Wall clock time and date at job start Tue Mar 31 2020 15:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47483 * 2 1 4 4 H 1.09002 * 109.47181 * 185.16253 * 3 2 1 5 5 C 1.50702 * 109.47056 * 305.16413 * 3 2 1 6 6 H 1.08000 * 119.99543 * 119.99803 * 5 3 2 7 7 C 1.37875 * 119.99818 * 299.99991 * 5 3 2 8 8 N 1.31508 * 120.00416 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99798 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47226 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47264 * 119.99771 * 9 7 5 12 12 H 1.48501 * 109.46875 * 239.99890 * 9 7 5 13 13 N 1.46904 * 109.46840 * 65.16353 * 3 2 1 14 14 C 1.46901 * 111.00198 * 85.92258 * 13 3 2 15 15 C 1.50696 * 109.46972 * 174.74241 * 14 13 3 16 16 C 1.38425 * 120.43216 * 260.01839 * 15 14 13 17 17 C 1.38855 * 118.46975 * 179.97438 * 16 15 14 18 18 Br 1.89105 * 120.36301 * 179.97438 * 17 16 15 19 19 C 1.38169 * 119.27177 * 0.02562 * 17 16 15 20 20 N 1.31940 * 120.82009 * 359.72113 * 19 17 16 21 21 C 1.32266 * 121.65490 * 0.56332 * 20 19 17 22 22 O 1.35688 * 119.67229 * 179.70980 * 21 20 19 23 23 C 1.42901 * 116.99904 * 359.73430 * 22 21 20 24 24 H 1.08994 * 109.47123 * 174.84529 * 1 2 3 25 25 H 1.08994 * 109.47025 * 294.85526 * 1 2 3 26 26 H 1.09003 * 109.47031 * 54.85157 * 1 2 3 27 27 H 1.09005 * 109.47234 * 239.99968 * 2 1 3 28 28 H 1.09001 * 109.47210 * 120.00590 * 2 1 3 29 29 H 0.96995 * 120.00632 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99867 * 321.96603 * 13 3 2 31 31 H 1.09000 * 109.46753 * 54.73652 * 14 13 3 32 32 H 1.09001 * 109.46878 * 294.74246 * 14 13 3 33 33 H 1.07992 * 120.76500 * 359.95999 * 16 15 14 34 34 H 1.08009 * 119.59218 * 180.02562 * 19 17 16 35 35 H 1.08999 * 109.47476 * 60.00292 * 23 22 21 36 36 H 1.09002 * 109.46682 * 179.97438 * 23 22 21 37 37 H 1.08994 * 109.47231 * 299.99258 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4438 -0.0925 5 6 1.4361 2.1888 -1.1615 6 1 0.8270 3.0628 -0.9837 7 6 1.6611 1.7559 -2.4511 8 7 2.4032 0.6920 -2.6676 9 14 0.9130 2.6816 -3.8909 10 1 0.1267 3.8346 -3.3834 11 1 1.9961 3.1734 -4.7798 12 1 0.0209 1.7722 -4.6541 13 7 1.6549 2.0980 1.2569 14 6 2.6437 1.8369 2.3115 15 6 2.2846 2.6270 3.5435 16 6 2.9331 3.8166 3.8272 17 6 2.5696 4.5118 4.9729 18 35 3.4210 6.1421 5.4124 19 6 1.5797 3.9986 5.7889 20 7 0.9766 2.8642 5.4886 21 6 1.2992 2.1712 4.4092 22 8 0.6568 1.0063 4.1421 23 6 -0.3471 0.5913 5.0705 24 1 -0.3633 -1.0235 -0.0923 25 1 -0.3633 0.4319 0.9324 26 1 -0.3633 0.5916 -0.8403 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.5612 0.3872 -3.5747 30 1 0.7323 1.8101 1.5470 31 1 3.6328 2.1352 1.9639 32 1 2.6479 0.7734 2.5503 33 1 3.7041 4.1952 3.1726 34 1 1.2926 4.5353 6.6812 35 1 -1.1276 1.3503 5.1251 36 1 -0.7809 -0.3521 4.7390 37 1 0.1010 0.4594 6.0553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595531896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:10 Heat of formation + Delta-G solvation = -2.434527 kcal Electronic energy + Delta-G solvation = -20262.018605 eV Core-core repulsion = 17085.959113 eV Total energy + Delta-G solvation = -3176.059492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78862 -37.94852 -36.61473 -33.74157 -32.68976 -31.66225 -30.08507 -29.25857 -27.24972 -26.66570 -24.76978 -23.18345 -23.02126 -21.54563 -19.30122 -18.42155 -17.27393 -16.31323 -16.06729 -15.38551 -14.80169 -14.66952 -14.36016 -14.22998 -13.72202 -13.40233 -13.10472 -12.81142 -12.46614 -12.21316 -11.91641 -11.71756 -11.68276 -11.53237 -10.92231 -10.76986 -10.70197 -10.54235 -10.48862 -10.00096 -9.96267 -9.68945 -9.57412 -9.48643 -8.96325 -8.35538 -8.33351 -7.21914 -5.96419 -3.97707 0.91446 1.12565 1.49075 3.06788 3.32308 3.40645 3.45759 3.57501 4.15726 4.45997 4.72524 4.79601 4.96079 5.24130 5.27396 5.35387 5.40636 5.48582 5.61273 5.65328 5.81975 6.08128 6.26345 6.35410 6.40437 6.42252 6.60189 6.94871 7.13784 7.27516 7.29990 7.54108 7.64651 7.72316 7.90129 8.28559 8.54364 8.61819 9.08167 9.65897 11.10570 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.003710 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.985718 B = 7545.100615 C = 9011.091024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.144 4.144 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.106 3.894 15 C -0.123 4.123 16 C -0.002 4.002 17 C -0.183 4.183 18 Br -0.043 7.043 19 C 0.161 3.839 20 N -0.534 5.534 21 C 0.337 3.663 22 O -0.295 6.295 23 C 0.039 3.961 24 H 0.022 0.978 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.012 0.988 29 H 0.258 0.742 30 H 0.331 0.669 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.152 0.848 34 H 0.164 0.836 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 5.464 18.980 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.309 5.309 14 C -0.024 4.024 15 C -0.127 4.127 16 C -0.029 4.029 17 C -0.265 4.265 18 Br 0.042 6.958 19 C 0.003 3.997 20 N -0.258 5.258 21 C 0.157 3.843 22 O -0.200 6.200 23 C -0.056 4.056 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.250 6.026 19.120 20.048 hybrid contribution -0.310 -0.535 -1.006 1.181 sum -0.060 5.491 18.114 18.928 Atomic orbital electron populations 1.21582 0.97713 0.98593 1.00747 1.22086 0.95047 1.01005 1.00234 1.19244 0.95991 0.88704 0.85254 0.94899 1.21089 1.30408 1.11438 0.89600 0.92023 1.24897 0.95559 0.95163 0.98688 1.69885 1.39083 1.24032 1.20565 0.86533 0.78967 0.79899 0.82576 1.19781 1.21197 1.21265 1.60927 1.03810 1.63108 1.03047 1.20686 0.97835 0.95650 0.88208 1.20157 0.97079 0.97104 0.98337 1.21339 0.97043 0.91179 0.93363 1.22639 1.04742 0.97406 1.01686 1.96687 1.78982 1.26719 1.93462 1.22295 0.89738 0.90188 0.97450 1.67429 1.29930 1.09336 1.19075 1.19836 0.89372 0.85888 0.89185 1.86345 1.50505 1.34048 1.49135 1.22890 0.89776 1.00345 0.92578 0.95852 0.95311 0.91369 0.88968 0.96971 0.93196 0.85109 0.90440 0.94404 0.83065 0.81925 0.92177 0.88483 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.40 37.16 0.35 -2.41 16 2 C -0.14 -3.35 5.51 -26.73 -0.15 -3.50 16 3 C 0.22 5.23 2.33 -68.86 -0.16 5.07 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.49 -13.02 7.25 -34.44 -0.25 -13.27 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -25.00 11.38 55.43 0.63 -24.37 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -14.23 6.19 -109.22 -0.68 -14.90 16 14 C 0.11 1.89 5.32 -4.98 -0.03 1.86 16 15 C -0.12 -1.92 5.47 -104.32 -0.57 -2.49 16 16 C 0.00 -0.03 9.58 -39.28 -0.38 -0.41 16 17 C -0.18 -2.28 6.24 -39.38 -0.25 -2.52 16 18 Br -0.04 -0.45 33.73 -68.01 -2.29 -2.75 16 19 C 0.16 1.96 10.94 -17.53 -0.19 1.77 16 20 N -0.53 -7.43 9.21 -13.31 -0.12 -7.55 16 21 C 0.34 5.14 7.47 -17.13 -0.13 5.02 16 22 O -0.29 -4.42 9.72 -18.77 -0.18 -4.60 16 23 C 0.04 0.44 10.38 101.05 1.05 1.49 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.03 0.56 6.63 -51.93 -0.34 0.22 16 26 H 0.07 1.60 6.85 -51.93 -0.36 1.24 16 27 H 0.09 2.40 6.23 -51.93 -0.32 2.08 16 28 H 0.01 0.26 7.50 -51.93 -0.39 -0.13 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.33 6.90 6.68 -39.29 -0.26 6.64 16 31 H 0.08 1.35 7.81 -51.93 -0.41 0.94 16 32 H 0.04 0.68 7.26 -51.93 -0.38 0.31 16 33 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 34 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -28.25 327.68 -8.46 -36.71 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.94 Total: 4.25 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.79 Total: -7.93 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.17 Total: -46.83 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.18 Total: -4.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.29 Total: -2.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.25 -8.46 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595531896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.276 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds