Wall clock time and date at job start Tue Mar 31 2020 15:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47462 * 2 1 4 4 C 1.46897 * 111.00415 * 196.06405 * 3 2 1 5 5 C 1.50705 * 109.46598 * 66.04985 * 4 3 2 6 6 H 1.07991 * 120.00214 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99526 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99564 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00050 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47009 * 90.00600 * 9 7 5 11 11 H 1.48502 * 109.47162 * 210.00034 * 9 7 5 12 12 H 1.48498 * 109.47439 * 330.00379 * 9 7 5 13 13 C 1.46902 * 110.99679 * 72.10829 * 3 2 1 14 14 C 1.50699 * 109.47232 * 199.61492 * 13 3 2 15 15 C 1.38422 * 120.43993 * 254.53646 * 14 13 3 16 16 C 1.38854 * 118.47675 * 180.02562 * 15 14 13 17 17 Br 1.89103 * 120.36415 * 179.97438 * 16 15 14 18 18 C 1.38175 * 119.26946 * 0.02562 * 16 15 14 19 19 N 1.31936 * 120.81612 * 359.97438 * 18 16 15 20 20 C 1.32263 * 121.66202 * 359.74671 * 19 18 16 21 21 O 1.35694 * 119.67854 * 180.28961 * 20 19 18 22 22 C 1.42895 * 116.99731 * 0.24809 * 21 20 19 23 23 H 1.08999 * 109.46947 * 180.73612 * 1 2 3 24 24 H 1.08991 * 109.46718 * 300.73932 * 1 2 3 25 25 H 1.09003 * 109.46762 * 60.73746 * 1 2 3 26 26 H 1.09005 * 109.46935 * 240.00355 * 2 1 3 27 27 H 1.08999 * 109.47353 * 120.00712 * 2 1 3 28 28 H 1.08996 * 109.47228 * 186.04811 * 4 3 2 29 29 H 1.08998 * 109.47228 * 306.05143 * 4 3 2 30 30 H 0.97001 * 119.99935 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47651 * 319.62432 * 13 3 2 32 32 H 1.09007 * 109.46745 * 79.62000 * 13 3 2 33 33 H 1.08003 * 120.75834 * 359.97438 * 15 14 13 34 34 H 1.07998 * 119.59206 * 179.97438 * 18 16 15 35 35 H 1.08997 * 109.47228 * 179.97438 * 22 21 20 36 36 H 1.09005 * 109.47476 * 299.99778 * 22 21 20 37 37 H 1.09002 * 109.47169 * 59.99667 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4377 1.4420 -0.3795 5 6 3.5915 1.0074 -1.8143 6 1 2.7229 0.7182 -2.3870 7 6 4.8414 0.9790 -2.3957 8 7 4.9756 0.6002 -3.6480 9 14 6.3439 1.4799 -1.4053 10 1 6.9073 0.2872 -0.7232 11 1 7.3656 2.0588 -2.3143 12 1 5.9534 2.4918 -0.3910 13 6 1.7980 2.0216 1.3052 14 6 1.8497 3.5196 1.1486 15 6 2.9513 4.2331 1.5885 16 6 2.9558 5.6119 1.4243 17 35 4.4329 6.6391 2.0065 18 6 1.8685 6.2252 0.8319 19 7 0.8330 5.5172 0.4230 20 6 0.7947 4.2020 0.5571 21 8 -0.2882 3.5130 0.1168 22 6 -1.3401 4.2719 -0.4827 23 1 -0.3633 -1.0276 0.0132 24 1 -0.3632 0.5252 0.8832 25 1 -0.3633 0.5024 -0.8966 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8029 2.4629 -0.2679 29 1 4.0134 0.7777 0.2651 30 1 5.8548 0.5806 -4.0572 31 1 0.8210 1.7301 1.6905 32 1 2.5733 1.7022 2.0016 33 1 3.7878 3.7289 2.0495 34 1 1.8663 7.2973 0.7021 35 1 -2.1424 3.6012 -0.7901 36 1 -1.7251 4.9926 0.2389 37 1 -0.9552 4.8009 -1.3545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595331862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:30 Heat of formation + Delta-G solvation = -12.703185 kcal Electronic energy + Delta-G solvation = -20680.748233 eV Core-core repulsion = 17504.243459 eV Total energy + Delta-G solvation = -3176.504774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82689 -38.94995 -38.62745 -34.83022 -34.15322 -33.41295 -31.67601 -30.45327 -29.36168 -28.05771 -26.64208 -24.12405 -23.84197 -23.19479 -21.32300 -19.38257 -19.00522 -18.32052 -17.07309 -16.78941 -16.59067 -16.05525 -15.88309 -15.31510 -15.18853 -14.79912 -14.62002 -14.50366 -14.19851 -14.08390 -13.59062 -12.92052 -12.89264 -12.71546 -12.62450 -12.59915 -12.40339 -12.01273 -11.87129 -11.68107 -11.61477 -11.47800 -11.38333 -10.78859 -10.75700 -10.66626 -9.34087 -8.97104 -8.28232 -6.30217 -0.09085 0.04222 0.51448 1.31344 1.34180 1.43934 2.14729 2.33112 2.52302 3.05214 3.19903 3.33225 3.72868 3.75610 3.88602 4.18045 4.29213 4.45200 4.47566 4.49206 4.55445 4.60792 4.76230 4.77640 4.80384 4.85501 4.92837 5.04846 5.09590 5.20974 5.33998 5.49069 5.56814 6.02429 6.20196 6.42390 6.64574 6.69089 6.76473 7.32938 8.88468 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.006193 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.408994 B = 4520.336482 C = 6567.879755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.057 3.943 3 N -0.532 5.532 4 C 0.175 3.825 5 C -0.509 4.509 6 H 0.037 0.963 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.247 1.247 13 C 0.105 3.895 14 C -0.146 4.146 15 C -0.017 4.017 16 C -0.191 4.191 17 Br -0.026 7.026 18 C 0.169 3.831 19 N -0.545 5.545 20 C 0.346 3.654 21 O -0.296 6.296 22 C 0.036 3.964 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.023 0.977 29 H -0.013 1.013 30 H 0.265 0.735 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.153 0.847 34 H 0.192 0.808 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 11.944 15.701 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.071 4.071 3 N -0.257 5.257 4 C 0.048 3.952 5 C -0.548 4.548 6 H 0.055 0.945 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.761 3.239 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.171 1.171 13 C -0.023 4.023 14 C -0.151 4.151 15 C -0.044 4.044 16 C -0.273 4.273 17 Br 0.058 6.942 18 C 0.011 3.989 19 N -0.269 5.269 20 C 0.166 3.834 21 O -0.201 6.201 22 C -0.059 4.059 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.004 0.996 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.171 0.829 34 H 0.209 0.791 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.627 12.653 15.036 21.079 hybrid contribution 1.645 -0.820 0.331 1.868 sum -5.982 11.832 15.366 20.296 Atomic orbital electron populations 1.21645 0.93494 1.01465 1.01897 1.21983 0.96724 0.88383 0.99983 1.61818 1.18824 1.17828 1.27189 1.19903 0.85850 0.95313 0.94142 1.21247 0.93412 1.43393 0.96730 0.94456 1.25795 1.02160 0.95036 0.95830 1.70048 1.24605 1.50069 1.14205 0.85854 0.78986 0.79773 0.79305 1.19007 1.20930 1.17069 1.20862 1.02483 0.88299 0.90663 1.19971 0.93585 0.97655 1.03843 1.21498 0.96484 0.92225 0.94179 1.22700 0.97832 0.95362 1.11429 1.96683 1.39321 1.69499 1.88661 1.22810 0.85717 1.00865 0.89503 1.67511 1.29127 1.06510 1.23761 1.19849 0.87468 0.87212 0.88831 1.86357 1.26161 1.35273 1.72338 1.23067 0.87867 0.97393 0.97568 0.91286 0.91820 0.93675 0.92886 0.94831 0.95865 0.99560 0.92568 0.88262 0.93311 0.82906 0.79107 0.86338 0.91490 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.99 71.98 0.72 -3.06 16 2 C 0.06 2.12 5.52 86.31 0.48 2.59 16 3 N -0.53 -21.60 4.37 -905.37 -3.96 -25.56 16 4 C 0.18 8.34 3.62 85.56 0.31 8.65 16 5 C -0.51 -29.65 8.84 25.60 0.23 -29.43 16 6 H 0.04 2.44 7.50 -2.92 -0.02 2.41 16 7 C 0.01 0.52 5.47 84.66 0.46 0.99 16 8 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 9 Si 0.94 44.36 27.47 68.60 1.88 46.25 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 13 C 0.10 3.38 4.59 85.56 0.39 3.77 16 14 C -0.15 -4.70 4.83 -19.67 -0.10 -4.79 16 15 C -0.02 -0.49 8.94 22.46 0.20 -0.29 16 16 C -0.19 -5.09 6.24 22.40 0.14 -4.95 16 17 Br -0.03 -0.58 33.73 -20.37 -0.69 -1.27 16 18 C 0.17 4.35 10.94 84.66 0.93 5.27 16 19 N -0.54 -16.14 9.21 -308.87 -2.85 -18.99 16 20 C 0.35 11.13 7.47 84.78 0.63 11.76 16 21 O -0.30 -9.10 9.84 -90.13 -0.89 -9.99 16 22 C 0.04 0.83 10.38 113.37 1.18 2.00 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 1.66 6.52 -2.39 -0.02 1.65 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 26 H 0.05 2.36 6.59 -2.38 -0.02 2.34 16 27 H 0.03 1.13 8.05 -2.39 -0.02 1.11 16 28 H 0.02 1.13 5.97 -2.39 -0.01 1.11 16 29 H -0.01 -0.61 7.55 -2.39 -0.02 -0.63 16 30 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.10 2.82 6.14 -2.39 -0.01 2.81 16 32 H 0.05 1.45 7.85 -2.38 -0.02 1.43 16 33 H 0.15 4.11 8.04 -2.91 -0.02 4.08 16 34 H 0.19 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 1.35 8.10 -2.38 -0.02 1.33 16 37 H 0.05 1.21 8.11 -2.39 -0.02 1.20 16 Total: -1.00 -68.49 327.37 0.39 -68.10 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.01 Total: 8.60 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.57 Total: -7.49 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -6.50 Total: -104.20 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.89 Total: -9.99 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.69 Total: -1.27 kcal Total: -68.49 0.39 -68.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.402 kcal (2) G-P(sol) polarization free energy of solvation -68.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds