Wall clock time and date at job start Tue Mar 31 2020 14:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99611 * 2 1 4 4 H 1.48497 * 109.46888 * 269.99355 * 3 2 1 5 5 H 1.48500 * 109.47312 * 29.99622 * 3 2 1 6 6 H 1.48504 * 109.46846 * 149.99805 * 3 2 1 7 7 C 1.37876 * 120.00616 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99668 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00596 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.51931 * 59.92023 * 9 7 2 11 11 C 1.53031 * 109.49905 * 180.02562 * 9 7 2 12 12 C 1.53046 * 109.53726 * 181.31974 * 11 9 7 13 13 C 1.53195 * 109.30793 * 298.63346 * 12 11 9 14 14 N 1.46923 * 108.77776 * 54.63922 * 13 12 11 15 15 C 1.34770 * 120.63141 * 126.40957 * 14 13 12 16 16 O 1.21536 * 119.99675 * 179.97438 * 15 14 13 17 17 C 1.47996 * 120.00558 * 359.97438 * 15 14 13 18 18 C 1.39979 * 120.94153 * 89.71497 * 17 15 14 19 19 Cl 1.73594 * 120.51015 * 0.02562 * 18 17 15 20 20 C 1.38292 * 118.97607 * 179.71088 * 18 17 15 21 21 N 1.31790 * 120.91459 * 0.58560 * 20 18 17 22 22 C 1.31790 * 122.09758 * 359.71191 * 21 20 18 23 23 C 1.38294 * 120.91522 * 359.97438 * 22 21 20 24 24 Cl 1.73600 * 120.51313 * 180.02562 * 23 22 21 25 25 C 1.46927 * 118.73554 * 306.38601 * 14 13 12 26 26 H 0.96994 * 120.00469 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.46212 * 61.29773 * 11 9 7 28 28 H 1.09006 * 109.45283 * 301.33098 * 11 9 7 29 29 H 1.08990 * 109.49711 * 58.58414 * 12 11 9 30 30 H 1.08999 * 109.49785 * 178.68661 * 12 11 9 31 31 H 1.09009 * 109.58115 * 174.42370 * 13 12 11 32 32 H 1.08995 * 109.58619 * 294.84531 * 13 12 11 33 33 H 1.08001 * 119.54381 * 180.31375 * 20 18 17 34 34 H 1.07997 * 119.54238 * 179.97438 * 22 21 20 35 35 H 1.08993 * 109.58956 * 293.82344 * 25 14 13 36 36 H 1.08999 * 109.70338 * 173.46710 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8754 -0.6788 0.8901 11 6 4.0224 -2.6365 0.0010 12 6 5.5525 -2.6377 0.0348 13 6 6.0873 -1.9352 -1.2171 14 7 5.4867 -0.5970 -1.3016 15 6 6.2632 0.4977 -1.4235 16 8 5.7541 1.5991 -1.4929 17 6 7.7358 0.3588 -1.4729 18 6 8.4020 0.1873 -2.6919 19 17 7.5133 0.1336 -4.1821 20 6 9.7798 0.0677 -2.6914 21 7 10.4620 0.1020 -1.5643 22 6 9.8745 0.2557 -0.3946 23 6 8.5013 0.3894 -0.3013 24 17 7.7384 0.5921 1.2449 25 6 4.0234 -0.4751 -1.2512 26 1 -0.4850 0.8400 -0.0004 27 1 3.6787 -3.1434 -0.9007 28 1 3.6394 -3.1573 0.8787 29 1 5.8971 -2.1093 0.9236 30 1 5.9151 -3.6653 0.0582 31 1 7.1717 -1.8455 -1.1506 32 1 5.8200 -2.5123 -2.1023 33 1 10.3036 -0.0599 -3.6272 34 1 10.4739 0.2776 0.5035 35 1 3.5877 -0.9331 -2.1391 36 1 3.7436 0.5775 -1.2083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597901322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:15 Heat of formation + Delta-G solvation = -27.631993 kcal Electronic energy + Delta-G solvation = -24136.165771 eV Core-core repulsion = 20478.317391 eV Total energy + Delta-G solvation = -3657.848380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14345 -40.75151 -38.65314 -38.10540 -37.82424 -35.48077 -34.18932 -33.38381 -32.28595 -32.25567 -27.59701 -26.99065 -25.20834 -24.91456 -23.65391 -21.89211 -20.53089 -19.17859 -18.82601 -18.49425 -18.09104 -17.65515 -16.53895 -16.42578 -15.94707 -15.83188 -15.72830 -15.50095 -15.17683 -14.89190 -14.58731 -14.17064 -13.82571 -13.68670 -13.61324 -13.28185 -13.10381 -12.97861 -12.83890 -12.38660 -12.27323 -12.18465 -11.92108 -11.75070 -11.60840 -11.21499 -11.11090 -11.01088 -10.83398 -10.77040 -10.19045 -9.77732 -8.41442 -6.42774 -0.68448 -0.56616 0.45465 0.82377 1.13308 1.19381 1.26171 1.37106 1.69428 2.14588 2.17806 2.91264 2.96445 3.13150 3.29656 3.41030 3.78814 3.81255 3.96490 4.04925 4.14506 4.35769 4.42366 4.48415 4.53824 4.62767 4.77378 4.91543 4.97577 5.03579 5.16501 5.27548 5.49068 5.58782 5.64264 6.16882 6.23929 6.35066 6.65934 6.78352 7.22842 8.74572 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.005150 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.193797 B = 5436.064504 C = 5724.460974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.034 3.966 3 Si 0.926 3.074 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.007 3.993 10 H 0.015 0.985 11 C -0.096 4.096 12 C -0.126 4.126 13 C 0.105 3.895 14 N -0.588 5.588 15 C 0.553 3.447 16 O -0.569 6.569 17 C -0.069 4.069 18 C -0.064 4.064 19 Cl -0.030 7.030 20 C 0.140 3.860 21 N -0.445 5.445 22 C 0.140 3.860 23 C -0.067 4.067 24 Cl -0.035 7.035 25 C 0.110 3.890 26 H 0.267 0.733 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.214 0.786 34 H 0.212 0.788 35 H 0.072 0.928 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.485 -4.610 -4.150 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.165 4.165 3 Si 0.756 3.244 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.546 4.546 8 H 0.073 0.927 9 C -0.013 4.013 10 H 0.033 0.967 11 C -0.134 4.134 12 C -0.163 4.163 13 C -0.016 4.016 14 N -0.318 5.318 15 C 0.339 3.661 16 O -0.448 6.448 17 C -0.081 4.081 18 C -0.094 4.094 19 Cl -0.001 7.001 20 C -0.018 4.018 21 N -0.153 5.153 22 C -0.018 4.018 23 C -0.097 4.097 24 Cl -0.006 7.006 25 C -0.012 4.012 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.230 0.770 34 H 0.228 0.772 35 H 0.091 0.909 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 25.791 -4.030 -4.208 26.441 hybrid contribution -1.792 1.434 0.087 2.297 sum 23.999 -2.597 -4.121 24.488 Atomic orbital electron populations 1.69964 1.07422 1.27808 1.52334 1.25547 0.95078 1.01316 0.94604 0.86238 0.78557 0.81269 0.78314 1.20806 1.22122 1.19080 1.21289 0.90697 0.93246 1.49412 0.92736 1.19408 0.93949 0.95520 0.92416 0.96679 1.21370 0.94798 0.95230 1.01997 1.21935 0.95421 1.02084 0.96906 1.22053 0.97957 0.81241 1.00396 1.48334 1.06993 1.07250 1.69230 1.18349 0.86358 0.84516 0.76841 1.90808 1.74898 1.27147 1.51962 1.20175 0.93786 1.00674 0.93476 1.22273 0.94607 1.05310 0.87204 1.98441 1.75299 1.96374 1.30006 1.23457 0.87171 0.92028 0.99100 1.68026 1.38213 1.11263 0.97837 1.23414 0.88377 0.91872 0.98102 1.22315 0.94936 1.05460 0.87026 1.98457 1.81576 1.95271 1.25319 1.22250 0.77367 1.00580 1.00965 0.92358 0.91806 0.92151 0.92246 0.87187 0.89111 0.88919 0.76966 0.77196 0.90933 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 2 C 0.03 1.98 5.45 84.66 0.46 2.44 16 3 Si 0.93 49.65 24.32 68.60 1.67 51.32 16 4 H -0.28 -15.31 6.92 99.48 0.69 -14.62 16 5 H -0.29 -15.49 7.11 99.48 0.71 -14.78 16 6 H -0.27 -14.20 6.53 99.48 0.65 -13.55 16 7 C -0.51 -28.23 9.14 25.60 0.23 -28.00 16 8 H 0.05 3.24 7.99 -2.91 -0.02 3.22 16 9 C 0.01 0.30 1.84 -11.46 -0.02 0.28 16 10 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 11 C -0.10 -3.33 5.11 30.62 0.16 -3.17 16 12 C -0.13 -3.19 6.08 30.67 0.19 -3.00 16 13 C 0.10 2.65 6.34 86.36 0.55 3.19 16 14 N -0.59 -20.84 2.97 -822.15 -2.44 -23.29 16 15 C 0.55 20.26 5.52 86.83 0.48 20.74 16 16 O -0.57 -26.35 16.52 -3.83 -0.06 -26.42 16 17 C -0.07 -1.86 3.67 -19.85 -0.07 -1.93 16 18 C -0.06 -1.37 6.38 22.70 0.14 -1.22 16 19 Cl -0.03 -0.69 28.17 -2.72 -0.08 -0.76 16 20 C 0.14 2.08 10.98 84.71 0.93 3.01 16 21 N -0.45 -6.93 10.33 -195.81 -2.02 -8.95 16 22 C 0.14 2.19 10.98 84.71 0.93 3.12 16 23 C -0.07 -1.53 6.24 22.71 0.14 -1.39 16 24 Cl -0.04 -0.91 28.17 -2.72 -0.08 -0.99 16 25 C 0.11 4.84 5.11 86.36 0.44 5.28 16 26 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.09 8.14 -2.38 -0.02 2.08 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.89 6.23 -2.38 -0.01 1.87 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.21 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.05 2.52 2.34 -2.39 -0.01 2.51 16 Total: -1.00 -74.06 324.86 2.89 -71.17 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: 1.05 Total: -3.30 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.56 Total: -0.64 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -4.17 Total: -90.37 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.06 Total: -26.42 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.67 Total: 51.32 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.15 Total: -1.75 kcal Total: -74.06 2.89 -71.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.537 kcal (2) G-P(sol) polarization free energy of solvation -74.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds