Wall clock time and date at job start Tue Mar 31 2020 15:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00294 * 2 1 4 4 C 1.53003 * 109.47052 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46998 * 65.00105 * 4 3 2 6 6 C 1.36928 * 120.00013 * 269.99764 * 5 4 3 7 7 H 1.08001 * 120.00020 * 146.12983 * 6 5 4 8 8 C 1.38809 * 120.00165 * 326.13115 * 6 5 4 9 9 N 1.31621 * 119.99783 * 336.91398 * 8 6 5 10 10 Si 1.86804 * 120.00064 * 156.91289 * 8 6 5 11 11 H 1.48502 * 109.47175 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47053 * 119.99961 * 10 8 6 13 13 H 1.48496 * 109.46906 * 239.99939 * 10 8 6 14 14 C 1.46505 * 119.99593 * 89.99816 * 5 4 3 15 15 C 1.50696 * 109.46893 * 91.64613 * 14 5 4 16 16 C 1.38239 * 119.60947 * 95.19148 * 15 14 5 17 17 C 1.38613 * 119.17267 * 179.97438 * 16 15 14 18 18 C 1.50699 * 120.79244 * 179.97438 * 17 16 15 19 19 C 1.38751 * 118.41182 * 0.02562 * 17 16 15 20 20 Br 1.89099 * 120.42623 * 179.97438 * 19 17 16 21 21 C 1.38277 * 119.14378 * 359.97438 * 19 17 16 22 22 N 1.31854 * 119.61032 * 274.91370 * 15 14 5 23 23 H 1.08999 * 109.47258 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47291 * 300.00314 * 1 2 3 25 25 H 1.09000 * 109.46632 * 60.00186 * 1 2 3 26 26 H 1.09001 * 109.47235 * 59.99839 * 3 2 1 27 27 H 1.09000 * 109.47112 * 300.00083 * 3 2 1 28 28 H 1.08994 * 109.47185 * 305.00316 * 4 3 2 29 29 H 1.09003 * 109.46947 * 184.99875 * 4 3 2 30 30 H 0.97003 * 119.99577 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47444 * 331.64234 * 14 5 4 32 32 H 1.08998 * 109.46775 * 211.64135 * 14 5 4 33 33 H 1.07997 * 120.40786 * 0.02562 * 16 15 14 34 34 H 1.08997 * 109.47281 * 89.99993 * 18 17 16 35 35 H 1.08995 * 109.47166 * 210.00476 * 18 17 16 36 36 H 1.09002 * 109.47252 * 330.00252 * 18 17 16 37 37 H 1.08005 * 119.62095 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0978 -0.7976 -1.3345 7 1 3.8803 -1.3030 -2.2638 8 6 4.5001 -1.5281 -0.2248 9 7 5.1860 -0.9435 0.7345 10 14 4.0679 -3.3406 -0.0929 11 1 3.2985 -3.7547 -1.2936 12 1 5.3152 -4.1417 -0.0045 13 1 3.2472 -3.5665 1.1238 14 6 4.2883 1.3997 -2.4130 15 6 5.7548 1.7466 -2.4034 16 6 6.6430 0.9791 -3.1336 17 6 7.9898 1.3067 -3.1188 18 6 8.9898 0.4948 -3.9008 19 6 8.3952 2.3993 -2.3658 20 35 10.2187 2.8964 -2.3043 21 6 7.4487 3.1199 -1.6608 22 7 6.1748 2.7818 -1.7032 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5683 0.8426 29 1 3.9786 2.1764 0.0902 30 1 5.4667 -1.4539 1.5101 31 1 3.6981 2.3150 -2.3709 32 1 4.0497 0.8552 -3.3266 33 1 6.2917 0.1354 -3.7090 34 1 9.0911 0.9107 -4.9032 35 1 9.9554 0.5236 -3.3961 36 1 8.6462 -0.5374 -3.9689 37 1 7.7557 3.9720 -1.0725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600172823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:04 Heat of formation + Delta-G solvation = -4.546755 kcal Electronic energy + Delta-G solvation = -20467.016543 eV Core-core repulsion = 17290.865458 eV Total energy + Delta-G solvation = -3176.151085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17444 -38.79767 -37.13836 -35.12890 -33.78786 -32.88250 -31.37238 -29.95992 -28.62781 -27.43924 -27.03822 -24.87359 -24.05163 -22.61605 -21.40391 -18.68893 -17.64039 -17.38586 -17.00283 -16.67940 -16.48715 -16.14275 -15.67240 -15.53976 -15.20893 -14.88103 -14.41675 -13.82522 -13.66610 -13.52293 -13.42019 -13.28946 -12.77392 -12.69412 -12.54884 -12.38236 -12.27390 -12.11600 -11.87929 -11.83576 -11.50987 -11.31645 -10.54340 -10.32936 -10.32374 -10.25730 -9.65103 -8.59189 -7.76349 -5.30670 0.04674 0.34215 0.59362 1.46317 1.51966 1.59181 2.54655 2.78120 3.23514 3.37326 3.52908 3.74410 3.76834 3.85162 4.10474 4.43214 4.48855 4.53932 4.56931 4.60968 4.66414 4.71695 4.75492 4.79573 4.84339 4.88482 5.03179 5.04261 5.08197 5.20514 5.29201 5.71861 5.73157 5.86165 6.44281 6.68054 7.10817 7.20452 7.88790 8.39188 9.20609 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.003895 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.956685 B = 7187.579736 C = 7917.683282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.059 3.941 4 C 0.141 3.859 5 N -0.570 5.570 6 C -0.234 4.234 7 H 0.060 0.940 8 C -0.026 4.026 9 N -0.915 5.915 10 Si 0.948 3.052 11 H -0.267 1.267 12 H -0.298 1.298 13 H -0.297 1.297 14 C 0.184 3.816 15 C 0.133 3.867 16 C -0.165 4.165 17 C -0.021 4.021 18 C -0.118 4.118 19 C -0.173 4.173 20 Br -0.029 7.029 21 C 0.123 3.877 22 N -0.499 5.499 23 H 0.082 0.918 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.245 0.755 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 7.961 -8.121 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.020 4.020 4 C 0.014 3.986 5 N -0.288 5.288 6 C -0.364 4.364 7 H 0.078 0.922 8 C -0.223 4.223 9 N -0.559 5.559 10 Si 0.778 3.222 11 H -0.191 1.191 12 H -0.226 1.226 13 H -0.225 1.225 14 C 0.057 3.943 15 C -0.006 4.006 16 C -0.186 4.186 17 C -0.031 4.031 18 C -0.174 4.174 19 C -0.255 4.255 20 Br 0.056 6.944 21 C -0.037 4.037 22 N -0.210 5.210 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.427 8.381 -7.503 12.490 hybrid contribution -0.104 -1.322 0.224 1.345 sum 5.323 7.060 -7.279 11.452 Atomic orbital electron populations 1.22823 0.81608 1.02623 1.00056 1.88135 1.19567 1.28594 1.95184 1.23145 0.96323 0.84033 0.98460 1.20982 0.89836 0.96308 0.91427 1.44001 1.73375 1.02088 1.09347 1.19114 1.37104 0.82419 0.97792 0.92217 1.25518 0.97409 1.00473 0.98854 1.70118 1.37899 1.36800 1.11115 0.85522 0.76916 0.82198 0.77590 1.19145 1.22578 1.22451 1.20189 0.86813 0.95045 0.92233 1.22878 1.00536 0.88495 0.88698 1.21972 0.92730 1.01566 1.02370 1.20519 0.95291 0.93085 0.94181 1.21004 0.96900 0.99363 1.00164 1.22817 0.92738 1.02438 1.07495 1.96572 1.08132 1.91393 1.98332 1.23015 0.87646 0.98177 0.94870 1.67621 1.16910 1.17659 1.18828 0.89927 0.93741 0.93670 0.93711 0.93956 0.91240 0.93497 0.94552 0.91483 0.90716 0.83994 0.88162 0.90135 0.90180 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -17.02 10.18 -148.98 -1.52 -18.54 16 3 C 0.06 2.34 6.28 71.98 0.45 2.79 16 4 C 0.14 6.65 5.72 86.38 0.49 7.14 16 5 N -0.57 -27.20 2.42 -706.35 -1.71 -28.91 16 6 C -0.23 -12.30 8.99 84.03 0.76 -11.54 16 7 H 0.06 3.11 7.93 -2.91 -0.02 3.09 16 8 C -0.03 -1.41 4.95 84.86 0.42 -0.99 16 9 N -0.91 -53.66 11.31 21.65 0.24 -53.41 16 10 Si 0.95 45.60 29.61 68.60 2.03 47.63 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 14 C 0.18 7.39 5.98 85.63 0.51 7.90 16 15 C 0.13 5.35 6.36 42.55 0.27 5.62 16 16 C -0.16 -6.00 9.43 22.36 0.21 -5.79 16 17 C -0.02 -0.68 5.92 -19.65 -0.12 -0.80 16 18 C -0.12 -2.86 9.63 71.24 0.69 -2.17 16 19 C -0.17 -5.52 6.24 22.40 0.14 -5.38 16 20 Br -0.03 -0.72 31.98 -20.37 -0.65 -1.37 16 21 C 0.12 4.25 10.94 84.70 0.93 5.18 16 22 N -0.50 -19.94 10.27 -183.81 -1.89 -21.83 16 23 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 3.88 5.31 -2.39 -0.01 3.87 16 29 H 0.05 2.17 8.07 -2.39 -0.02 2.15 16 30 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.07 2.50 8.06 -2.39 -0.02 2.48 16 32 H 0.07 2.77 7.95 -2.39 -0.02 2.75 16 33 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 1.87 6.78 -2.39 -0.02 1.86 16 36 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 37 H 0.17 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -64.09 334.02 3.57 -60.52 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.06 Total: 11.89 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 6.00 Total: 4.00 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.35 Total: -104.14 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -1.52 Total: -18.54 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -0.65 Total: -1.37 kcal Total: -64.09 3.57 -60.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600172823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.973 kcal (2) G-P(sol) polarization free energy of solvation -64.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds