Wall clock time and date at job start Tue Mar 31 2020 15:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35702 * 116.99610 * 2 1 4 4 C 1.38619 * 119.63597 * 180.02562 * 3 2 1 5 5 C 1.39175 * 119.03137 * 179.70216 * 4 3 2 6 6 N 1.39234 * 120.83914 * 180.27723 * 5 4 3 7 7 C 1.46509 * 119.99746 * 0.24486 * 6 5 4 8 8 C 1.53005 * 109.46966 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46607 * 299.99510 * 8 7 6 10 10 C 1.52998 * 109.47555 * 59.99497 * 8 7 6 11 11 C 1.50701 * 109.46808 * 179.97438 * 8 7 6 12 12 H 1.07995 * 120.00105 * 1.34145 * 11 8 7 13 13 C 1.37881 * 119.99702 * 181.34488 * 11 8 7 14 14 N 1.31509 * 119.99910 * 193.97530 * 13 11 8 15 15 Si 1.86803 * 120.00118 * 13.97379 * 13 11 8 16 16 H 1.48504 * 109.46925 * 84.54794 * 15 13 11 17 17 H 1.48494 * 109.47244 * 204.55086 * 15 13 11 18 18 H 1.48500 * 109.46878 * 324.54926 * 15 13 11 19 19 C 1.39707 * 118.32998 * 0.51472 * 5 4 3 20 20 Br 1.89090 * 120.41152 * 179.78456 * 19 5 4 21 21 C 1.37814 * 119.17672 * 359.50229 * 19 5 4 22 22 N 1.32100 * 120.89929 * 0.23955 * 21 19 5 23 23 H 1.09000 * 109.47502 * 300.00300 * 1 2 3 24 24 H 1.09002 * 109.46668 * 60.00854 * 1 2 3 25 25 H 1.09004 * 109.46694 * 180.02562 * 1 2 3 26 26 H 1.08010 * 120.48426 * 359.97438 * 4 3 2 27 27 H 0.96999 * 120.00424 * 180.24307 * 6 5 4 28 28 H 1.09008 * 109.46820 * 299.99841 * 7 6 5 29 29 H 1.08988 * 109.47375 * 60.00084 * 7 6 5 30 30 H 1.09003 * 109.47385 * 69.37079 * 9 8 7 31 31 H 1.09003 * 109.46919 * 189.37238 * 9 8 7 32 32 H 1.09001 * 109.47376 * 309.37033 * 9 8 7 33 33 H 1.09003 * 109.46536 * 59.99798 * 10 8 7 34 34 H 1.08992 * 109.47015 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.47056 * 300.00733 * 10 8 7 36 36 H 0.96993 * 120.00255 * 179.97438 * 14 13 11 37 37 H 1.07991 * 119.55176 * 180.24981 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4297 1.2730 -0.0005 5 6 4.0483 2.5197 -0.0069 6 7 5.4365 2.6276 -0.0134 7 6 6.2651 1.4194 -0.0191 8 6 7.7432 1.8148 -0.0250 9 6 8.0438 2.6453 -1.2743 10 6 8.0552 2.6413 1.2241 11 6 8.5955 0.5719 -0.0303 12 1 8.1297 -0.4022 -0.0514 13 6 9.9700 0.6786 -0.0081 14 7 10.7153 -0.3683 -0.2872 15 14 10.7735 2.3102 0.4184 16 1 10.8721 2.4425 1.8942 17 1 12.1336 2.3623 -0.1753 18 1 9.9534 3.4227 -0.1247 19 6 3.2415 3.6602 -0.0014 20 35 4.0200 5.3834 -0.0033 21 6 1.8712 3.5138 -0.0004 22 7 1.3171 2.3146 0.0001 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 4.0199 0.3684 -0.0005 27 1 5.8549 3.5027 -0.0142 28 1 6.0511 0.8279 0.8712 29 1 6.0426 0.8305 -0.9088 30 1 7.5563 3.6166 -1.1910 31 1 9.1208 2.7859 -1.3666 32 1 7.6686 2.1249 -2.1556 33 1 7.8408 2.0496 2.1141 34 1 9.1082 2.9225 1.2200 35 1 7.4386 3.5401 1.2283 36 1 11.6822 -0.2933 -0.2720 37 1 1.2417 4.3913 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596266147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:56 Heat of formation + Delta-G solvation = -5.424962 kcal Electronic energy + Delta-G solvation = -20229.061996 eV Core-core repulsion = 17052.872829 eV Total energy + Delta-G solvation = -3176.189167 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67896 -39.64505 -38.58376 -36.10188 -33.89214 -33.07070 -31.49053 -30.05261 -28.07989 -27.96764 -27.58192 -26.77360 -24.10230 -23.18370 -20.90447 -19.71964 -18.42466 -18.09096 -17.33565 -17.00596 -16.80473 -16.31374 -15.92802 -15.76583 -14.99541 -14.95571 -14.86102 -14.62852 -14.43954 -13.99232 -13.80439 -13.37991 -13.12858 -12.62142 -12.60955 -12.37848 -12.14564 -12.05429 -11.88939 -11.66767 -11.47751 -11.42387 -11.07791 -10.66087 -10.61851 -10.43639 -9.50939 -8.90852 -8.31294 -6.32026 0.02388 0.40103 0.65041 1.34527 1.36713 1.47943 1.98031 2.32907 2.42959 2.67910 3.05162 3.34206 3.76822 3.96119 4.07759 4.29201 4.33343 4.43567 4.46622 4.49519 4.59098 4.68023 4.74513 4.77826 4.79397 4.85329 4.88959 5.02009 5.15249 5.17782 5.43691 5.64415 5.72943 5.98374 6.21920 6.27176 6.54333 6.73542 6.81808 7.33159 8.85224 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.004610 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.350547 B = 6072.346662 C = 7804.532162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.319 6.319 3 C 0.361 3.639 4 C -0.285 4.285 5 C 0.305 3.695 6 N -0.709 5.709 7 C 0.151 3.849 8 C 0.027 3.973 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.512 4.512 12 H 0.038 0.962 13 C 0.023 3.977 14 N -0.942 5.942 15 Si 0.936 3.064 16 H -0.283 1.283 17 H -0.315 1.315 18 H -0.212 1.212 19 C -0.267 4.267 20 Br -0.031 7.031 21 C 0.215 3.785 22 N -0.581 5.581 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.120 0.880 26 H 0.139 0.861 27 H 0.409 0.591 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.034 0.966 35 H 0.062 0.938 36 H 0.264 0.736 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.737 12.102 0.822 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.184 3.816 4 C -0.312 4.312 5 C 0.186 3.814 6 N -0.336 5.336 7 C 0.028 3.972 8 C 0.026 3.974 9 C -0.199 4.199 10 C -0.205 4.205 11 C -0.550 4.550 12 H 0.057 0.943 13 C -0.175 4.175 14 N -0.581 5.581 15 Si 0.766 3.234 16 H -0.210 1.210 17 H -0.245 1.245 18 H -0.136 1.136 19 C -0.354 4.354 20 Br 0.052 6.948 21 C 0.057 3.943 22 N -0.309 5.309 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.138 0.862 26 H 0.157 0.843 27 H 0.249 0.751 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -19.942 12.082 0.795 23.330 hybrid contribution 1.702 0.013 0.223 1.717 sum -18.240 12.095 1.018 21.909 Atomic orbital electron populations 1.23111 0.75377 1.04669 1.02666 1.86250 1.24827 1.24388 1.87125 1.19587 0.88638 0.85095 0.88269 1.20377 0.92745 0.97497 1.20599 1.17533 0.84698 0.91982 0.87191 1.45220 1.01450 1.10312 1.76575 1.21341 0.89624 0.85631 1.00631 1.18644 0.91615 0.94138 0.92998 1.22221 1.00883 0.98410 0.98338 1.22300 0.99518 0.99472 0.99180 1.20962 0.91030 0.92231 1.50761 0.94328 1.25731 0.97981 0.99640 0.94187 1.70082 1.05627 1.33077 1.49325 0.86456 0.75975 0.82810 0.78125 1.21008 1.24489 1.13626 1.22205 0.96361 0.90813 1.26048 1.96626 1.82955 1.16897 1.98320 1.22532 0.89906 0.94656 0.87181 1.67555 1.39471 0.98174 1.25693 0.92023 0.92038 0.86160 0.84291 0.75141 0.92352 0.92530 0.92786 0.93681 0.93590 0.92971 0.94796 0.91946 0.92686 0.79040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.32 -8.31 10.47 -90.23 -0.95 -9.25 16 3 C 0.36 10.11 7.48 84.70 0.63 10.75 16 4 C -0.28 -8.50 9.31 22.59 0.21 -8.29 16 5 C 0.30 8.79 6.69 38.55 0.26 9.04 16 6 N -0.71 -21.42 5.12 -338.86 -1.74 -23.15 16 7 C 0.15 5.41 3.76 86.38 0.32 5.74 16 8 C 0.03 1.11 0.50 -52.93 -0.03 1.09 16 9 C -0.14 -5.39 7.53 71.98 0.54 -4.85 16 10 C -0.15 -5.58 7.52 71.98 0.54 -5.04 16 11 C -0.51 -26.95 8.62 25.60 0.22 -26.73 16 12 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 13 C 0.02 1.25 5.32 84.66 0.45 1.70 16 14 N -0.94 -57.06 13.96 21.45 0.30 -56.76 16 15 Si 0.94 42.55 22.79 68.60 1.56 44.11 16 16 H -0.28 -12.65 7.10 99.48 0.71 -11.94 16 17 H -0.32 -14.82 7.11 99.48 0.71 -14.12 16 18 H -0.21 -8.37 4.65 99.48 0.46 -7.90 16 19 C -0.27 -6.59 6.26 22.52 0.14 -6.45 16 20 Br -0.03 -0.67 32.28 -20.37 -0.66 -1.33 16 21 C 0.21 4.79 10.92 84.55 0.92 5.71 16 22 N -0.58 -14.70 9.21 -309.12 -2.85 -17.55 16 23 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 24 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 25 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.14 4.31 6.89 -2.91 -0.02 4.29 16 27 H 0.41 11.72 4.80 -92.71 -0.45 11.27 16 28 H 0.06 2.14 7.98 -2.38 -0.02 2.12 16 29 H 0.06 2.11 8.00 -2.39 -0.02 2.09 16 30 H 0.05 1.72 7.13 -2.39 -0.02 1.70 16 31 H 0.04 1.83 4.30 -2.39 -0.01 1.82 16 32 H 0.04 1.75 8.12 -2.39 -0.02 1.73 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 1.35 2.25 -2.39 -0.01 1.34 16 35 H 0.06 1.95 6.86 -2.39 -0.02 1.93 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.19 2.98 8.06 -2.92 -0.02 2.96 16 Total: -1.00 -61.59 310.18 1.48 -60.11 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.41 Total: 19.34 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.40 Total: -15.52 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -4.28 Total: -97.46 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.95 Total: -9.25 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.56 Total: 44.11 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -0.66 Total: -1.33 kcal Total: -61.59 1.48 -60.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.688 kcal (2) G-P(sol) polarization free energy of solvation -61.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds