 1.05839 0.95519 0.92719 0.93656 0.88810 0.76127 0.82912 0.75621 0.75192 0.81879 0.89167 0.90649 0.89785 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.38 11.10 21.45 0.24 -43.14 16 2 C 0.04 2.11 5.12 84.65 0.43 2.54 16 3 Si 0.93 40.07 29.57 68.60 2.03 42.10 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.50 -24.23 8.98 25.60 0.23 -24.00 16 8 H 0.05 2.37 7.87 -2.91 -0.02 2.35 16 9 C 0.01 0.52 1.71 -52.90 -0.09 0.43 16 10 C 0.15 5.74 4.61 86.38 0.40 6.14 16 11 N -0.71 -24.02 5.64 -339.40 -1.91 -25.93 16 12 C 0.23 7.04 6.64 38.15 0.25 7.29 16 13 C -0.15 -4.13 8.79 22.66 0.20 -3.93 16 14 C -0.08 -2.38 5.87 -20.08 -0.12 -2.50 16 15 C 0.56 15.51 8.04 86.75 0.70 16.20 16 16 N -0.83 -16.47 8.82 -175.68 -1.55 -18.02 16 17 O -0.55 -18.31 14.79 -3.95 -0.06 -18.37 16 18 C -0.06 -1.70 6.35 22.60 0.14 -1.56 16 19 Cl -0.05 -1.29 26.00 -2.72 -0.07 -1.36 16 20 C -0.05 -1.39 9.58 22.25 0.21 -1.17 16 21 C -0.10 -2.77 6.34 22.50 0.14 -2.62 16 22 Cl -0.05 -1.44 27.58 -2.72 -0.08 -1.51 16 23 C -0.19 -6.75 9.80 30.59 0.30 -6.45 16 24 C -0.19 -7.28 9.89 30.62 0.30 -6.97 16 25 H 0.26 12.45 8.32 -92.71 -0.77 11.68 16 26 H 0.05 1.53 7.78 -2.39 -0.02 1.51 16 27 H 0.09 3.99 5.25 -2.39 -0.01 3.97 16 28 H 0.40 13.75 7.06 -92.71 -0.65 13.09 16 29 H 0.15 3.93 5.09 -2.91 -0.01 3.92 16 30 H 0.41 7.03 6.86 -92.71 -0.64 6.40 16 31 H 0.42 6.60 8.93 -92.71 -0.83 5.77 16 32 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.08 2.91 8.08 -2.39 -0.02 2.89 16 36 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -54.49 334.27 0.77 -53.73 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.94 Total: 29.10 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 3.10 Total: -16.60 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -3.23 Total: -87.09 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.06 Total: -18.37 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.15 Total: -2.87 kcal Total: -54.49 0.77 -53.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.719 kcal (2) G-P(sol) polarization free energy of solvation -54.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds