Wall clock time and date at job start Tue Mar 31 2020 15:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00294 * 2 1 4 4 C 1.53003 * 109.47052 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46998 * 65.00105 * 4 3 2 6 6 C 1.36928 * 120.00013 * 269.99764 * 5 4 3 7 7 H 1.08001 * 120.00020 * 146.12983 * 6 5 4 8 8 C 1.38809 * 120.00165 * 326.13115 * 6 5 4 9 9 N 1.31621 * 119.99783 * 336.91398 * 8 6 5 10 10 Si 1.86804 * 120.00064 * 156.91289 * 8 6 5 11 11 H 1.48502 * 109.47175 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47053 * 119.99961 * 10 8 6 13 13 H 1.48496 * 109.46906 * 239.99939 * 10 8 6 14 14 C 1.46505 * 119.99593 * 89.99816 * 5 4 3 15 15 C 1.50696 * 109.46893 * 91.64613 * 14 5 4 16 16 C 1.38239 * 119.60947 * 95.19148 * 15 14 5 17 17 C 1.38613 * 119.17267 * 179.97438 * 16 15 14 18 18 C 1.50699 * 120.79244 * 179.97438 * 17 16 15 19 19 C 1.38751 * 118.41182 * 0.02562 * 17 16 15 20 20 Br 1.89099 * 120.42623 * 179.97438 * 19 17 16 21 21 C 1.38277 * 119.14378 * 359.97438 * 19 17 16 22 22 N 1.31854 * 119.61032 * 274.91370 * 15 14 5 23 23 H 1.08999 * 109.47258 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47291 * 300.00314 * 1 2 3 25 25 H 1.09000 * 109.46632 * 60.00186 * 1 2 3 26 26 H 1.09001 * 109.47235 * 59.99839 * 3 2 1 27 27 H 1.09000 * 109.47112 * 300.00083 * 3 2 1 28 28 H 1.08994 * 109.47185 * 305.00316 * 4 3 2 29 29 H 1.09003 * 109.46947 * 184.99875 * 4 3 2 30 30 H 0.97003 * 119.99577 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47444 * 331.64234 * 14 5 4 32 32 H 1.08998 * 109.46775 * 211.64135 * 14 5 4 33 33 H 1.07997 * 120.40786 * 0.02562 * 16 15 14 34 34 H 1.08997 * 109.47281 * 89.99993 * 18 17 16 35 35 H 1.08995 * 109.47166 * 210.00476 * 18 17 16 36 36 H 1.09002 * 109.47252 * 330.00252 * 18 17 16 37 37 H 1.08005 * 119.62095 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0978 -0.7976 -1.3345 7 1 3.8803 -1.3030 -2.2638 8 6 4.5001 -1.5281 -0.2248 9 7 5.1860 -0.9435 0.7345 10 14 4.0679 -3.3406 -0.0929 11 1 3.2985 -3.7547 -1.2936 12 1 5.3152 -4.1417 -0.0045 13 1 3.2472 -3.5665 1.1238 14 6 4.2883 1.3997 -2.4130 15 6 5.7548 1.7466 -2.4034 16 6 6.6430 0.9791 -3.1336 17 6 7.9898 1.3067 -3.1188 18 6 8.9898 0.4948 -3.9008 19 6 8.3952 2.3993 -2.3658 20 35 10.2187 2.8964 -2.3043 21 6 7.4487 3.1199 -1.6608 22 7 6.1748 2.7818 -1.7032 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5683 0.8426 29 1 3.9786 2.1764 0.0902 30 1 5.4667 -1.4539 1.5101 31 1 3.6981 2.3150 -2.3709 32 1 4.0497 0.8552 -3.3266 33 1 6.2917 0.1354 -3.7090 34 1 9.0911 0.9107 -4.9032 35 1 9.9554 0.5236 -3.3961 36 1 8.6462 -0.5374 -3.9689 37 1 7.7557 3.9720 -1.0725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600172823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:05 Heat of formation + Delta-G solvation = 12.509017 kcal Electronic energy + Delta-G solvation = -20466.276949 eV Core-core repulsion = 17290.865458 eV Total energy + Delta-G solvation = -3175.411491 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.74777 -37.19710 -35.45796 -33.73757 -32.18345 -31.20767 -29.91839 -28.36335 -27.38307 -25.70998 -25.64405 -23.14313 -22.65046 -21.01234 -19.79937 -16.86151 -16.16007 -15.82192 -15.55754 -15.11901 -14.87841 -14.56879 -14.15236 -13.98932 -13.46526 -13.42308 -12.92680 -12.48405 -12.40865 -12.32156 -11.83374 -11.64847 -11.19235 -10.99758 -10.89774 -10.83437 -10.66427 -10.62414 -10.18948 -10.07775 -9.99089 -9.72898 -8.96473 -8.93162 -8.81841 -8.46171 -8.25375 -6.68720 -5.79053 -3.29409 1.45625 1.73930 1.90094 3.40379 3.48778 3.51006 4.19378 4.53513 4.70912 4.90779 5.00200 5.12397 5.36587 5.47476 5.54070 5.71599 5.73807 5.77711 5.81813 5.90006 6.03612 6.08287 6.16138 6.20595 6.22900 6.29810 6.46503 6.56620 6.66951 6.72394 6.82887 7.16331 7.69438 7.80586 8.07396 8.48530 8.57345 9.13186 9.77734 10.30832 11.20700 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.003895 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.956685 B = 7187.579736 C = 7917.683282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.050 3.950 4 C 0.138 3.862 5 N -0.556 5.556 6 C -0.242 4.242 7 H 0.063 0.937 8 C 0.020 3.980 9 N -0.881 5.881 10 Si 0.901 3.099 11 H -0.276 1.276 12 H -0.295 1.295 13 H -0.287 1.287 14 C 0.182 3.818 15 C 0.152 3.848 16 C -0.152 4.152 17 C -0.018 4.018 18 C -0.120 4.120 19 C -0.170 4.170 20 Br -0.063 7.063 21 C 0.135 3.865 22 N -0.476 5.476 23 H 0.073 0.927 24 H 0.026 0.974 25 H 0.029 0.971 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.254 0.746 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 7.438 -6.783 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C -0.029 4.029 4 C 0.012 3.988 5 N -0.273 5.273 6 C -0.371 4.371 7 H 0.081 0.919 8 C -0.181 4.181 9 N -0.522 5.522 10 Si 0.731 3.269 11 H -0.201 1.201 12 H -0.222 1.222 13 H -0.213 1.213 14 C 0.054 3.946 15 C 0.012 3.988 16 C -0.174 4.174 17 C -0.028 4.028 18 C -0.177 4.177 19 C -0.252 4.252 20 Br 0.021 6.979 21 C -0.026 4.026 22 N -0.187 5.187 23 H 0.092 0.908 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.124 0.876 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.971 7.839 -6.129 11.123 hybrid contribution -0.065 -1.324 -0.083 1.329 sum 4.906 6.515 -6.212 10.252 Atomic orbital electron populations 1.22628 0.84304 1.01423 0.98422 1.88215 1.16510 1.27779 1.94831 1.23346 0.98517 0.84061 0.96985 1.21165 0.87591 0.97517 0.92515 1.44018 1.72183 1.02379 1.08767 1.19013 1.38803 0.81030 0.98269 0.91904 1.25038 0.96553 0.97935 0.98569 1.69980 1.35608 1.36080 1.10561 0.86266 0.77552 0.85071 0.77998 1.20096 1.22201 1.21348 1.20185 0.86158 0.94992 0.93245 1.22948 1.00633 0.87579 0.87675 1.21804 0.91882 1.01559 1.02183 1.20095 0.95185 0.93024 0.94464 1.20926 0.97861 0.99521 0.99408 1.22570 0.90924 1.03000 1.08746 1.96543 1.11257 1.91686 1.98432 1.22618 0.87985 0.97443 0.94525 1.67677 1.15449 1.17173 1.18382 0.90795 0.95559 0.95266 0.95558 0.95339 0.87560 0.93206 0.93604 0.92517 0.91868 0.84711 0.90645 0.90688 0.90695 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.75 10.18 -35.23 -0.36 -8.11 16 3 C 0.05 1.01 6.28 37.16 0.23 1.24 16 4 C 0.14 3.22 5.72 -4.04 -0.02 3.20 16 5 N -0.56 -13.22 2.42 -174.61 -0.42 -13.64 16 6 C -0.24 -6.31 8.99 -15.06 -0.14 -6.45 16 7 H 0.06 1.64 7.93 -52.49 -0.42 1.22 16 8 C 0.02 0.54 4.95 -17.43 -0.09 0.45 16 9 N -0.88 -25.09 11.31 55.49 0.63 -24.46 16 10 Si 0.90 21.86 29.61 -169.99 -5.03 16.83 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.18 3.68 5.98 -5.19 -0.03 3.65 16 15 C 0.15 3.07 6.36 -82.58 -0.53 2.55 16 16 C -0.15 -2.84 9.43 -39.44 -0.37 -3.21 16 17 C -0.02 -0.31 5.92 -104.29 -0.62 -0.93 16 18 C -0.12 -1.62 9.63 36.01 0.35 -1.28 16 19 C -0.17 -2.87 6.24 -39.38 -0.25 -3.11 16 20 Br -0.06 -0.87 31.98 -68.01 -2.17 -3.05 16 21 C 0.13 2.41 10.94 -17.52 -0.19 2.21 16 22 N -0.48 -9.59 10.27 -9.45 -0.10 -9.69 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.11 2.87 5.31 -51.93 -0.28 2.60 16 29 H 0.05 1.13 8.07 -51.93 -0.42 0.71 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 32 H 0.06 1.19 7.95 -51.93 -0.41 0.78 16 33 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.98 6.78 -51.93 -0.35 0.63 16 36 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.15 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -29.65 334.02 -8.19 -37.84 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.23 Total: -0.68 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.54 Total: -0.07 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.11 Total: -47.79 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.36 Total: -8.11 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -2.17 Total: -3.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.65 -8.19 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600172823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.346 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds