Wall clock time and date at job start Tue Mar 31 2020 15:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47483 * 2 1 4 4 H 1.09002 * 109.47181 * 185.16253 * 3 2 1 5 5 C 1.50702 * 109.47056 * 305.16413 * 3 2 1 6 6 H 1.08000 * 119.99543 * 119.99803 * 5 3 2 7 7 C 1.37875 * 119.99818 * 299.99991 * 5 3 2 8 8 N 1.31508 * 120.00416 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99798 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47226 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47264 * 119.99771 * 9 7 5 12 12 H 1.48501 * 109.46875 * 239.99890 * 9 7 5 13 13 N 1.46904 * 109.46840 * 65.16353 * 3 2 1 14 14 C 1.46901 * 111.00198 * 85.92258 * 13 3 2 15 15 C 1.50696 * 109.46972 * 174.74241 * 14 13 3 16 16 C 1.38425 * 120.43216 * 260.01839 * 15 14 13 17 17 C 1.38855 * 118.46975 * 179.97438 * 16 15 14 18 18 Br 1.89105 * 120.36301 * 179.97438 * 17 16 15 19 19 C 1.38169 * 119.27177 * 0.02562 * 17 16 15 20 20 N 1.31940 * 120.82009 * 359.72113 * 19 17 16 21 21 C 1.32266 * 121.65490 * 0.56332 * 20 19 17 22 22 O 1.35688 * 119.67229 * 179.70980 * 21 20 19 23 23 C 1.42901 * 116.99904 * 359.73430 * 22 21 20 24 24 H 1.08994 * 109.47123 * 174.84529 * 1 2 3 25 25 H 1.08994 * 109.47025 * 294.85526 * 1 2 3 26 26 H 1.09003 * 109.47031 * 54.85157 * 1 2 3 27 27 H 1.09005 * 109.47234 * 239.99968 * 2 1 3 28 28 H 1.09001 * 109.47210 * 120.00590 * 2 1 3 29 29 H 0.96995 * 120.00632 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99867 * 321.96603 * 13 3 2 31 31 H 1.09000 * 109.46753 * 54.73652 * 14 13 3 32 32 H 1.09001 * 109.46878 * 294.74246 * 14 13 3 33 33 H 1.07992 * 120.76500 * 359.95999 * 16 15 14 34 34 H 1.08009 * 119.59218 * 180.02562 * 19 17 16 35 35 H 1.08999 * 109.47476 * 60.00292 * 23 22 21 36 36 H 1.09002 * 109.46682 * 179.97438 * 23 22 21 37 37 H 1.08994 * 109.47231 * 299.99258 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4438 -0.0925 5 6 1.4361 2.1888 -1.1615 6 1 0.8270 3.0628 -0.9837 7 6 1.6611 1.7559 -2.4511 8 7 2.4032 0.6920 -2.6676 9 14 0.9130 2.6816 -3.8909 10 1 0.1267 3.8346 -3.3834 11 1 1.9961 3.1734 -4.7798 12 1 0.0209 1.7722 -4.6541 13 7 1.6549 2.0980 1.2569 14 6 2.6437 1.8369 2.3115 15 6 2.2846 2.6270 3.5435 16 6 2.9331 3.8166 3.8272 17 6 2.5696 4.5118 4.9729 18 35 3.4210 6.1421 5.4124 19 6 1.5797 3.9986 5.7889 20 7 0.9766 2.8642 5.4886 21 6 1.2992 2.1712 4.4092 22 8 0.6568 1.0063 4.1421 23 6 -0.3471 0.5913 5.0705 24 1 -0.3633 -1.0235 -0.0923 25 1 -0.3633 0.4319 0.9324 26 1 -0.3633 0.5916 -0.8403 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.5612 0.3872 -3.5747 30 1 0.7323 1.8101 1.5470 31 1 3.6328 2.1352 1.9639 32 1 2.6479 0.7734 2.5503 33 1 3.7041 4.1952 3.1726 34 1 1.2926 4.5353 6.6812 35 1 -1.1276 1.3503 5.1251 36 1 -0.7809 -0.3521 4.7390 37 1 0.1010 0.4594 6.0553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595531896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:09 Heat of formation + Delta-G solvation = -20.932671 kcal Electronic energy + Delta-G solvation = -20262.820745 eV Core-core repulsion = 17085.959113 eV Total energy + Delta-G solvation = -3176.861632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.86045 -38.98861 -38.35127 -35.25521 -33.84720 -33.33624 -31.61877 -30.29716 -28.53359 -28.10089 -26.33655 -25.02149 -24.08559 -22.78485 -21.17958 -19.45774 -18.33979 -18.21796 -17.14770 -16.83933 -16.56760 -16.08212 -15.62156 -15.36262 -15.01788 -14.78078 -14.52931 -14.30714 -14.17073 -13.74168 -13.29064 -13.16290 -12.82358 -12.70903 -12.64565 -12.47963 -12.42271 -11.87724 -11.76211 -11.69216 -11.46099 -11.39922 -10.99524 -10.74525 -10.67840 -10.41141 -9.41707 -8.92455 -8.03268 -6.11182 -0.13835 0.04429 0.52650 1.42712 1.45974 1.56751 2.06731 2.45367 2.52003 3.15794 3.25679 3.62464 3.74411 3.84520 3.94670 4.29315 4.40149 4.43681 4.44790 4.58314 4.62562 4.71070 4.73937 4.77876 4.83926 4.98923 5.14858 5.22043 5.37987 5.44990 5.71857 5.76276 5.85187 6.11488 6.33674 6.58984 6.69548 6.82014 7.00356 7.56279 9.02181 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.003710 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.985718 B = 7545.100615 C = 9011.091024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.003 0.997 5 C -0.497 4.497 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.282 1.282 13 N -0.680 5.680 14 C 0.115 3.885 15 C -0.145 4.145 16 C -0.002 4.002 17 C -0.185 4.185 18 Br -0.022 7.022 19 C 0.169 3.831 20 N -0.538 5.538 21 C 0.330 3.670 22 O -0.314 6.314 23 C 0.035 3.965 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.259 0.741 30 H 0.332 0.668 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.156 0.844 34 H 0.195 0.805 35 H 0.061 0.939 36 H 0.117 0.883 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 6.323 20.345 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.176 4.176 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.536 4.536 6 H 0.068 0.932 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 N -0.310 5.310 14 C -0.015 4.015 15 C -0.149 4.149 16 C -0.029 4.029 17 C -0.267 4.267 18 Br 0.063 6.937 19 C 0.011 3.989 20 N -0.261 5.261 21 C 0.150 3.850 22 O -0.221 6.221 23 C -0.059 4.059 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.150 0.850 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.174 0.826 34 H 0.212 0.788 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.540 6.887 20.502 21.634 hybrid contribution -0.033 -0.743 -1.313 1.509 sum -0.573 6.143 19.189 20.156 Atomic orbital electron populations 1.21451 0.96099 0.99491 1.00572 1.21928 0.96396 0.99985 0.99300 1.18993 0.93892 0.89425 0.86359 0.97956 1.21270 1.30265 1.11235 0.90804 0.93204 1.25541 0.95943 0.95866 1.00874 1.70006 1.39961 1.25066 1.20960 0.85638 0.78214 0.78805 0.79744 1.19574 1.20993 1.20817 1.60797 1.04555 1.62735 1.02959 1.20557 0.96783 0.95900 0.88286 1.19943 0.98831 0.98080 0.98055 1.21457 0.96818 0.90700 0.93967 1.22737 1.04793 0.98078 1.01102 1.96713 1.78652 1.25160 1.93210 1.22870 0.88688 0.89451 0.97912 1.67516 1.30189 1.09890 1.18551 1.19896 0.89352 0.86228 0.89475 1.86312 1.51271 1.34040 1.50461 1.23116 0.89085 1.01180 0.92548 0.93966 0.93647 0.93676 0.91911 0.95740 0.93215 0.84983 0.90789 0.94920 0.82589 0.78794 0.92063 0.86521 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.40 71.98 0.68 -4.33 16 2 C -0.14 -6.39 5.51 30.59 0.17 -6.22 16 3 C 0.22 10.98 2.33 44.17 0.10 11.09 16 4 H 0.00 0.14 7.70 -2.39 -0.02 0.12 16 5 C -0.50 -26.98 7.25 25.60 0.19 -26.79 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.02 0.87 5.28 84.66 0.45 1.32 16 8 N -0.92 -52.11 11.38 21.45 0.24 -51.87 16 9 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 N -0.68 -28.77 6.19 -499.46 -3.09 -31.87 16 14 C 0.11 4.11 5.32 85.56 0.46 4.57 16 15 C -0.14 -4.47 5.47 -19.67 -0.11 -4.58 16 16 C 0.00 -0.06 9.58 22.46 0.22 0.15 16 17 C -0.19 -4.25 6.24 22.40 0.14 -4.11 16 18 Br -0.02 -0.41 33.73 -20.37 -0.69 -1.10 16 19 C 0.17 3.68 10.94 84.66 0.93 4.61 16 20 N -0.54 -13.96 9.21 -308.87 -2.85 -16.81 16 21 C 0.33 9.74 7.47 84.78 0.63 10.37 16 22 O -0.31 -9.14 9.72 -90.07 -0.88 -10.01 16 23 C 0.04 0.72 10.38 113.37 1.18 1.90 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.04 1.73 6.63 -2.39 -0.02 1.72 16 26 H 0.04 2.10 6.85 -2.39 -0.02 2.08 16 27 H 0.06 3.33 6.23 -2.38 -0.01 3.31 16 28 H 0.02 1.05 7.50 -2.39 -0.02 1.03 16 29 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.33 13.80 6.68 -89.69 -0.60 13.20 16 31 H 0.07 2.65 7.81 -2.39 -0.02 2.63 16 32 H 0.03 1.20 7.26 -2.39 -0.02 1.18 16 33 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 34 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 36 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.22 8.11 -2.39 -0.02 1.20 16 Total: -1.00 -60.12 327.68 0.27 -59.85 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.48 Total: 18.03 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 5.02 Total: -12.02 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -5.70 Total: -100.54 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.88 Total: -10.01 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -0.69 Total: -1.10 kcal Total: -60.12 0.27 -59.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595531896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.919 kcal (2) G-P(sol) polarization free energy of solvation -60.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds