Wall clock time and date at job start Tue Mar 31 2020 15:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99471 * 2 1 4 4 C 1.53007 * 109.46514 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47610 * 63.23742 * 4 3 2 6 6 C 1.36927 * 120.00258 * 93.78589 * 5 4 3 7 7 H 1.07994 * 120.00534 * 219.40672 * 6 5 4 8 8 C 1.38817 * 119.99775 * 39.40661 * 6 5 4 9 9 N 1.31617 * 120.00271 * 213.45027 * 8 6 5 10 10 Si 1.86801 * 119.99984 * 33.45510 * 8 6 5 11 11 H 1.48498 * 109.47434 * 88.01011 * 10 8 6 12 12 H 1.48500 * 109.47111 * 208.01355 * 10 8 6 13 13 H 1.48501 * 109.46769 * 328.00596 * 10 8 6 14 14 C 1.46501 * 119.99551 * 273.79437 * 5 4 3 15 15 C 1.50706 * 109.46759 * 264.13242 * 14 5 4 16 16 C 1.38238 * 120.41169 * 264.57199 * 15 14 5 17 17 N 1.31852 * 120.78407 * 180.02562 * 16 15 14 18 18 C 1.31879 * 121.73667 * 0.02562 * 17 16 15 19 19 C 1.38277 * 120.74948 * 359.97438 * 18 17 16 20 20 Br 1.89099 * 120.42787 * 180.27702 * 19 18 17 21 21 C 1.38603 * 120.41647 * 84.60119 * 15 14 5 22 22 C 1.50706 * 120.79083 * 359.95283 * 21 15 14 23 23 H 1.09002 * 109.47456 * 300.00533 * 1 2 3 24 24 H 1.09004 * 109.47099 * 60.00543 * 1 2 3 25 25 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47323 * 60.00047 * 3 2 1 27 27 H 1.09000 * 109.47068 * 299.99086 * 3 2 1 28 28 H 1.09003 * 109.47043 * 303.23352 * 4 3 2 29 29 H 1.09008 * 109.46804 * 183.23730 * 4 3 2 30 30 H 0.96998 * 120.00388 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47027 * 144.13351 * 14 5 4 32 32 H 1.08996 * 109.47729 * 24.13319 * 14 5 4 33 33 H 1.08000 * 119.60675 * 0.02562 * 16 15 14 34 34 H 1.07994 * 119.62595 * 179.97438 * 18 17 16 35 35 H 1.08996 * 109.47120 * 263.33643 * 22 21 15 36 36 H 1.08998 * 109.47321 * 23.33724 * 22 21 15 37 37 H 1.09002 * 109.47067 * 143.33702 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9727 0.5264 -1.2341 6 6 4.3349 1.2778 -2.3200 7 1 4.0553 0.9607 -3.3137 8 6 5.0614 2.4475 -2.1435 9 7 4.8735 3.4676 -2.9537 10 14 6.3057 2.5737 -0.7560 11 1 7.6221 2.0706 -1.2243 12 1 6.4384 3.9923 -0.3375 13 1 5.8458 1.7585 0.3970 14 6 4.0224 -0.9360 -1.3059 15 6 5.4225 -1.4063 -1.0061 16 6 6.3087 -1.6659 -2.0348 17 7 7.5352 -2.0782 -1.7810 18 6 7.9648 -2.2593 -0.5473 19 6 7.1350 -2.0199 0.5326 20 35 7.7629 -2.2751 2.2979 21 6 5.8374 -1.5846 0.3043 22 6 4.9016 -1.3120 1.4537 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.8535 0.5944 0.8587 29 1 3.9787 2.1789 0.0574 30 1 5.3809 4.2850 -2.8301 31 1 3.7364 -1.2606 -2.3064 32 1 3.3328 -1.3593 -0.5756 33 1 5.9928 -1.5294 -3.0585 34 1 8.9761 -2.5984 -0.3786 35 1 5.0813 -0.3082 1.8384 36 1 3.8705 -1.3898 1.1090 37 1 5.0761 -2.0410 2.2450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597144951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:01 Heat of formation + Delta-G solvation = -0.533487 kcal Electronic energy + Delta-G solvation = -21091.487925 eV Core-core repulsion = 17915.510868 eV Total energy + Delta-G solvation = -3175.977057 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39657 -39.00019 -37.36822 -35.24878 -34.13205 -33.19422 -31.31897 -30.20488 -28.80807 -27.75614 -27.00940 -24.80656 -23.55946 -23.18043 -21.64958 -18.82108 -17.90297 -17.54106 -17.30072 -17.00897 -16.63587 -16.12049 -15.94072 -15.55566 -15.04862 -14.71052 -14.65742 -14.29087 -13.92177 -13.80314 -13.74674 -13.47203 -13.15452 -12.85183 -12.58450 -12.41532 -12.21982 -12.14925 -11.93608 -11.73954 -11.57466 -11.31728 -10.65620 -10.49115 -10.37944 -10.25223 -9.79820 -8.73369 -8.29934 -5.53062 -0.07436 0.20507 0.49266 1.25872 1.39417 1.42833 2.37611 2.64435 2.94729 3.08219 3.48719 3.56523 3.69300 3.78510 3.96925 4.17877 4.41458 4.42732 4.51956 4.55696 4.63192 4.65117 4.70118 4.71814 4.76191 4.89780 4.94948 4.98422 5.02272 5.20919 5.25368 5.40416 5.63707 5.91055 6.21676 6.42619 6.88670 6.99318 7.62891 8.09746 8.90267 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.005851 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.211896 B = 4784.436228 C = 5640.497015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.054 3.946 4 C 0.135 3.865 5 N -0.589 5.589 6 C -0.253 4.253 7 H 0.047 0.953 8 C 0.009 3.991 9 N -0.922 5.922 10 Si 0.891 3.109 11 H -0.312 1.312 12 H -0.299 1.299 13 H -0.236 1.236 14 C 0.191 3.809 15 C -0.138 4.138 16 C 0.112 3.888 17 N -0.503 5.503 18 C 0.110 3.890 19 C -0.160 4.160 20 Br -0.023 7.023 21 C -0.017 4.017 22 C -0.123 4.123 23 H 0.049 0.951 24 H 0.031 0.969 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.262 0.738 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.159 0.841 34 H 0.178 0.822 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 -12.351 13.386 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.025 4.025 4 C 0.010 3.990 5 N -0.309 5.309 6 C -0.382 4.382 7 H 0.065 0.935 8 C -0.191 4.191 9 N -0.564 5.564 10 Si 0.719 3.281 11 H -0.241 1.241 12 H -0.226 1.226 13 H -0.159 1.159 14 C 0.065 3.935 15 C -0.144 4.144 16 C -0.044 4.044 17 N -0.213 5.213 18 C -0.050 4.050 19 C -0.242 4.242 20 Br 0.061 6.939 21 C -0.027 4.027 22 C -0.179 4.179 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.176 0.824 34 H 0.195 0.805 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.207 -12.593 13.290 18.310 hybrid contribution 0.242 1.252 0.193 1.290 sum 0.035 -11.341 13.483 17.619 Atomic orbital electron populations 1.22840 0.80669 1.03360 0.99941 1.87809 1.20406 1.27970 1.95385 1.23097 0.95752 0.84570 0.99089 1.21571 0.91209 0.97023 0.89173 1.44086 1.74602 1.00679 1.11527 1.18534 1.28520 1.03405 0.87790 0.93546 1.25877 0.99045 0.96082 0.98048 1.70111 1.40679 1.03107 1.42482 0.86661 0.81723 0.76410 0.83298 1.24065 1.22631 1.15949 1.20016 0.88885 0.83430 1.01164 1.22002 1.01941 0.97892 0.92553 1.22920 0.88386 0.92608 1.00492 1.67769 1.16696 1.13947 1.22848 1.23035 1.00082 0.95461 0.86383 1.22978 0.97422 1.10434 0.93340 1.96612 1.87635 1.95978 1.13651 1.20345 0.93241 0.93059 0.96052 1.21176 0.98943 1.02751 0.95022 0.93245 0.95047 0.88331 0.92279 0.95349 0.90688 0.93456 0.92853 0.92532 0.89085 0.82422 0.80457 0.90455 0.88953 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.40 -12.17 9.21 -148.98 -1.37 -13.54 16 3 C 0.05 1.81 6.29 71.98 0.45 2.27 16 4 C 0.14 5.19 4.40 86.38 0.38 5.57 16 5 N -0.59 -25.10 1.98 -706.32 -1.40 -26.50 16 6 C -0.25 -13.26 9.75 84.04 0.82 -12.44 16 7 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 8 C 0.01 0.48 5.00 84.86 0.42 0.90 16 9 N -0.92 -55.12 13.97 21.65 0.30 -54.82 16 10 Si 0.89 44.17 26.53 68.60 1.82 45.99 16 11 H -0.31 -16.59 7.11 99.48 0.71 -15.88 16 12 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 13 H -0.24 -10.55 5.80 99.48 0.58 -9.97 16 14 C 0.19 6.88 5.08 85.63 0.43 7.31 16 15 C -0.14 -4.92 5.44 -19.78 -0.11 -5.02 16 16 C 0.11 4.18 10.84 84.69 0.92 5.09 16 17 N -0.50 -18.33 10.36 -195.77 -2.03 -20.36 16 18 C 0.11 3.48 10.95 84.70 0.93 4.40 16 19 C -0.16 -4.88 6.24 22.40 0.14 -4.74 16 20 Br -0.02 -0.56 32.13 -20.37 -0.65 -1.21 16 21 C -0.02 -0.54 5.92 -19.65 -0.12 -0.65 16 22 C -0.12 -3.28 7.71 71.24 0.55 -2.73 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 2.54 4.19 -2.39 -0.01 2.53 16 29 H 0.05 2.02 4.75 -2.38 -0.01 2.01 16 30 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.06 2.07 8.00 -2.39 -0.02 2.05 16 32 H 0.09 2.93 5.01 -2.39 -0.01 2.92 16 33 H 0.16 5.72 8.06 -2.91 -0.02 5.70 16 34 H 0.18 4.55 8.06 -2.91 -0.02 4.53 16 35 H 0.08 2.17 6.94 -2.39 -0.02 2.15 16 36 H 0.09 2.40 5.40 -2.39 -0.01 2.38 16 37 H 0.09 2.06 7.11 -2.39 -0.02 2.04 16 Total: -1.00 -62.90 317.39 3.69 -59.20 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.95 Total: 9.39 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.07 Total: 1.85 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -3.12 Total: -101.68 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.37 Total: -13.54 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.82 Total: 45.99 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.65 Total: -1.21 kcal Total: -62.90 3.69 -59.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.670 kcal (2) G-P(sol) polarization free energy of solvation -62.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds