Wall clock time and date at job start Tue Mar 31 2020 15:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28720 * 125.86842 * 2 1 4 4 N 1.28633 * 110.17991 * 179.97438 * 3 2 1 5 5 C 1.33774 * 108.88459 * 359.77193 * 4 3 2 6 6 C 1.35310 * 125.87156 * 179.97438 * 2 1 3 7 7 S 1.76204 * 126.91119 * 359.97438 * 6 2 1 8 8 O 1.42098 * 106.39884 * 336.45466 * 7 6 2 9 9 O 1.42104 * 106.40235 * 203.53893 * 7 6 2 10 10 N 1.65593 * 107.21858 * 89.99782 * 7 6 2 11 11 C 1.46506 * 120.00141 * 90.00260 * 10 7 6 12 12 C 1.50699 * 109.46928 * 264.99915 * 11 10 7 13 13 H 1.08003 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99865 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00518 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46948 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47174 * 120.00320 * 16 14 12 19 19 H 1.48497 * 109.47378 * 240.00235 * 16 14 12 20 20 C 1.46504 * 120.00121 * 269.99723 * 10 7 6 21 21 C 1.52997 * 109.47094 * 265.00144 * 20 10 7 22 22 F 1.39897 * 109.47132 * 60.00426 * 21 20 10 23 23 F 1.39907 * 109.46811 * 179.97438 * 21 20 10 24 24 F 1.39894 * 109.47424 * 299.99642 * 21 20 10 25 25 H 1.08993 * 109.47712 * 270.02256 * 1 2 3 26 26 H 1.08999 * 109.47350 * 30.03096 * 1 2 3 27 27 H 1.09005 * 109.46941 * 150.02826 * 1 2 3 28 28 H 1.08002 * 126.74891 * 180.23630 * 5 4 3 29 29 H 1.09004 * 109.47073 * 24.99743 * 11 10 7 30 30 H 1.09000 * 109.47212 * 144.99826 * 11 10 7 31 31 H 0.96992 * 120.00316 * 179.97438 * 15 14 12 32 32 H 1.08999 * 109.46904 * 25.00684 * 20 10 7 33 33 H 1.09000 * 109.47146 * 145.00122 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6953 0.0005 5 6 3.5321 -0.6404 0.0060 6 6 2.2578 -1.0965 0.0005 7 16 1.7363 -2.7795 0.0019 8 8 0.4240 -2.7924 0.5469 9 8 2.8115 -3.5324 0.5464 10 7 1.5906 -3.2489 -1.5795 11 6 2.7380 -3.8321 -2.2792 12 6 3.4628 -2.7530 -3.0416 13 1 3.1049 -1.7346 -3.0079 14 6 4.5836 -3.0657 -3.7812 15 7 5.0198 -4.3058 -3.8219 16 14 5.4817 -1.7283 -4.7269 17 1 4.7945 -0.4284 -4.5188 18 1 6.8810 -1.6317 -4.2391 19 1 5.4839 -2.0615 -6.1740 20 6 0.3142 -3.0810 -2.2788 21 6 -0.4857 -4.3828 -2.1997 22 9 -0.7270 -4.7012 -0.8590 23 9 -1.7049 -4.2222 -2.8670 24 9 0.2428 -5.4150 -2.8004 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5134 28 1 4.4322 -1.2373 0.0113 29 1 3.4156 -4.2821 -1.5537 30 1 2.3897 -4.5964 -2.9739 31 1 5.8080 -4.5258 -4.3426 32 1 -0.2534 -2.2767 -1.8108 33 1 0.5021 -2.8329 -3.3234 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600666791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:28 Heat of formation + Delta-G solvation = -117.792358 kcal Electronic energy + Delta-G solvation = -27980.553393 eV Core-core repulsion = 23370.565919 eV Total energy + Delta-G solvation = -4609.987474 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.060 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.80491 -47.36201 -47.23412 -43.23456 -37.27573 -36.36580 -35.75128 -34.68185 -32.85140 -31.28220 -29.50364 -28.06128 -26.66005 -23.49812 -23.17318 -22.51514 -22.26924 -19.15542 -18.55964 -18.25915 -18.11696 -17.37536 -17.23774 -16.50013 -16.25326 -16.16688 -15.76554 -14.82630 -14.34638 -14.25603 -14.19587 -13.81673 -13.73093 -13.52237 -13.43939 -13.40300 -13.29406 -12.92287 -12.81775 -12.52097 -12.23391 -12.05773 -11.90447 -11.58733 -11.45298 -11.37654 -11.08912 -10.86960 -10.74520 -10.34462 -10.20640 -10.12740 -9.68912 -8.68310 -8.63189 -6.28154 -4.37323 0.37675 1.14262 2.20189 2.49069 2.94125 3.02531 3.17399 3.27293 3.30862 3.75652 4.03114 4.06738 4.19261 4.25641 4.35884 4.56401 4.74357 4.82179 4.90375 5.07828 5.15154 5.21374 5.40678 5.53932 5.74464 6.11034 6.30640 6.76999 7.12786 7.20315 7.65113 7.88224 8.32296 8.66595 9.31431 10.79722 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.008220 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.049505 B = 3405.338590 C = 5219.534622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.230 5.230 3 N -0.051 5.051 4 N -0.281 5.281 5 C 0.088 3.912 6 C -0.589 4.589 7 S 2.714 3.286 8 O -0.956 6.956 9 O -0.923 6.923 10 N -0.971 5.971 11 C 0.233 3.767 12 C -0.553 4.553 13 H 0.062 0.938 14 C 0.072 3.928 15 N -0.881 5.881 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.282 1.282 20 C 0.090 3.910 21 C 0.431 3.569 22 F -0.177 7.177 23 F -0.187 7.187 24 F -0.172 7.172 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.208 0.792 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.267 0.733 32 H 0.106 0.894 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 3.735 4.325 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.028 5.028 3 N -0.033 5.033 4 N -0.144 5.144 5 C -0.073 4.073 6 C -0.799 4.799 7 S 2.795 3.205 8 O -0.945 6.945 9 O -0.912 6.912 10 N -0.809 5.809 11 C 0.113 3.887 12 C -0.592 4.592 13 H 0.081 0.919 14 C -0.133 4.133 15 N -0.518 5.518 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.208 1.208 20 C -0.040 4.040 21 C 0.374 3.626 22 F -0.158 7.158 23 F -0.169 7.169 24 F -0.153 7.153 25 H 0.124 0.876 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.225 0.775 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.419 4.676 4.981 13.307 hybrid contribution 0.564 0.005 -1.053 1.194 sum -10.855 4.680 3.929 12.457 Atomic orbital electron populations 1.22672 0.71863 1.06402 1.06548 1.47006 1.09160 1.02964 1.43652 1.78097 0.97167 1.12795 1.15284 1.75140 1.08900 1.12391 1.17971 1.23704 0.96748 0.91467 0.95403 1.34991 1.00683 1.18033 1.26228 1.01861 0.73662 0.72074 0.72896 1.93576 1.37711 1.86479 1.76754 1.93632 1.55875 1.65917 1.75813 1.57610 1.17430 1.74714 1.31180 1.19674 0.80745 0.94602 0.93723 1.21435 1.11839 0.94904 1.31026 0.91940 1.24890 0.96708 0.95541 0.96129 1.69922 1.24193 1.17525 1.40186 0.86523 0.79983 0.81835 0.79683 1.19670 1.20505 1.20760 1.22285 0.85060 0.92151 1.04504 1.21385 0.78374 0.88895 0.73961 1.93235 1.94596 1.94077 1.33893 1.93157 1.46969 1.95759 1.81002 1.93221 1.76911 1.61762 1.83429 0.87557 0.87200 0.87770 0.77549 0.91871 0.92383 0.92272 0.87587 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.52 59.84 0.63 1.26 16 2 N -0.23 -3.40 3.74 -67.16 -0.25 -3.65 16 3 N -0.05 -0.87 13.17 60.35 0.79 -0.07 16 4 N -0.28 -5.20 12.41 30.24 0.38 -4.82 16 5 C 0.09 1.57 11.85 -17.74 -0.21 1.36 16 6 C -0.59 -9.82 7.06 -17.05 -0.12 -9.95 16 7 S 2.71 46.57 5.58 -107.50 -0.60 45.97 16 8 O -0.96 -15.25 13.29 -57.17 -0.76 -16.01 16 9 O -0.92 -18.66 16.43 -57.17 -0.94 -19.60 16 10 N -0.97 -17.07 2.67 -115.66 -0.31 -17.38 16 11 C 0.23 5.10 5.25 -5.19 -0.03 5.07 16 12 C -0.55 -13.19 9.38 -34.44 -0.32 -13.52 16 13 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 14 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.88 -23.57 13.29 55.43 0.74 -22.83 16 16 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.09 1.25 5.42 -4.04 -0.02 1.23 16 21 C 0.43 6.36 3.29 37.16 0.12 6.48 16 22 F -0.18 -2.81 15.58 2.25 0.04 -2.77 16 23 F -0.19 -2.49 17.32 2.25 0.04 -2.45 16 24 F -0.17 -2.90 15.70 2.25 0.04 -2.87 16 25 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.10 0.90 4.89 -51.93 -0.25 0.65 16 28 H 0.21 3.40 8.06 -52.49 -0.42 2.98 16 29 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 30 H 0.06 1.33 6.73 -51.93 -0.35 0.98 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.11 1.08 5.74 -51.93 -0.30 0.79 16 33 H 0.13 1.73 8.11 -51.93 -0.42 1.31 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -30.81 311.09 -3.72 -34.53 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.40 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.05 Total: -6.33 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 1.35 Total: -48.75 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.70 Total: -35.61 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 0.11 Total: -8.08 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 46.57 SS G_CDS: -0.60 Total: 45.97 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.81 -3.72 -34.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600666791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.266 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds