Wall clock time and date at job start Tue Mar 31 2020 14:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99611 * 2 1 4 4 H 1.48497 * 109.46888 * 269.99355 * 3 2 1 5 5 H 1.48500 * 109.47312 * 29.99622 * 3 2 1 6 6 H 1.48504 * 109.46846 * 149.99805 * 3 2 1 7 7 C 1.37876 * 120.00616 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99668 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00596 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.51931 * 59.92023 * 9 7 2 11 11 C 1.53031 * 109.49905 * 180.02562 * 9 7 2 12 12 C 1.53046 * 109.53726 * 181.31974 * 11 9 7 13 13 C 1.53195 * 109.30793 * 298.63346 * 12 11 9 14 14 N 1.46923 * 108.77776 * 54.63922 * 13 12 11 15 15 C 1.34770 * 120.63141 * 126.40957 * 14 13 12 16 16 O 1.21536 * 119.99675 * 179.97438 * 15 14 13 17 17 C 1.47996 * 120.00558 * 359.97438 * 15 14 13 18 18 C 1.39979 * 120.94153 * 89.71497 * 17 15 14 19 19 Cl 1.73594 * 120.51015 * 0.02562 * 18 17 15 20 20 C 1.38292 * 118.97607 * 179.71088 * 18 17 15 21 21 N 1.31790 * 120.91459 * 0.58560 * 20 18 17 22 22 C 1.31790 * 122.09758 * 359.71191 * 21 20 18 23 23 C 1.38294 * 120.91522 * 359.97438 * 22 21 20 24 24 Cl 1.73600 * 120.51313 * 180.02562 * 23 22 21 25 25 C 1.46927 * 118.73554 * 306.38601 * 14 13 12 26 26 H 0.96994 * 120.00469 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.46212 * 61.29773 * 11 9 7 28 28 H 1.09006 * 109.45283 * 301.33098 * 11 9 7 29 29 H 1.08990 * 109.49711 * 58.58414 * 12 11 9 30 30 H 1.08999 * 109.49785 * 178.68661 * 12 11 9 31 31 H 1.09009 * 109.58115 * 174.42370 * 13 12 11 32 32 H 1.08995 * 109.58619 * 294.84531 * 13 12 11 33 33 H 1.08001 * 119.54381 * 180.31375 * 20 18 17 34 34 H 1.07997 * 119.54238 * 179.97438 * 22 21 20 35 35 H 1.08993 * 109.58956 * 293.82344 * 25 14 13 36 36 H 1.08999 * 109.70338 * 173.46710 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8754 -0.6788 0.8901 11 6 4.0224 -2.6365 0.0010 12 6 5.5525 -2.6377 0.0348 13 6 6.0873 -1.9352 -1.2171 14 7 5.4867 -0.5970 -1.3016 15 6 6.2632 0.4977 -1.4235 16 8 5.7541 1.5991 -1.4929 17 6 7.7358 0.3588 -1.4729 18 6 8.4020 0.1873 -2.6919 19 17 7.5133 0.1336 -4.1821 20 6 9.7798 0.0677 -2.6914 21 7 10.4620 0.1020 -1.5643 22 6 9.8745 0.2557 -0.3946 23 6 8.5013 0.3894 -0.3013 24 17 7.7384 0.5921 1.2449 25 6 4.0234 -0.4751 -1.2512 26 1 -0.4850 0.8400 -0.0004 27 1 3.6787 -3.1434 -0.9007 28 1 3.6394 -3.1573 0.8787 29 1 5.8971 -2.1093 0.9236 30 1 5.9151 -3.6653 0.0582 31 1 7.1717 -1.8455 -1.1506 32 1 5.8200 -2.5123 -2.1023 33 1 10.3036 -0.0599 -3.6272 34 1 10.4739 0.2776 0.5035 35 1 3.5877 -0.9331 -2.1391 36 1 3.7436 0.5775 -1.2083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:16 Heat of formation + Delta-G solvation = -6.184805 kcal Electronic energy + Delta-G solvation = -24135.235751 eV Core-core repulsion = 20478.317391 eV Total energy + Delta-G solvation = -3656.918360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07481 -39.49174 -37.17518 -37.13793 -36.85156 -33.75924 -32.76024 -31.95670 -31.44195 -30.57882 -26.19154 -25.29012 -24.05734 -23.93087 -22.13503 -20.47250 -19.08874 -17.83573 -17.56501 -17.03372 -16.76916 -16.40369 -15.32744 -14.97064 -14.95330 -14.58436 -14.25093 -14.05333 -13.70773 -13.12931 -13.04191 -12.83135 -12.73629 -12.44834 -12.27054 -12.17042 -11.88371 -11.45978 -11.30502 -11.14598 -10.68751 -10.54145 -10.46226 -10.17176 -10.04506 -9.82284 -9.69188 -9.33998 -9.30165 -9.16430 -8.65766 -8.24073 -6.14736 -4.16572 0.25783 0.28895 1.38226 1.75367 2.50800 2.91758 3.08161 3.33958 3.42855 3.52994 3.85630 4.08392 4.18041 4.36210 4.38068 4.62061 4.95360 5.00669 5.17265 5.19902 5.27340 5.41529 5.69334 5.72523 5.91132 6.01406 6.07130 6.32050 6.42833 6.54201 6.65361 6.70638 7.07221 7.16191 7.36335 7.58248 7.65710 8.18119 8.44099 8.88543 9.46656 10.97159 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.005150 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.193797 B = 5436.064504 C = 5724.460974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.006 3.994 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.135 4.135 13 C 0.110 3.890 14 N -0.586 5.586 15 C 0.553 3.447 16 O -0.516 6.516 17 C -0.050 4.050 18 C -0.059 4.059 19 Cl -0.024 7.024 20 C 0.119 3.881 21 N -0.448 5.448 22 C 0.120 3.880 23 C -0.059 4.059 24 Cl -0.019 7.019 25 C 0.103 3.897 26 H 0.266 0.734 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.072 0.928 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.537 -3.286 -3.677 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.187 1.187 7 C -0.554 4.554 8 H 0.097 0.903 9 C -0.014 4.014 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.174 4.174 13 C -0.013 4.013 14 N -0.318 5.318 15 C 0.337 3.663 16 O -0.392 6.392 17 C -0.063 4.063 18 C -0.089 4.089 19 Cl 0.005 6.995 20 C -0.039 4.039 21 N -0.156 5.156 22 C -0.038 4.038 23 C -0.089 4.089 24 Cl 0.011 6.989 25 C -0.017 4.017 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.195 0.805 34 H 0.196 0.804 35 H 0.091 0.909 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 21.802 -2.668 -3.740 22.281 hybrid contribution -0.640 1.096 -0.032 1.270 sum 21.163 -1.572 -3.772 21.553 Atomic orbital electron populations 1.69875 1.06250 1.27195 1.49798 1.25023 0.94724 0.98988 0.94041 0.87076 0.79887 0.83671 0.79093 1.19843 1.22131 1.18666 1.20934 0.88052 0.94656 1.51778 0.90331 1.19489 0.96905 0.92207 0.92750 0.95005 1.21442 0.91750 0.98807 1.01755 1.21986 0.98742 0.99582 0.97052 1.21728 0.96637 0.83354 0.99615 1.48358 1.08518 1.05341 1.69575 1.17818 0.84575 0.85507 0.78401 1.90846 1.73353 1.25207 1.49788 1.20459 0.96442 0.97817 0.91564 1.22160 0.93809 1.04586 0.88322 1.98438 1.74904 1.96308 1.29822 1.22910 0.88375 0.94702 0.97891 1.67847 1.38642 1.11408 0.97723 1.22923 0.89542 0.94383 0.96969 1.22205 0.94139 1.04209 0.88336 1.98460 1.81079 1.95060 1.24349 1.22764 0.74432 1.02838 1.01643 0.92444 0.92344 0.91978 0.91777 0.91385 0.91693 0.90832 0.80460 0.80425 0.90945 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.96 55.43 0.77 -26.31 16 2 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 3 Si 0.87 22.97 24.32 -169.99 -4.13 18.84 16 4 H -0.27 -7.23 6.92 56.52 0.39 -6.84 16 5 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.26 -6.87 6.53 56.52 0.37 -6.50 16 7 C -0.52 -14.00 9.14 -34.44 -0.31 -14.31 16 8 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 9 C 0.01 0.14 1.84 -91.65 -0.17 -0.03 16 10 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 11 C -0.10 -1.80 5.11 -26.69 -0.14 -1.94 16 12 C -0.14 -1.94 6.08 -26.61 -0.16 -2.10 16 13 C 0.11 1.55 6.34 -3.71 -0.02 1.53 16 14 N -0.59 -10.71 2.97 -173.83 -0.52 -11.23 16 15 C 0.55 10.32 5.52 -12.26 -0.07 10.26 16 16 O -0.52 -11.77 16.52 5.33 0.09 -11.68 16 17 C -0.05 -0.73 3.67 -104.59 -0.38 -1.11 16 18 C -0.06 -0.71 6.38 -38.91 -0.25 -0.96 16 19 Cl -0.02 -0.29 28.17 -51.86 -1.46 -1.75 16 20 C 0.12 1.14 10.98 -17.55 -0.19 0.95 16 21 N -0.45 -4.52 10.33 -13.24 -0.14 -4.66 16 22 C 0.12 1.18 10.98 -17.55 -0.19 0.99 16 23 C -0.06 -0.75 6.24 -38.91 -0.24 -0.99 16 24 Cl -0.02 -0.26 28.17 -51.86 -1.46 -1.72 16 25 C 0.10 2.25 5.11 -3.71 -0.02 2.23 16 26 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.80 6.23 -51.92 -0.32 0.48 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.18 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.08 2.00 2.34 -51.93 -0.12 1.88 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -32.46 324.86 -8.00 -40.46 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -3.80 Total: -3.42 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.25 Total: -3.43 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.12 Total: -42.20 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.13 Total: 18.84 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -2.92 Total: -3.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.46 -8.00 -40.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.274 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds