Wall clock time and date at job start Tue Mar 31 2020 15:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86803 * 119.99808 * 2 1 4 4 H 1.48503 * 109.47274 * 84.66829 * 3 2 1 5 5 H 1.48498 * 109.46974 * 204.66582 * 3 2 1 6 6 H 1.48498 * 109.46919 * 324.66562 * 3 2 1 7 7 C 1.39027 * 120.00284 * 179.71954 * 2 1 3 8 8 H 1.07997 * 119.99854 * 20.06244 * 7 2 1 9 9 N 1.36870 * 120.00038 * 200.06427 * 7 2 1 10 10 C 1.38252 * 125.62044 * 223.27786 * 9 7 2 11 11 C 1.46721 * 125.44845 * 359.97438 * 10 9 7 12 12 O 1.21587 * 120.00241 * 185.03495 * 11 10 9 13 13 O 1.34868 * 119.99526 * 5.03183 * 11 10 9 14 14 C 1.45206 * 116.99765 * 184.70961 * 13 11 10 15 15 C 1.50697 * 109.47093 * 184.75909 * 14 13 11 16 16 C 1.33645 * 122.75017 * 4.74278 * 15 14 13 17 17 S 1.76193 * 107.92299 * 180.02562 * 16 15 14 18 18 C 1.70974 * 90.28564 * 0.02562 * 17 16 15 19 19 N 1.29031 * 110.16341 * 359.73122 * 18 17 16 20 20 C 1.36208 * 109.10687 * 179.82355 * 10 9 7 21 21 C 1.41662 * 107.74042 * 0.42993 * 20 10 9 22 22 C 1.40043 * 133.33830 * 179.81402 * 21 20 10 23 23 C 1.36565 * 119.83189 * 179.97438 * 22 21 20 24 24 C 1.38867 * 120.60156 * 359.94734 * 23 22 21 25 25 C 1.37841 * 120.63415 * 0.02562 * 24 23 22 26 26 C 1.37821 * 125.62568 * 43.57411 * 9 7 2 27 27 H 0.96996 * 120.00808 * 354.99307 * 1 2 3 28 28 H 1.09001 * 109.46736 * 304.75885 * 14 13 11 29 29 H 1.08996 * 109.47072 * 64.75545 * 14 13 11 30 30 H 1.07995 * 126.03475 * 0.02562 * 16 15 14 31 31 H 1.07997 * 124.91942 * 180.02562 * 18 17 16 32 32 H 1.08004 * 126.13172 * 180.16770 * 20 10 9 33 33 H 1.08002 * 120.08443 * 359.95547 * 22 21 20 34 34 H 1.07994 * 119.70306 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.68394 * 180.02562 * 24 23 22 36 36 H 1.08004 * 120.09222 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.3822 2.1116 1.3940 5 1 3.5967 1.4103 -0.5843 6 1 1.5056 2.6175 -0.8097 7 6 2.0086 -1.2040 0.0059 8 1 1.5177 -2.1124 -0.3105 9 7 3.3150 -1.2379 0.4127 10 6 4.3339 -1.9357 -0.2087 11 6 4.1888 -2.7614 -1.4128 12 8 5.1332 -3.4068 -1.8249 13 8 3.0076 -2.8044 -2.0624 14 6 2.9048 -3.7219 -3.1832 15 6 1.5657 -3.5493 -3.8524 16 6 0.6918 -2.6060 -3.4885 17 16 -0.7292 -2.7566 -4.5192 18 6 -0.0074 -4.0735 -5.3365 19 7 1.1622 -4.3136 -4.8472 20 6 5.4949 -1.7314 0.4737 21 6 5.2068 -0.8839 1.5717 22 6 5.9885 -0.3461 2.6018 23 6 5.4125 0.4604 3.5414 24 6 4.0565 0.7543 3.4854 25 6 3.2666 0.2374 2.4809 26 6 3.8304 -0.5867 1.5126 27 1 -0.4851 0.8367 0.0733 28 1 3.6989 -3.5108 -3.8994 29 1 3.0023 -4.7464 -2.8242 30 1 0.8319 -1.8797 -2.7016 31 1 -0.4623 -4.6217 -6.1483 32 1 6.4611 -2.1451 0.2250 33 1 7.0440 -0.5688 2.6531 34 1 6.0172 0.8736 4.3351 35 1 3.6165 1.3941 4.2360 36 1 2.2130 0.4721 2.4455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729767482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:41 Heat of formation + Delta-G solvation = 34.716679 kcal Electronic energy + Delta-G solvation = -24946.784105 eV Core-core repulsion = 21296.115922 eV Total energy + Delta-G solvation = -3650.668183 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91516 -39.96033 -39.16700 -36.34478 -35.96943 -33.66595 -31.48919 -31.16269 -29.41679 -28.63238 -27.19444 -25.02192 -24.86196 -23.37946 -21.24810 -20.77215 -19.47104 -19.36435 -18.50943 -17.89534 -17.21605 -16.24800 -16.17066 -15.78957 -15.28154 -15.17144 -14.61894 -14.41676 -13.93813 -13.82545 -13.42503 -13.15056 -13.09358 -12.89268 -12.72793 -12.53200 -12.26606 -12.12034 -11.50813 -11.20791 -11.08685 -11.02426 -10.62027 -10.49037 -10.33208 -10.21206 -9.97006 -9.65211 -9.56403 -9.33482 -8.79554 -8.70950 -7.50744 -7.11555 -6.98221 -4.64578 0.86344 1.35656 1.50483 1.86160 2.38012 2.57705 2.80557 2.90795 2.93858 3.04942 3.14887 3.79279 3.80875 3.99066 4.38337 4.49525 4.69261 5.04793 5.31863 5.38153 5.48982 5.51761 5.63417 5.67394 5.78391 5.88421 6.07597 6.13236 6.22471 6.28952 6.48366 6.64879 6.72607 6.78161 7.08244 7.16056 7.25663 7.47365 7.50551 7.72467 7.75172 8.03439 8.29126 8.58645 8.90491 10.01405 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.004467 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.278079 B = 6266.466280 C = 7678.005432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.085 3.915 3 Si 0.865 3.135 4 H -0.245 1.245 5 H -0.254 1.254 6 H -0.280 1.280 7 C -0.342 4.342 8 H 0.129 0.871 9 N -0.257 5.257 10 C -0.013 4.013 11 C 0.549 3.451 12 O -0.519 6.519 13 O -0.328 6.328 14 C 0.146 3.854 15 C 0.041 3.959 16 C -0.202 4.202 17 S 0.121 5.879 18 C 0.007 3.993 19 N -0.463 5.463 20 C -0.151 4.151 21 C -0.126 4.126 22 C -0.075 4.075 23 C -0.157 4.157 24 C -0.130 4.130 25 C -0.098 4.098 26 C 0.059 3.941 27 H 0.288 0.712 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.199 0.801 31 H 0.199 0.801 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -1.179 -3.798 3.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.130 4.130 3 Si 0.689 3.311 4 H -0.169 1.169 5 H -0.178 1.178 6 H -0.206 1.206 7 C -0.469 4.469 8 H 0.146 0.854 9 N 0.080 4.920 10 C -0.125 4.125 11 C 0.397 3.603 12 O -0.409 6.409 13 O -0.243 6.243 14 C 0.069 3.931 15 C -0.089 4.089 16 C -0.341 4.341 17 S 0.373 5.627 18 C -0.291 4.291 19 N -0.178 5.178 20 C -0.178 4.178 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.176 4.176 24 C -0.151 4.151 25 C -0.117 4.117 26 C -0.056 4.056 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.216 0.784 31 H 0.216 0.784 32 H 0.158 0.842 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.313 -1.231 -4.560 4.903 hybrid contribution 0.880 0.596 0.160 1.074 sum -0.433 -0.636 -4.401 4.467 Atomic orbital electron populations 1.69628 1.06435 1.29964 1.38908 1.25460 0.95342 0.99231 0.92965 0.87001 0.81326 0.82040 0.80733 1.16922 1.17765 1.20594 1.19467 0.82743 0.97878 1.46815 0.85358 1.40366 1.06421 1.30382 1.14848 1.19140 0.89308 1.07852 0.96217 1.19930 0.79982 0.78629 0.81809 1.90819 1.40248 1.43309 1.66544 1.86791 1.36271 1.58724 1.42543 1.20825 0.92053 0.93191 0.87044 1.19696 0.98117 0.94943 0.96150 1.27268 0.95312 1.05627 1.05850 1.84099 1.20713 1.30009 1.27919 1.28238 0.94190 1.01488 1.05196 1.65854 1.14120 1.27410 1.10433 1.20415 0.96218 1.03928 0.97223 1.17921 0.93089 1.03471 0.98588 1.20170 0.98281 0.97344 0.93619 1.20377 0.95008 1.02073 1.00137 1.20605 0.93945 1.01954 0.98560 1.20209 0.99851 0.97674 0.94014 1.18382 0.93404 1.02622 0.91172 0.90092 0.89435 0.89515 0.78420 0.78433 0.84154 0.86982 0.87138 0.86853 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.98 13.95 55.50 0.77 -19.21 16 2 C 0.08 2.04 4.89 -17.47 -0.09 1.96 16 3 Si 0.87 19.34 24.44 -169.99 -4.15 15.19 16 4 H -0.24 -5.20 5.67 56.52 0.32 -4.88 16 5 H -0.25 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.34 -8.40 8.99 -15.01 -0.13 -8.54 16 8 H 0.13 3.31 7.29 -52.49 -0.38 2.92 16 9 N -0.26 -6.13 2.39 -56.10 -0.13 -6.26 16 10 C -0.01 -0.28 6.76 -82.27 -0.56 -0.84 16 11 C 0.55 11.80 7.90 34.16 0.27 12.07 16 12 O -0.52 -11.26 16.55 -19.33 -0.32 -11.58 16 13 O -0.33 -6.63 7.08 -40.95 -0.29 -6.92 16 14 C 0.15 2.51 6.18 36.00 0.22 2.73 16 15 C 0.04 0.69 6.73 -84.23 -0.57 0.12 16 16 C -0.20 -3.38 10.57 29.12 0.31 -3.08 16 17 S 0.12 1.57 23.22 -107.50 -2.50 -0.93 16 18 C 0.01 0.09 12.23 51.59 0.63 0.72 16 19 N -0.46 -7.11 10.53 -11.90 -0.13 -7.24 16 20 C -0.15 -3.18 10.55 -39.01 -0.41 -3.59 16 21 C -0.13 -2.66 6.16 -106.89 -0.66 -3.32 16 22 C -0.08 -1.35 10.06 -39.51 -0.40 -1.75 16 23 C -0.16 -2.63 9.97 -39.95 -0.40 -3.03 16 24 C -0.13 -2.35 10.02 -39.49 -0.40 -2.75 16 25 C -0.10 -2.08 6.86 -39.41 -0.27 -2.35 16 26 C 0.06 1.34 5.17 -83.84 -0.43 0.91 16 27 H 0.29 6.50 8.31 -40.82 -0.34 6.16 16 28 H 0.09 1.44 7.98 -51.93 -0.41 1.02 16 29 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.20 3.80 7.57 -52.49 -0.40 3.40 16 31 H 0.20 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.14 2.62 8.06 -52.48 -0.42 2.20 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.12 2.57 5.99 -52.48 -0.31 2.26 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -27.36 326.66 -7.96 -35.32 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -3.26 Total: 7.44 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.88 Total: -10.72 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.51 Total: -32.71 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.61 Total: -18.50 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.15 Total: 15.19 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.50 Total: -0.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.36 -7.96 -35.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729767482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.037 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds