Wall clock time and date at job start Tue Mar 31 2020 15:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47462 * 2 1 4 4 C 1.46897 * 111.00415 * 196.06405 * 3 2 1 5 5 C 1.50705 * 109.46598 * 66.04985 * 4 3 2 6 6 H 1.07991 * 120.00214 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99526 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99564 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00050 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47009 * 90.00600 * 9 7 5 11 11 H 1.48502 * 109.47162 * 210.00034 * 9 7 5 12 12 H 1.48498 * 109.47439 * 330.00379 * 9 7 5 13 13 C 1.46902 * 110.99679 * 72.10829 * 3 2 1 14 14 C 1.50699 * 109.47232 * 199.61492 * 13 3 2 15 15 C 1.38422 * 120.43993 * 254.53646 * 14 13 3 16 16 C 1.38854 * 118.47675 * 180.02562 * 15 14 13 17 17 Br 1.89103 * 120.36415 * 179.97438 * 16 15 14 18 18 C 1.38175 * 119.26946 * 0.02562 * 16 15 14 19 19 N 1.31936 * 120.81612 * 359.97438 * 18 16 15 20 20 C 1.32263 * 121.66202 * 359.74671 * 19 18 16 21 21 O 1.35694 * 119.67854 * 180.28961 * 20 19 18 22 22 C 1.42895 * 116.99731 * 0.24809 * 21 20 19 23 23 H 1.08999 * 109.46947 * 180.73612 * 1 2 3 24 24 H 1.08991 * 109.46718 * 300.73932 * 1 2 3 25 25 H 1.09003 * 109.46762 * 60.73746 * 1 2 3 26 26 H 1.09005 * 109.46935 * 240.00355 * 2 1 3 27 27 H 1.08999 * 109.47353 * 120.00712 * 2 1 3 28 28 H 1.08996 * 109.47228 * 186.04811 * 4 3 2 29 29 H 1.08998 * 109.47228 * 306.05143 * 4 3 2 30 30 H 0.97001 * 119.99935 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47651 * 319.62432 * 13 3 2 32 32 H 1.09007 * 109.46745 * 79.62000 * 13 3 2 33 33 H 1.08003 * 120.75834 * 359.97438 * 15 14 13 34 34 H 1.07998 * 119.59206 * 179.97438 * 18 16 15 35 35 H 1.08997 * 109.47228 * 179.97438 * 22 21 20 36 36 H 1.09005 * 109.47476 * 299.99778 * 22 21 20 37 37 H 1.09002 * 109.47169 * 59.99667 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4377 1.4420 -0.3795 5 6 3.5915 1.0074 -1.8143 6 1 2.7229 0.7182 -2.3870 7 6 4.8414 0.9790 -2.3957 8 7 4.9756 0.6002 -3.6480 9 14 6.3439 1.4799 -1.4053 10 1 6.9073 0.2872 -0.7232 11 1 7.3656 2.0588 -2.3143 12 1 5.9534 2.4918 -0.3910 13 6 1.7980 2.0216 1.3052 14 6 1.8497 3.5196 1.1486 15 6 2.9513 4.2331 1.5885 16 6 2.9558 5.6119 1.4243 17 35 4.4329 6.6391 2.0065 18 6 1.8685 6.2252 0.8319 19 7 0.8330 5.5172 0.4230 20 6 0.7947 4.2020 0.5571 21 8 -0.2882 3.5130 0.1168 22 6 -1.3401 4.2719 -0.4827 23 1 -0.3633 -1.0276 0.0132 24 1 -0.3632 0.5252 0.8832 25 1 -0.3633 0.5024 -0.8966 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8029 2.4629 -0.2679 29 1 4.0134 0.7777 0.2651 30 1 5.8548 0.5806 -4.0572 31 1 0.8210 1.7301 1.6905 32 1 2.5733 1.7022 2.0016 33 1 3.7878 3.7289 2.0495 34 1 1.8663 7.2973 0.7021 35 1 -2.1424 3.6012 -0.7901 36 1 -1.7251 4.9926 0.2389 37 1 -0.9552 4.8009 -1.3545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595331862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:31 Heat of formation + Delta-G solvation = 9.262449 kcal Electronic energy + Delta-G solvation = -20679.795732 eV Core-core repulsion = 17504.243459 eV Total energy + Delta-G solvation = -3175.552273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.67360 -37.79482 -37.12350 -33.10333 -32.58617 -32.21704 -30.05623 -29.31865 -27.76916 -27.01282 -25.13782 -22.93980 -22.06705 -21.92661 -19.76032 -18.25699 -17.16284 -16.86817 -15.91074 -15.45677 -15.03893 -14.55636 -14.38078 -14.11118 -13.64709 -13.49337 -13.44253 -12.96280 -12.73478 -12.39836 -12.04791 -11.83554 -11.59458 -11.44821 -11.16901 -11.05848 -10.74056 -10.61286 -10.45656 -10.39220 -10.15939 -9.83064 -9.64168 -9.46725 -9.23663 -8.57393 -8.20003 -7.39054 -6.05042 -4.01810 1.05464 1.21007 1.59323 3.23308 3.27314 3.35773 3.37278 3.69441 4.28593 4.41946 4.74152 4.81299 4.97461 5.08521 5.27805 5.36029 5.40869 5.42811 5.59206 5.70929 5.75463 5.86717 5.91701 5.99551 6.09509 6.13534 6.33617 6.38796 6.69805 6.72162 6.92000 6.98808 7.31673 7.60927 7.80043 7.91344 8.05379 8.66005 9.04235 9.57007 11.08096 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.006193 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.408994 B = 4520.336482 C = 6567.879755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 N -0.517 5.517 4 C 0.161 3.839 5 C -0.506 4.506 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.870 3.130 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.100 3.900 14 C -0.123 4.123 15 C -0.011 4.011 16 C -0.185 4.185 17 Br -0.045 7.045 18 C 0.167 3.833 19 N -0.537 5.537 20 C 0.359 3.641 21 O -0.280 6.280 22 C 0.039 3.961 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.018 0.982 28 H 0.026 0.974 29 H -0.017 1.017 30 H 0.263 0.737 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 10.787 13.470 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 N -0.241 5.241 4 C 0.035 3.965 5 C -0.545 4.545 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.698 3.302 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.029 4.029 14 C -0.128 4.128 15 C -0.038 4.038 16 C -0.267 4.267 17 Br 0.039 6.961 18 C 0.009 3.991 19 N -0.261 5.261 20 C 0.179 3.821 21 O -0.185 6.185 22 C -0.057 4.057 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.001 0.999 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.756 11.495 12.784 18.861 hybrid contribution 1.785 -0.501 1.059 2.136 sum -5.971 10.995 13.843 18.659 Atomic orbital electron populations 1.21760 0.96172 0.99950 1.01931 1.21997 0.94560 0.89292 1.01180 1.61926 1.21215 1.16662 1.24285 1.20215 0.83319 0.95999 0.96981 1.21013 0.94738 1.44009 0.94691 0.90068 1.24884 0.98612 0.94964 0.94779 1.69889 1.23650 1.48246 1.12111 0.86931 0.83423 0.79336 0.80552 1.20323 1.21117 1.19071 1.20843 1.01242 0.88246 0.92532 1.19903 0.92755 0.97745 1.02366 1.21309 0.96614 0.91537 0.94383 1.22552 0.97022 0.95461 1.11676 1.96666 1.40376 1.70197 1.88877 1.22284 0.86403 0.99643 0.90758 1.67455 1.28403 1.06802 1.23439 1.19659 0.87101 0.86726 0.88564 1.86392 1.25644 1.34240 1.72199 1.22866 0.88272 0.96681 0.97859 0.93505 0.93581 0.92037 0.89021 0.96425 0.95570 0.99941 0.92700 0.89892 0.94514 0.83718 0.81933 0.88675 0.92750 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.99 37.16 0.37 -1.80 16 2 C 0.06 1.07 5.52 -3.82 -0.02 1.05 16 3 N -0.52 -10.59 4.37 -237.52 -1.04 -11.63 16 4 C 0.16 3.87 3.62 -4.97 -0.02 3.85 16 5 C -0.51 -14.34 8.84 -34.44 -0.30 -14.64 16 6 H 0.08 2.51 7.50 -52.49 -0.39 2.11 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 9 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C 0.10 1.69 4.59 -4.98 -0.02 1.67 16 14 C -0.12 -2.07 4.83 -104.32 -0.50 -2.57 16 15 C -0.01 -0.18 8.94 -39.29 -0.35 -0.53 16 16 C -0.19 -2.66 6.24 -39.38 -0.25 -2.91 16 17 Br -0.05 -0.57 33.73 -68.01 -2.29 -2.86 16 18 C 0.17 2.32 10.94 -17.53 -0.19 2.13 16 19 N -0.54 -8.34 9.21 -13.31 -0.12 -8.46 16 20 C 0.36 5.97 7.47 -17.13 -0.13 5.85 16 21 O -0.28 -4.44 9.84 -18.78 -0.18 -4.62 16 22 C 0.04 0.47 10.38 101.05 1.05 1.52 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.65 6.52 -51.93 -0.34 0.32 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.96 6.59 -51.93 -0.34 1.62 16 27 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 28 H 0.03 0.65 5.97 -51.93 -0.31 0.34 16 29 H -0.02 -0.41 7.55 -51.93 -0.39 -0.80 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.08 1.27 6.14 -51.93 -0.32 0.95 16 32 H 0.04 0.59 7.85 -51.93 -0.41 0.18 16 33 H 0.15 2.11 8.04 -52.48 -0.42 1.69 16 34 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -31.20 327.37 -8.11 -39.31 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.04 Total: -2.30 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.46 Total: -4.47 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.39 Total: -46.98 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.18 Total: -4.62 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.20 -8.11 -39.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.574 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds