Wall clock time and date at job start Tue Mar 31 2020 15:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35695 * 116.99408 * 2 1 4 4 C 1.38919 * 119.66914 * 180.27223 * 3 2 1 5 5 C 1.38382 * 119.11866 * 180.20580 * 4 3 2 6 6 C 1.50696 * 120.75778 * 179.80194 * 5 4 3 7 7 N 1.46897 * 109.47425 * 262.12821 * 6 5 4 8 8 C 1.46901 * 110.99879 * 64.12996 * 7 6 5 9 9 C 1.46899 * 111.00211 * 188.08621 * 7 6 5 10 10 H 1.08995 * 109.47024 * 54.99976 * 9 7 6 11 11 C 1.52999 * 109.46911 * 294.99838 * 9 7 6 12 12 C 1.50702 * 109.47030 * 174.99726 * 9 7 6 13 13 H 1.07999 * 119.99775 * 114.61415 * 12 9 7 14 14 C 1.37874 * 120.00151 * 294.61814 * 12 9 7 15 15 N 1.31514 * 119.99894 * 170.63570 * 14 12 9 16 16 Si 1.86797 * 120.00218 * 350.63659 * 14 12 9 17 17 H 1.48504 * 109.46998 * 86.69394 * 16 14 12 18 18 H 1.48493 * 109.47105 * 206.69330 * 16 14 12 19 19 H 1.48502 * 109.46811 * 326.69679 * 16 14 12 20 20 C 1.38893 * 118.47548 * 359.53219 * 5 4 3 21 21 Br 1.89101 * 120.36197 * 180.27055 * 20 5 4 22 22 C 1.38127 * 119.27568 * 0.24822 * 20 5 4 23 23 N 1.31968 * 120.81827 * 359.97438 * 22 20 5 24 24 H 1.09001 * 109.47481 * 299.99832 * 1 2 3 25 25 H 1.09002 * 109.47398 * 60.00010 * 1 2 3 26 26 H 1.09006 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.43801 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.46856 * 142.12938 * 6 5 4 29 29 H 1.09007 * 109.47296 * 22.12925 * 6 5 4 30 30 H 1.09002 * 109.46973 * 177.77489 * 8 7 6 31 31 H 1.08996 * 109.47310 * 297.77927 * 8 7 6 32 32 H 1.09003 * 109.46968 * 57.77912 * 8 7 6 33 33 H 1.08999 * 109.47046 * 54.48594 * 11 9 7 34 34 H 1.08995 * 109.47533 * 294.47818 * 11 9 7 35 35 H 1.09000 * 109.46654 * 174.48173 * 11 9 7 36 36 H 0.97002 * 120.00059 * 180.02562 * 15 14 12 37 37 H 1.07993 * 119.59517 * 180.02562 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 3.4326 1.2740 -0.0057 5 6 4.0488 2.5130 -0.0013 6 6 5.5515 2.6263 -0.0028 7 7 6.0274 2.8465 1.3694 8 6 5.7257 1.6898 2.2232 9 6 7.4641 3.1524 1.3857 10 1 7.6623 4.0011 0.7311 11 6 8.2503 1.9351 0.8948 12 6 7.8895 3.4919 2.7910 13 1 8.5800 2.8489 3.3164 14 6 7.3970 4.6234 3.4060 15 7 7.6180 4.8246 4.6867 16 14 6.4161 5.8705 2.4202 17 1 4.9853 5.4732 2.4035 18 1 6.5503 7.2111 3.0446 19 1 6.9328 5.9184 1.0288 20 6 3.2506 3.6496 -0.0013 21 35 4.0365 5.3695 -0.0030 22 6 1.8764 3.5099 -0.0003 23 7 1.3184 2.3140 0.0000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0226 0.3693 -0.0098 28 1 5.8519 3.4652 -0.6305 29 1 5.9850 1.7060 -0.3944 30 1 6.1236 1.8627 3.2232 31 1 4.6460 1.5522 2.2804 32 1 6.1839 0.7961 1.7994 33 1 7.8747 1.6298 -0.0818 34 1 8.1302 1.1153 1.6029 35 1 9.3061 2.1933 0.8135 36 1 7.2712 5.6205 5.1196 37 1 1.2508 4.3902 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598593311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:26 Heat of formation + Delta-G solvation = -4.426999 kcal Electronic energy + Delta-G solvation = -20811.706091 eV Core-core repulsion = 17635.560199 eV Total energy + Delta-G solvation = -3176.145892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.85351 -39.57317 -38.58483 -35.08604 -33.91389 -33.06213 -31.25418 -30.29412 -28.63901 -27.94433 -27.38257 -25.36724 -24.38135 -22.63123 -20.90448 -19.04637 -18.76204 -18.32098 -17.18107 -16.82163 -16.73249 -16.28064 -15.87882 -15.53451 -15.13336 -14.91094 -14.74738 -14.57995 -14.12755 -13.60005 -13.28733 -13.11429 -13.05100 -12.78753 -12.69842 -12.41144 -12.37521 -12.18903 -11.80056 -11.67105 -11.48721 -11.27952 -11.18578 -10.68711 -10.68254 -10.37069 -9.40128 -8.86161 -8.19295 -6.28361 -0.13090 -0.01825 0.62535 1.50577 1.61139 1.67433 2.01200 2.46983 2.57482 3.05824 3.16879 3.53912 3.60212 3.81160 3.88365 4.25256 4.39969 4.43408 4.50607 4.51771 4.54479 4.60391 4.68925 4.73318 4.74824 4.78521 4.88217 5.01828 5.15641 5.21196 5.38615 5.50573 5.69024 6.07322 6.12495 6.47289 6.58478 6.62757 6.86207 7.46611 8.91608 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.006345 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.480288 B = 4411.708559 C = 5429.698217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.324 3.676 4 C -0.180 4.180 5 C 0.029 3.971 6 C 0.077 3.923 7 N -0.535 5.535 8 C 0.048 3.952 9 C 0.177 3.823 10 H 0.042 0.958 11 C -0.158 4.158 12 C -0.508 4.508 13 H 0.032 0.968 14 C 0.041 3.959 15 N -0.947 5.947 16 Si 0.929 3.071 17 H -0.222 1.222 18 H -0.329 1.329 19 H -0.254 1.254 20 C -0.176 4.176 21 Br -0.037 7.037 22 C 0.171 3.829 23 N -0.541 5.541 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.125 0.875 27 H 0.160 0.840 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.260 0.740 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.517 -5.567 -14.584 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.219 6.219 3 C 0.146 3.854 4 C -0.201 4.201 5 C 0.020 3.980 6 C -0.050 4.050 7 N -0.260 5.260 8 C -0.100 4.100 9 C 0.071 3.929 10 H 0.059 0.941 11 C -0.217 4.217 12 C -0.546 4.546 13 H 0.050 0.950 14 C -0.159 4.159 15 N -0.586 5.586 16 Si 0.756 3.244 17 H -0.145 1.145 18 H -0.259 1.259 19 H -0.178 1.178 20 C -0.259 4.259 21 Br 0.048 6.952 22 C 0.014 3.986 23 N -0.266 5.266 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.178 0.822 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.312 -4.815 -14.271 21.478 hybrid contribution 0.825 -0.012 0.071 0.828 sum -14.487 -4.827 -14.200 20.852 Atomic orbital electron populations 1.23134 0.75419 1.04943 1.02500 1.86254 1.24725 1.23660 1.87301 1.20010 0.89531 0.85110 0.90792 1.21065 0.92063 0.98793 1.08218 1.20070 0.96711 0.90966 0.90269 1.21257 0.88497 1.02458 0.92832 1.62484 1.18556 1.38013 1.06904 1.22019 0.99093 0.90972 0.97962 1.19638 0.83460 0.94528 0.95243 0.94058 1.22192 1.00586 0.99034 0.99877 1.21058 1.26174 1.08244 0.99110 0.94964 1.25679 0.95482 0.99870 0.94836 1.70110 1.48212 1.28502 1.11818 0.86004 0.83695 0.75421 0.79254 1.14492 1.25854 1.17818 1.22722 0.96460 0.92603 1.14079 1.96733 1.83025 1.18057 1.97418 1.22690 0.90396 0.94836 0.90701 1.67468 1.40116 0.98470 1.20523 0.92523 0.91973 0.85671 0.82197 0.89436 0.91473 0.93357 0.93042 0.94854 0.91944 0.93677 0.93117 0.93106 0.79535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.38 113.37 1.18 1.73 16 2 O -0.31 -7.21 10.48 -90.14 -0.94 -8.15 16 3 C 0.32 8.46 7.49 84.80 0.63 9.09 16 4 C -0.18 -4.70 8.68 22.47 0.20 -4.50 16 5 C 0.03 0.86 4.59 -19.67 -0.09 0.77 16 6 C 0.08 2.39 4.07 85.56 0.35 2.74 16 7 N -0.53 -20.87 3.37 -906.05 -3.05 -23.92 16 8 C 0.05 1.81 8.38 127.69 1.07 2.88 16 9 C 0.18 7.70 1.70 44.17 0.08 7.78 16 10 H 0.04 1.86 6.51 -2.39 -0.02 1.84 16 11 C -0.16 -5.74 8.39 71.98 0.60 -5.14 16 12 C -0.51 -27.93 7.68 25.60 0.20 -27.73 16 13 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 14 C 0.04 2.35 5.46 84.65 0.46 2.81 16 15 N -0.95 -59.49 13.96 21.45 0.30 -59.20 16 16 Si 0.93 45.73 24.13 68.60 1.66 47.38 16 17 H -0.22 -10.26 5.74 99.48 0.57 -9.69 16 18 H -0.33 -16.96 7.11 99.48 0.71 -16.25 16 19 H -0.25 -11.71 6.49 99.48 0.65 -11.06 16 20 C -0.18 -5.15 6.24 22.40 0.14 -5.01 16 21 Br -0.04 -1.17 28.15 -20.37 -0.57 -1.74 16 22 C 0.17 4.39 10.93 84.65 0.93 5.31 16 23 N -0.54 -14.11 9.21 -308.88 -2.85 -16.96 16 24 H 0.06 0.95 8.10 -2.39 -0.02 0.94 16 25 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 26 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.09 2.75 7.04 -2.39 -0.02 2.74 16 29 H 0.07 1.81 6.63 -2.38 -0.02 1.80 16 30 H 0.05 2.21 6.92 -2.39 -0.02 2.20 16 31 H 0.05 1.82 6.65 -2.39 -0.02 1.80 16 32 H 0.03 1.11 6.76 -2.39 -0.02 1.10 16 33 H 0.06 1.86 6.45 -2.39 -0.02 1.84 16 34 H 0.04 1.67 6.84 -2.39 -0.02 1.65 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -65.96 311.34 1.15 -64.80 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.88 Total: 7.05 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.74 Total: -9.27 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -5.60 Total: -100.08 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.94 Total: -8.15 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.66 Total: 47.38 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -0.57 Total: -1.74 kcal Total: -65.96 1.15 -64.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598593311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.375 kcal (2) G-P(sol) polarization free energy of solvation -65.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds