Wall clock time and date at job start Tue Mar 31 2020 15:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35546 * 117.00344 * 2 1 4 4 C 1.36652 * 120.23546 * 359.97438 * 3 2 1 5 5 C 1.40986 * 119.24096 * 179.97438 * 4 3 2 6 6 N 1.31898 * 120.14905 * 179.97438 * 5 4 3 7 7 C 1.46504 * 120.00154 * 173.92538 * 6 5 4 8 8 C 1.53000 * 109.47117 * 240.86545 * 7 6 5 9 9 H 1.09005 * 109.46986 * 55.00111 * 8 7 6 10 10 C 1.52996 * 109.47307 * 294.99940 * 8 7 6 11 11 C 1.52999 * 109.47011 * 174.99659 * 8 7 6 12 12 C 1.50694 * 109.47058 * 185.00131 * 11 8 7 13 13 H 1.08000 * 120.00461 * 359.97438 * 12 11 8 14 14 C 1.37880 * 120.00002 * 179.97438 * 12 11 8 15 15 N 1.31520 * 120.00082 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00075 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46759 * 90.00158 * 16 14 12 18 18 H 1.48502 * 109.47078 * 210.00364 * 16 14 12 19 19 H 1.48500 * 109.47009 * 330.00356 * 16 14 12 20 20 N 1.37481 * 119.70082 * 359.97438 * 5 4 3 21 21 H 0.96998 * 119.77427 * 179.97438 * 20 5 4 22 22 C 1.36443 * 120.45564 * 0.02562 * 20 5 4 23 23 C 1.34769 * 120.78512 * 359.97438 * 22 20 5 24 24 Br 1.89097 * 119.85684 * 179.97438 * 23 22 20 25 25 H 1.09000 * 109.46762 * 300.00342 * 1 2 3 26 26 H 1.08996 * 109.46989 * 59.99831 * 1 2 3 27 27 H 1.08995 * 109.47710 * 180.02562 * 1 2 3 28 28 H 1.08008 * 120.37756 * 0.02562 * 4 3 2 29 29 H 1.09006 * 109.46643 * 0.86510 * 7 6 5 30 30 H 1.08995 * 109.46921 * 120.86141 * 7 6 5 31 31 H 1.09005 * 109.46781 * 300.00294 * 10 8 7 32 32 H 1.08999 * 109.46965 * 59.99998 * 10 8 7 33 33 H 1.08995 * 109.47454 * 180.02562 * 10 8 7 34 34 H 1.08997 * 109.47353 * 305.00315 * 11 8 7 35 35 H 1.09004 * 109.47217 * 65.00175 * 11 8 7 36 36 H 0.96997 * 120.00018 * 179.97438 * 15 14 12 37 37 H 1.08001 * 119.61156 * 179.71579 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 1.3050 2.3568 -0.0005 5 6 1.9668 3.6017 0.0000 6 7 1.2707 4.7221 -0.0010 7 6 1.9556 6.0101 0.1339 8 6 1.4617 6.7207 1.3957 9 1 1.5942 6.0657 2.2569 10 6 -0.0208 7.0649 1.2400 11 6 2.2647 8.0062 1.6044 12 6 1.8639 8.6424 2.9103 13 1 1.1114 8.1767 3.5294 14 6 2.4578 9.8191 3.3149 15 7 3.3739 10.3865 2.5609 16 14 1.9604 10.6081 4.9335 17 1 2.8237 10.0874 6.0238 18 1 2.1206 12.0812 4.8359 19 1 0.5416 10.2827 5.2274 20 7 3.3410 3.6426 0.0016 21 1 3.7975 4.4984 0.0016 22 6 4.0672 2.4875 0.0022 23 6 3.4542 1.2873 0.0016 24 35 4.4865 -0.2971 0.0016 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.2258 2.3119 -0.0005 29 1 3.0304 5.8441 0.2074 30 1 1.7422 6.6281 -0.7383 31 1 -0.1532 7.7198 0.3787 32 1 -0.5928 6.1491 1.0913 33 1 -0.3725 7.5715 2.1387 34 1 3.3286 7.7705 1.6265 35 1 2.0627 8.6977 0.7863 36 1 3.7914 11.2145 2.8453 37 1 5.1462 2.5354 -0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602577706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:51 Heat of formation + Delta-G solvation = -9.777390 kcal Electronic energy + Delta-G solvation = -19513.939307 eV Core-core repulsion = 16337.561405 eV Total energy + Delta-G solvation = -3176.377902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83295 -39.78467 -37.75172 -35.54508 -34.17368 -33.47337 -32.07340 -29.81970 -28.76404 -28.47459 -27.12849 -25.14864 -23.99669 -22.74996 -20.75330 -19.63177 -18.72084 -18.58051 -18.15780 -16.88731 -16.66365 -16.36184 -15.82702 -15.66310 -15.39219 -14.89383 -14.67886 -14.29210 -13.88713 -13.61301 -13.40258 -13.28408 -12.85357 -12.81063 -12.67747 -12.40449 -12.29586 -12.18954 -12.07896 -11.63115 -11.29082 -11.19491 -11.17691 -10.85629 -10.55664 -10.25799 -10.06867 -8.31605 -8.17990 -6.29072 -0.09068 0.61062 0.64334 1.38422 1.39407 1.50692 1.99538 2.14252 2.39068 2.43883 3.13126 3.39674 3.62751 4.00951 4.06626 4.23346 4.25616 4.32216 4.43299 4.45785 4.59979 4.67387 4.80302 4.84198 4.86959 4.99510 5.09657 5.23297 5.39310 5.42000 5.52413 5.59066 5.76124 5.84614 5.99649 6.20572 6.27535 6.84996 7.14077 7.39004 8.91829 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.002649 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.167508 B =10565.499646 C =11237.917661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.306 6.306 3 C 0.224 3.776 4 C -0.282 4.282 5 C 0.406 3.594 6 N -0.621 5.621 7 C 0.070 3.930 8 C -0.066 4.066 9 H 0.039 0.961 10 C -0.112 4.112 11 C 0.035 3.965 12 C -0.532 4.532 13 H 0.056 0.944 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.266 1.266 20 N -0.633 5.633 21 H 0.426 0.574 22 C 0.221 3.779 23 C -0.239 4.239 24 Br -0.013 7.013 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.157 0.843 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.039 0.961 34 H -0.008 1.008 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -26.571 -7.732 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.216 6.216 3 C 0.169 3.831 4 C -0.307 4.307 5 C 0.142 3.858 6 N -0.350 5.350 7 C -0.061 4.061 8 C -0.085 4.085 9 H 0.058 0.942 10 C -0.169 4.169 11 C -0.002 4.002 12 C -0.570 4.570 13 H 0.074 0.926 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.191 1.191 20 N -0.254 5.254 21 H 0.268 0.732 22 C 0.087 3.913 23 C -0.327 4.327 24 Br 0.070 6.930 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.146 0.854 28 H 0.174 0.826 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.010 0.990 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.432 -26.762 -7.806 27.914 hybrid contribution 0.485 1.772 0.771 1.993 sum 1.917 -24.990 -7.035 26.032 Atomic orbital electron populations 1.23455 0.75723 1.06012 1.02620 1.86052 1.23831 1.25356 1.86396 1.18467 0.90593 0.85030 0.88992 1.20424 1.01048 0.87583 1.21614 1.19985 0.79249 0.95041 0.91535 1.73507 1.32569 0.96766 1.32119 1.21760 0.95004 0.91257 0.98055 1.20995 0.96521 0.95846 0.95175 0.94207 1.21445 0.95456 0.99905 1.00079 1.19010 0.93761 0.92102 0.95343 1.21594 1.21800 1.07729 1.05875 0.92617 1.25911 0.95069 0.97775 1.00886 1.70083 1.28009 1.19719 1.39484 0.85525 0.78990 0.77498 0.79536 1.19755 1.20653 1.19056 1.43429 1.07195 1.09858 1.64909 0.73236 1.22249 0.99258 0.83206 0.86541 1.20239 0.91612 0.93526 1.27368 1.96679 1.67750 1.30167 1.98425 0.91790 0.91456 0.85413 0.82552 0.95032 0.91864 0.94327 0.92412 0.94235 0.98984 0.98917 0.92819 0.77100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.31 -5.81 9.88 -88.51 -0.87 -6.69 16 3 C 0.22 4.81 6.69 22.63 0.15 4.96 16 4 C -0.28 -6.91 8.99 22.57 0.20 -6.71 16 5 C 0.41 11.51 7.46 134.18 1.00 12.51 16 6 N -0.62 -21.46 10.03 -345.04 -3.46 -24.92 16 7 C 0.07 2.59 5.72 86.38 0.49 3.09 16 8 C -0.07 -2.93 2.54 -10.80 -0.03 -2.96 16 9 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 10 C -0.11 -4.72 8.89 71.98 0.64 -4.08 16 11 C 0.04 1.89 4.45 29.85 0.13 2.03 16 12 C -0.53 -30.74 8.41 25.60 0.22 -30.52 16 13 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16 14 C 0.00 0.06 5.46 84.65 0.46 0.53 16 15 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 16 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 N -0.63 -13.93 5.27 -192.62 -1.01 -14.95 16 21 H 0.43 8.93 6.21 -92.71 -0.58 8.36 16 22 C 0.22 3.61 10.88 83.18 0.90 4.52 16 23 C -0.24 -4.54 6.20 22.20 0.14 -4.41 16 24 Br -0.01 -0.22 33.18 -20.37 -0.68 -0.90 16 25 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 26 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 27 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.16 3.61 6.29 -2.91 -0.02 3.59 16 29 H 0.03 1.06 5.42 -2.38 -0.01 1.04 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.06 2.25 7.75 -2.39 -0.02 2.23 16 33 H 0.04 1.74 6.95 -2.39 -0.02 1.73 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -70.71 328.22 2.22 -68.48 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.51 Total: 8.33 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 5.43 Total: -19.74 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -4.19 Total: -96.40 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.87 Total: -6.69 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.68 Total: -0.90 kcal Total: -70.71 2.22 -68.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.707 kcal (2) G-P(sol) polarization free energy of solvation -70.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds