Wall clock time and date at job start Tue Mar 31 2020 15:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35546 * 117.00344 * 2 1 4 4 C 1.36652 * 120.23546 * 359.97438 * 3 2 1 5 5 C 1.40986 * 119.24096 * 179.97438 * 4 3 2 6 6 N 1.31898 * 120.14905 * 179.97438 * 5 4 3 7 7 C 1.46504 * 120.00154 * 173.92538 * 6 5 4 8 8 C 1.53000 * 109.47117 * 240.86545 * 7 6 5 9 9 H 1.09005 * 109.46986 * 55.00111 * 8 7 6 10 10 C 1.52996 * 109.47307 * 294.99940 * 8 7 6 11 11 C 1.52999 * 109.47011 * 174.99659 * 8 7 6 12 12 C 1.50694 * 109.47058 * 185.00131 * 11 8 7 13 13 H 1.08000 * 120.00461 * 359.97438 * 12 11 8 14 14 C 1.37880 * 120.00002 * 179.97438 * 12 11 8 15 15 N 1.31520 * 120.00082 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00075 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46759 * 90.00158 * 16 14 12 18 18 H 1.48502 * 109.47078 * 210.00364 * 16 14 12 19 19 H 1.48500 * 109.47009 * 330.00356 * 16 14 12 20 20 N 1.37481 * 119.70082 * 359.97438 * 5 4 3 21 21 H 0.96998 * 119.77427 * 179.97438 * 20 5 4 22 22 C 1.36443 * 120.45564 * 0.02562 * 20 5 4 23 23 C 1.34769 * 120.78512 * 359.97438 * 22 20 5 24 24 Br 1.89097 * 119.85684 * 179.97438 * 23 22 20 25 25 H 1.09000 * 109.46762 * 300.00342 * 1 2 3 26 26 H 1.08996 * 109.46989 * 59.99831 * 1 2 3 27 27 H 1.08995 * 109.47710 * 180.02562 * 1 2 3 28 28 H 1.08008 * 120.37756 * 0.02562 * 4 3 2 29 29 H 1.09006 * 109.46643 * 0.86510 * 7 6 5 30 30 H 1.08995 * 109.46921 * 120.86141 * 7 6 5 31 31 H 1.09005 * 109.46781 * 300.00294 * 10 8 7 32 32 H 1.08999 * 109.46965 * 59.99998 * 10 8 7 33 33 H 1.08995 * 109.47454 * 180.02562 * 10 8 7 34 34 H 1.08997 * 109.47353 * 305.00315 * 11 8 7 35 35 H 1.09004 * 109.47217 * 65.00175 * 11 8 7 36 36 H 0.96997 * 120.00018 * 179.97438 * 15 14 12 37 37 H 1.08001 * 119.61156 * 179.71579 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 1.3050 2.3568 -0.0005 5 6 1.9668 3.6017 0.0000 6 7 1.2707 4.7221 -0.0010 7 6 1.9556 6.0101 0.1339 8 6 1.4617 6.7207 1.3957 9 1 1.5942 6.0657 2.2569 10 6 -0.0208 7.0649 1.2400 11 6 2.2647 8.0062 1.6044 12 6 1.8639 8.6424 2.9103 13 1 1.1114 8.1767 3.5294 14 6 2.4578 9.8191 3.3149 15 7 3.3739 10.3865 2.5609 16 14 1.9604 10.6081 4.9335 17 1 2.8237 10.0874 6.0238 18 1 2.1206 12.0812 4.8359 19 1 0.5416 10.2827 5.2274 20 7 3.3410 3.6426 0.0016 21 1 3.7975 4.4984 0.0016 22 6 4.0672 2.4875 0.0022 23 6 3.4542 1.2873 0.0016 24 35 4.4865 -0.2971 0.0016 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.2258 2.3119 -0.0005 29 1 3.0304 5.8441 0.2074 30 1 1.7422 6.6281 -0.7383 31 1 -0.1532 7.7198 0.3787 32 1 -0.5928 6.1491 1.0913 33 1 -0.3725 7.5715 2.1387 34 1 3.3286 7.7705 1.6265 35 1 2.0627 8.6977 0.7863 36 1 3.7914 11.2145 2.8453 37 1 5.1462 2.5354 -0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602577706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:52 Heat of formation + Delta-G solvation = 10.773188 kcal Electronic energy + Delta-G solvation = -19513.048167 eV Core-core repulsion = 16337.561405 eV Total energy + Delta-G solvation = -3175.486762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89018 -38.88736 -36.22557 -34.12050 -32.63045 -32.19954 -31.00229 -28.70084 -27.84692 -26.79834 -25.74541 -23.47660 -22.98031 -21.49426 -19.05299 -18.66715 -17.72988 -17.46488 -16.25499 -16.09479 -15.46793 -14.88742 -14.58289 -14.40946 -14.19053 -13.78247 -13.12314 -12.89445 -12.61873 -12.24243 -12.19303 -11.85359 -11.55578 -11.41180 -11.32187 -10.89048 -10.81073 -10.59387 -10.39862 -10.29869 -10.05523 -9.71336 -9.35715 -9.22747 -9.01582 -8.92486 -8.35125 -7.21326 -5.99961 -4.01051 0.78534 1.44232 1.63049 2.89625 2.95116 3.31673 3.37943 3.41594 3.44097 4.30456 4.45409 4.55561 4.86553 4.93242 4.98203 5.07116 5.31283 5.35709 5.42395 5.61693 5.69352 5.90382 5.99164 6.09707 6.43285 6.48028 6.59918 6.73459 6.89596 7.02735 7.10741 7.20496 7.25695 7.64638 7.81345 7.99646 8.26423 8.45549 9.04960 9.62472 11.11480 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.002649 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.167508 B =10565.499646 C =11237.917661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.300 6.300 3 C 0.207 3.793 4 C -0.254 4.254 5 C 0.397 3.603 6 N -0.577 5.577 7 C 0.057 3.943 8 C -0.075 4.075 9 H 0.051 0.949 10 C -0.122 4.122 11 C 0.027 3.973 12 C -0.512 4.512 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.635 5.635 21 H 0.422 0.578 22 C 0.210 3.790 23 C -0.222 4.222 24 Br -0.028 7.028 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.153 0.847 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.010 0.990 35 H 0.017 0.983 36 H 0.260 0.740 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -24.823 -8.199 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.210 6.210 3 C 0.154 3.846 4 C -0.279 4.279 5 C 0.131 3.869 6 N -0.303 5.303 7 C -0.073 4.073 8 C -0.094 4.094 9 H 0.070 0.930 10 C -0.179 4.179 11 C -0.010 4.010 12 C -0.551 4.551 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.256 5.256 21 H 0.264 0.736 22 C 0.075 3.925 23 C -0.311 4.311 24 Br 0.055 6.945 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.171 0.829 29 H 0.038 0.962 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.136 -24.966 -8.268 26.324 hybrid contribution 0.498 1.474 0.958 1.827 sum 1.634 -23.493 -7.310 24.658 Atomic orbital electron populations 1.23174 0.77516 1.04159 1.02245 1.86043 1.21961 1.25975 1.87069 1.18285 0.90056 0.84940 0.91336 1.20423 1.00589 0.87871 1.18997 1.19737 0.78198 0.95153 0.93824 1.73524 1.32335 0.97068 1.27328 1.22117 0.94329 0.90344 1.00534 1.21194 0.96651 0.97907 0.93615 0.93017 1.21561 0.95804 0.99497 1.01045 1.19150 0.94267 0.90585 0.97015 1.21227 1.21739 1.07179 1.04913 0.92564 1.25020 0.95181 0.97197 0.97127 1.69963 1.26992 1.19213 1.37579 0.86618 0.79010 0.78471 0.84079 1.20742 1.21249 1.19838 1.43386 1.07804 1.08770 1.65674 0.73606 1.21647 0.97712 0.84474 0.88675 1.19970 0.91625 0.92436 1.27108 1.96657 1.68408 1.30982 1.98427 0.91943 0.92029 0.87972 0.82915 0.96191 0.90819 0.94141 0.93916 0.92670 0.97138 0.96473 0.93085 0.81008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.14 9.88 -18.33 -0.18 -3.33 16 3 C 0.21 2.41 6.69 -39.03 -0.26 2.14 16 4 C -0.25 -3.24 8.99 -39.11 -0.35 -3.59 16 5 C 0.40 5.76 7.46 -156.20 -1.17 4.59 16 6 N -0.58 -9.95 10.03 -60.41 -0.61 -10.56 16 7 C 0.06 1.04 5.72 -4.04 -0.02 1.01 16 8 C -0.07 -1.61 2.54 -90.62 -0.23 -1.84 16 9 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 10 C -0.12 -2.53 8.89 37.16 0.33 -2.20 16 11 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 12 C -0.51 -14.53 8.41 -34.44 -0.29 -14.82 16 13 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 16 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 N -0.63 -7.43 5.27 -12.23 -0.06 -7.50 16 21 H 0.42 4.67 6.21 -40.82 -0.25 4.42 16 22 C 0.21 1.97 10.88 -16.73 -0.18 1.79 16 23 C -0.22 -2.37 6.20 -39.69 -0.25 -2.61 16 24 Br -0.03 -0.26 33.18 -68.01 -2.26 -2.52 16 25 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.15 1.80 6.29 -52.48 -0.33 1.47 16 29 H 0.02 0.33 5.42 -51.93 -0.28 0.05 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 33 H 0.05 1.20 6.95 -51.93 -0.36 0.84 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -32.70 328.22 -8.98 -41.68 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.89 Total: -1.03 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -1.65 Total: -12.29 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.07 Total: -44.28 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.18 Total: -3.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.26 Total: -2.52 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.70 -8.98 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.452 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds