Wall clock time and date at job start Tue Mar 31 2020 15:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28720 * 125.86842 * 2 1 4 4 N 1.28633 * 110.17991 * 179.97438 * 3 2 1 5 5 C 1.33774 * 108.88459 * 359.77193 * 4 3 2 6 6 C 1.35310 * 125.87156 * 179.97438 * 2 1 3 7 7 S 1.76204 * 126.91119 * 359.97438 * 6 2 1 8 8 O 1.42098 * 106.39884 * 336.45466 * 7 6 2 9 9 O 1.42104 * 106.40235 * 203.53893 * 7 6 2 10 10 N 1.65593 * 107.21858 * 89.99782 * 7 6 2 11 11 C 1.46506 * 120.00141 * 90.00260 * 10 7 6 12 12 C 1.50699 * 109.46928 * 264.99915 * 11 10 7 13 13 H 1.08003 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99865 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00518 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46948 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47174 * 120.00320 * 16 14 12 19 19 H 1.48497 * 109.47378 * 240.00235 * 16 14 12 20 20 C 1.46504 * 120.00121 * 269.99723 * 10 7 6 21 21 C 1.52997 * 109.47094 * 265.00144 * 20 10 7 22 22 F 1.39897 * 109.47132 * 60.00426 * 21 20 10 23 23 F 1.39907 * 109.46811 * 179.97438 * 21 20 10 24 24 F 1.39894 * 109.47424 * 299.99642 * 21 20 10 25 25 H 1.08993 * 109.47712 * 270.02256 * 1 2 3 26 26 H 1.08999 * 109.47350 * 30.03096 * 1 2 3 27 27 H 1.09005 * 109.46941 * 150.02826 * 1 2 3 28 28 H 1.08002 * 126.74891 * 180.23630 * 5 4 3 29 29 H 1.09004 * 109.47073 * 24.99743 * 11 10 7 30 30 H 1.09000 * 109.47212 * 144.99826 * 11 10 7 31 31 H 0.96992 * 120.00316 * 179.97438 * 15 14 12 32 32 H 1.08999 * 109.46904 * 25.00684 * 20 10 7 33 33 H 1.09000 * 109.47146 * 145.00122 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6953 0.0005 5 6 3.5321 -0.6404 0.0060 6 6 2.2578 -1.0965 0.0005 7 16 1.7363 -2.7795 0.0019 8 8 0.4240 -2.7924 0.5469 9 8 2.8115 -3.5324 0.5464 10 7 1.5906 -3.2489 -1.5795 11 6 2.7380 -3.8321 -2.2792 12 6 3.4628 -2.7530 -3.0416 13 1 3.1049 -1.7346 -3.0079 14 6 4.5836 -3.0657 -3.7812 15 7 5.0198 -4.3058 -3.8219 16 14 5.4817 -1.7283 -4.7269 17 1 4.7945 -0.4284 -4.5188 18 1 6.8810 -1.6317 -4.2391 19 1 5.4839 -2.0615 -6.1740 20 6 0.3142 -3.0810 -2.2788 21 6 -0.4857 -4.3828 -2.1997 22 9 -0.7270 -4.7012 -0.8590 23 9 -1.7049 -4.2222 -2.8670 24 9 0.2428 -5.4150 -2.8004 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5134 28 1 4.4322 -1.2373 0.0113 29 1 3.4156 -4.2821 -1.5537 30 1 2.3897 -4.5964 -2.9739 31 1 5.8080 -4.5258 -4.3426 32 1 -0.2534 -2.2767 -1.8108 33 1 0.5021 -2.8329 -3.3234 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600666791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:27 Heat of formation + Delta-G solvation = -140.464587 kcal Electronic energy + Delta-G solvation = -27981.536535 eV Core-core repulsion = 23370.565919 eV Total energy + Delta-G solvation = -4610.970616 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.060 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.99761 -48.51619 -48.48637 -44.50044 -38.67965 -37.81503 -37.18586 -35.83414 -34.68857 -32.58510 -30.94518 -29.02932 -28.30428 -25.01266 -24.47004 -23.93307 -23.54441 -20.47270 -19.80611 -19.47505 -19.38473 -18.74256 -18.63622 -17.97658 -17.66594 -17.46228 -17.15622 -16.47313 -15.69252 -15.46350 -15.42551 -15.18202 -14.92538 -14.70037 -14.63629 -14.59600 -14.42863 -14.22805 -14.11007 -13.87201 -13.65415 -13.47015 -13.27224 -13.13834 -13.06020 -12.72860 -12.65460 -12.47632 -12.22724 -12.06225 -11.84049 -11.42442 -10.99461 -10.59521 -10.23207 -8.20603 -6.32988 -1.00825 -0.13617 1.13450 1.15771 1.39833 1.45589 1.52300 1.64746 1.81073 2.39612 2.42183 2.85355 2.87188 3.03270 3.13797 3.19527 3.40462 3.60508 3.73389 3.89974 4.09496 4.25481 4.46412 4.53342 4.57151 4.81072 5.15593 5.19044 5.30213 5.47917 5.75369 6.01422 6.78226 7.02768 7.38086 8.87966 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.008220 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.049505 B = 3405.338590 C = 5219.534622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.213 5.213 3 N -0.055 5.055 4 N -0.308 5.308 5 C 0.070 3.930 6 C -0.592 4.592 7 S 2.730 3.270 8 O -0.940 6.940 9 O -0.958 6.958 10 N -0.975 5.975 11 C 0.248 3.752 12 C -0.545 4.545 13 H 0.068 0.932 14 C 0.025 3.975 15 N -0.917 5.917 16 Si 0.946 3.054 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.279 1.279 20 C 0.080 3.920 21 C 0.431 3.569 22 F -0.184 7.184 23 F -0.175 7.175 24 F -0.188 7.188 25 H 0.129 0.871 26 H 0.143 0.857 27 H 0.116 0.884 28 H 0.208 0.792 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.267 0.733 32 H 0.149 0.851 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 5.227 4.167 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.012 5.012 3 N -0.037 5.037 4 N -0.170 5.170 5 C -0.092 4.092 6 C -0.804 4.804 7 S 2.812 3.188 8 O -0.930 6.930 9 O -0.947 6.947 10 N -0.812 5.812 11 C 0.125 3.875 12 C -0.584 4.584 13 H 0.086 0.914 14 C -0.176 4.176 15 N -0.556 5.556 16 Si 0.772 3.228 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.204 1.204 20 C -0.048 4.048 21 C 0.374 3.626 22 F -0.165 7.165 23 F -0.157 7.157 24 F -0.170 7.170 25 H 0.147 0.853 26 H 0.161 0.839 27 H 0.134 0.866 28 H 0.225 0.775 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.167 0.833 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.391 6.181 4.824 15.518 hybrid contribution 0.991 -0.437 -0.947 1.439 sum -12.400 5.745 3.878 14.205 Atomic orbital electron populations 1.23326 0.68766 1.08693 1.08797 1.47428 1.10742 1.01753 1.41228 1.78014 0.96974 1.13234 1.15507 1.75110 1.09958 1.12665 1.19226 1.23879 0.97593 0.91628 0.96129 1.34777 1.00698 1.18089 1.26844 1.01264 0.73245 0.71832 0.72429 1.93585 1.36673 1.86426 1.76308 1.93594 1.57301 1.67251 1.76595 1.57415 1.17736 1.74807 1.31289 1.19188 0.81580 0.93933 0.92751 1.21714 1.11337 0.95460 1.29882 0.91350 1.25559 0.97787 0.96922 0.97315 1.70018 1.24926 1.19116 1.41568 0.85694 0.78699 0.79756 0.78648 1.19452 1.20920 1.20448 1.22703 0.83663 0.92834 1.05636 1.21493 0.78758 0.88726 0.73596 1.93221 1.94658 1.94172 1.34473 1.93180 1.46176 1.95642 1.80697 1.93195 1.77423 1.62672 1.83689 0.85317 0.83922 0.86588 0.77494 0.94533 0.93514 0.92357 0.83345 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.52 127.77 1.34 1.97 16 2 N -0.21 -5.69 3.74 -366.40 -1.37 -7.06 16 3 N -0.05 -1.74 13.17 37.02 0.49 -1.25 16 4 N -0.31 -11.10 12.41 -58.25 -0.72 -11.82 16 5 C 0.07 2.46 11.85 83.73 0.99 3.45 16 6 C -0.59 -18.80 7.06 83.49 0.59 -18.21 16 7 S 2.73 89.94 5.58 -56.49 -0.32 89.62 16 8 O -0.94 -27.49 13.29 -128.00 -1.70 -29.19 16 9 O -0.96 -38.89 16.43 -128.00 -2.10 -41.00 16 10 N -0.98 -32.94 2.67 -519.83 -1.39 -34.32 16 11 C 0.25 10.85 5.25 85.63 0.45 11.30 16 12 C -0.54 -25.69 9.38 25.60 0.24 -25.45 16 13 H 0.07 3.10 7.81 -2.91 -0.02 3.07 16 14 C 0.03 1.28 5.46 84.65 0.46 1.74 16 15 N -0.92 -49.66 13.29 21.45 0.28 -49.38 16 16 Si 0.95 40.85 29.54 68.60 2.03 42.87 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 20 C 0.08 2.01 5.42 86.38 0.47 2.47 16 21 C 0.43 11.86 3.29 71.98 0.24 12.10 16 22 F -0.18 -5.48 15.58 44.97 0.70 -4.78 16 23 F -0.18 -4.20 17.32 44.97 0.78 -3.42 16 24 F -0.19 -6.22 15.70 44.97 0.71 -5.52 16 25 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.12 1.46 4.89 -2.38 -0.01 1.44 16 28 H 0.21 6.98 8.06 -2.91 -0.02 6.95 16 29 H 0.04 1.81 6.91 -2.38 -0.02 1.79 16 30 H 0.05 2.16 6.73 -2.39 -0.02 2.14 16 31 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 32 H 0.15 2.40 5.74 -2.39 -0.01 2.38 16 33 H 0.15 3.37 8.11 -2.39 -0.02 3.35 16 Total: -1.00 -65.92 311.09 3.35 -62.56 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.19 Total: 3.31 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 4.78 Total: -10.62 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -2.71 Total: -103.85 kcal Atomic # 8 Polarization: -66.38 SS G_CDS: -3.80 Total: -70.18 kcal Atomic # 9 Polarization: -15.90 SS G_CDS: 2.19 Total: -13.72 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Atomic # 16 Polarization: 89.94 SS G_CDS: -0.32 Total: 89.62 kcal Total: -65.92 3.35 -62.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600666791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.902 kcal (2) G-P(sol) polarization free energy of solvation -65.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds