Wall clock time and date at job start Tue Mar 31 2020 15:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35695 * 116.99408 * 2 1 4 4 C 1.38919 * 119.66914 * 180.27223 * 3 2 1 5 5 C 1.38382 * 119.11866 * 180.20580 * 4 3 2 6 6 C 1.50696 * 120.75778 * 179.80194 * 5 4 3 7 7 N 1.46897 * 109.47425 * 262.12821 * 6 5 4 8 8 C 1.46901 * 110.99879 * 64.12996 * 7 6 5 9 9 C 1.46899 * 111.00211 * 188.08621 * 7 6 5 10 10 H 1.08995 * 109.47024 * 54.99976 * 9 7 6 11 11 C 1.52999 * 109.46911 * 294.99838 * 9 7 6 12 12 C 1.50702 * 109.47030 * 174.99726 * 9 7 6 13 13 H 1.07999 * 119.99775 * 114.61415 * 12 9 7 14 14 C 1.37874 * 120.00151 * 294.61814 * 12 9 7 15 15 N 1.31514 * 119.99894 * 170.63570 * 14 12 9 16 16 Si 1.86797 * 120.00218 * 350.63659 * 14 12 9 17 17 H 1.48504 * 109.46998 * 86.69394 * 16 14 12 18 18 H 1.48493 * 109.47105 * 206.69330 * 16 14 12 19 19 H 1.48502 * 109.46811 * 326.69679 * 16 14 12 20 20 C 1.38893 * 118.47548 * 359.53219 * 5 4 3 21 21 Br 1.89101 * 120.36197 * 180.27055 * 20 5 4 22 22 C 1.38127 * 119.27568 * 0.24822 * 20 5 4 23 23 N 1.31968 * 120.81827 * 359.97438 * 22 20 5 24 24 H 1.09001 * 109.47481 * 299.99832 * 1 2 3 25 25 H 1.09002 * 109.47398 * 60.00010 * 1 2 3 26 26 H 1.09006 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.43801 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.46856 * 142.12938 * 6 5 4 29 29 H 1.09007 * 109.47296 * 22.12925 * 6 5 4 30 30 H 1.09002 * 109.46973 * 177.77489 * 8 7 6 31 31 H 1.08996 * 109.47310 * 297.77927 * 8 7 6 32 32 H 1.09003 * 109.46968 * 57.77912 * 8 7 6 33 33 H 1.08999 * 109.47046 * 54.48594 * 11 9 7 34 34 H 1.08995 * 109.47533 * 294.47818 * 11 9 7 35 35 H 1.09000 * 109.46654 * 174.48173 * 11 9 7 36 36 H 0.97002 * 120.00059 * 180.02562 * 15 14 12 37 37 H 1.07993 * 119.59517 * 180.02562 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 3.4326 1.2740 -0.0057 5 6 4.0488 2.5130 -0.0013 6 6 5.5515 2.6263 -0.0028 7 7 6.0274 2.8465 1.3694 8 6 5.7257 1.6898 2.2232 9 6 7.4641 3.1524 1.3857 10 1 7.6623 4.0011 0.7311 11 6 8.2503 1.9351 0.8948 12 6 7.8895 3.4919 2.7910 13 1 8.5800 2.8489 3.3164 14 6 7.3970 4.6234 3.4060 15 7 7.6180 4.8246 4.6867 16 14 6.4161 5.8705 2.4202 17 1 4.9853 5.4732 2.4035 18 1 6.5503 7.2111 3.0446 19 1 6.9328 5.9184 1.0288 20 6 3.2506 3.6496 -0.0013 21 35 4.0365 5.3695 -0.0030 22 6 1.8764 3.5099 -0.0003 23 7 1.3184 2.3140 0.0000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0226 0.3693 -0.0098 28 1 5.8519 3.4652 -0.6305 29 1 5.9850 1.7060 -0.3944 30 1 6.1236 1.8627 3.2232 31 1 4.6460 1.5522 2.2804 32 1 6.1839 0.7961 1.7994 33 1 7.8747 1.6298 -0.0818 34 1 8.1302 1.1153 1.6029 35 1 9.3061 2.1933 0.8135 36 1 7.2712 5.6205 5.1196 37 1 1.2508 4.3902 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598593311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:26 Heat of formation + Delta-G solvation = 17.150923 kcal Electronic energy + Delta-G solvation = -20810.770402 eV Core-core repulsion = 17635.560199 eV Total energy + Delta-G solvation = -3175.210203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75253 -38.36048 -37.19032 -33.58676 -32.09068 -31.83410 -29.74736 -29.04207 -27.41217 -26.86249 -25.50169 -23.85430 -23.23437 -21.35569 -19.17838 -17.91318 -17.28064 -16.69283 -16.15192 -15.65704 -15.22752 -14.77546 -14.52822 -14.22753 -13.70205 -13.54348 -13.30595 -12.90462 -12.52486 -12.35904 -12.00349 -11.81668 -11.62658 -11.42842 -11.13797 -11.07685 -10.90948 -10.53817 -10.25021 -9.98442 -9.92185 -9.69103 -9.57569 -9.27951 -9.04796 -8.48921 -8.14469 -7.28209 -6.01120 -4.07576 0.98997 1.13984 1.83331 2.97464 3.55363 3.57705 3.63117 3.70375 4.19006 4.66279 4.68859 4.82714 4.94535 5.03298 5.13888 5.16095 5.40325 5.43457 5.56371 5.65846 5.68371 5.90378 6.11959 6.17508 6.24189 6.27104 6.32007 6.35326 6.51600 6.80014 7.00354 7.07633 7.22592 7.64428 7.68061 7.98906 8.19439 8.57923 8.99047 9.64148 11.07169 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.006345 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.480288 B = 4411.708559 C = 5429.698217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.327 3.673 4 C -0.180 4.180 5 C 0.041 3.959 6 C 0.072 3.928 7 N -0.519 5.519 8 C 0.036 3.964 9 C 0.172 3.828 10 H 0.046 0.954 11 C -0.165 4.165 12 C -0.514 4.514 13 H 0.071 0.929 14 C 0.092 3.908 15 N -0.896 5.896 16 Si 0.876 3.124 17 H -0.237 1.237 18 H -0.312 1.312 19 H -0.269 1.269 20 C -0.164 4.164 21 Br -0.022 7.022 22 C 0.166 3.834 23 N -0.539 5.539 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.145 0.855 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.013 0.987 33 H 0.029 0.971 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.263 0.737 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -4.410 -12.283 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.148 3.852 4 C -0.202 4.202 5 C 0.031 3.969 6 C -0.055 4.055 7 N -0.245 5.245 8 C -0.112 4.112 9 C 0.068 3.932 10 H 0.064 0.936 11 C -0.224 4.224 12 C -0.552 4.552 13 H 0.089 0.911 14 C -0.112 4.112 15 N -0.533 5.533 16 Si 0.704 3.296 17 H -0.161 1.161 18 H -0.241 1.241 19 H -0.194 1.194 20 C -0.247 4.247 21 Br 0.063 6.937 22 C 0.009 3.991 23 N -0.264 5.264 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.163 0.837 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.467 -3.623 -11.940 18.359 hybrid contribution 0.326 -0.220 -0.612 0.727 sum -13.141 -3.843 -12.551 18.574 Atomic orbital electron populations 1.22858 0.77287 1.02853 1.02503 1.86250 1.22882 1.24447 1.87743 1.19829 0.89292 0.84608 0.91455 1.20947 0.91706 0.98803 1.08786 1.20157 0.97407 0.90284 0.89059 1.21296 0.87566 1.01401 0.95283 1.62900 1.20084 1.37063 1.04408 1.22184 0.98536 0.90441 1.00064 1.19856 0.81727 0.93177 0.98475 0.93615 1.22306 1.00926 1.00719 0.98472 1.20810 1.27692 1.09481 0.97235 0.91136 1.24949 0.94100 0.97895 0.94274 1.69975 1.45609 1.27704 1.09970 0.86785 0.84124 0.78498 0.80172 1.16081 1.24106 1.19387 1.22657 0.95769 0.93401 1.12832 1.96765 1.82643 1.16970 1.97329 1.22339 0.90707 0.94122 0.91944 1.67380 1.40118 0.98368 1.20517 0.92208 0.92339 0.88686 0.83691 0.89417 0.93622 0.89412 0.94170 0.96904 0.95221 0.93191 0.93059 0.92783 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -4.00 10.48 -18.79 -0.20 -4.20 16 3 C 0.33 4.75 7.49 -17.13 -0.13 4.62 16 4 C -0.18 -2.65 8.68 -39.28 -0.34 -2.99 16 5 C 0.04 0.65 4.59 -104.33 -0.48 0.17 16 6 C 0.07 1.24 4.07 -4.98 -0.02 1.22 16 7 N -0.52 -10.64 3.37 -237.73 -0.80 -11.44 16 8 C 0.04 0.71 8.38 60.07 0.50 1.21 16 9 C 0.17 3.85 1.70 -68.86 -0.12 3.74 16 10 H 0.05 1.07 6.51 -51.93 -0.34 0.73 16 11 C -0.17 -3.18 8.39 37.16 0.31 -2.87 16 12 C -0.51 -13.89 7.68 -34.44 -0.26 -14.16 16 13 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 14 C 0.09 2.62 5.46 -17.82 -0.10 2.53 16 15 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 16 Si 0.88 21.94 24.13 -169.99 -4.10 17.84 16 17 H -0.24 -5.69 5.74 56.52 0.32 -5.36 16 18 H -0.31 -8.14 7.11 56.52 0.40 -7.74 16 19 H -0.27 -6.49 6.49 56.52 0.37 -6.12 16 20 C -0.16 -2.61 6.24 -39.38 -0.25 -2.86 16 21 Br -0.02 -0.37 28.15 -68.01 -1.91 -2.28 16 22 C 0.17 2.36 10.93 -17.53 -0.19 2.17 16 23 N -0.54 -7.81 9.21 -13.31 -0.12 -7.93 16 24 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 25 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 29 H 0.05 0.72 6.63 -51.92 -0.34 0.37 16 30 H 0.09 2.00 6.92 -51.93 -0.36 1.64 16 31 H 0.04 0.75 6.65 -51.93 -0.35 0.40 16 32 H 0.01 0.23 6.76 -51.93 -0.35 -0.12 16 33 H 0.03 0.49 6.45 -51.93 -0.33 0.16 16 34 H 0.05 0.97 6.84 -51.93 -0.36 0.61 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -30.15 311.34 -6.68 -36.84 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.99 Total: -1.34 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.02 Total: -5.78 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.15 Total: -45.77 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.10 Total: 17.84 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -1.91 Total: -2.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.15 -6.68 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598593311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.990 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds