Wall clock time and date at job start Tue Mar 31 2020 15:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86803 * 119.99808 * 2 1 4 4 H 1.48503 * 109.47274 * 84.66829 * 3 2 1 5 5 H 1.48498 * 109.46974 * 204.66582 * 3 2 1 6 6 H 1.48498 * 109.46919 * 324.66562 * 3 2 1 7 7 C 1.39027 * 120.00284 * 179.71954 * 2 1 3 8 8 H 1.07997 * 119.99854 * 20.06244 * 7 2 1 9 9 N 1.36870 * 120.00038 * 200.06427 * 7 2 1 10 10 C 1.38252 * 125.62044 * 223.27786 * 9 7 2 11 11 C 1.46721 * 125.44845 * 359.97438 * 10 9 7 12 12 O 1.21587 * 120.00241 * 185.03495 * 11 10 9 13 13 O 1.34868 * 119.99526 * 5.03183 * 11 10 9 14 14 C 1.45206 * 116.99765 * 184.70961 * 13 11 10 15 15 C 1.50697 * 109.47093 * 184.75909 * 14 13 11 16 16 C 1.33645 * 122.75017 * 4.74278 * 15 14 13 17 17 S 1.76193 * 107.92299 * 180.02562 * 16 15 14 18 18 C 1.70974 * 90.28564 * 0.02562 * 17 16 15 19 19 N 1.29031 * 110.16341 * 359.73122 * 18 17 16 20 20 C 1.36208 * 109.10687 * 179.82355 * 10 9 7 21 21 C 1.41662 * 107.74042 * 0.42993 * 20 10 9 22 22 C 1.40043 * 133.33830 * 179.81402 * 21 20 10 23 23 C 1.36565 * 119.83189 * 179.97438 * 22 21 20 24 24 C 1.38867 * 120.60156 * 359.94734 * 23 22 21 25 25 C 1.37841 * 120.63415 * 0.02562 * 24 23 22 26 26 C 1.37821 * 125.62568 * 43.57411 * 9 7 2 27 27 H 0.96996 * 120.00808 * 354.99307 * 1 2 3 28 28 H 1.09001 * 109.46736 * 304.75885 * 14 13 11 29 29 H 1.08996 * 109.47072 * 64.75545 * 14 13 11 30 30 H 1.07995 * 126.03475 * 0.02562 * 16 15 14 31 31 H 1.07997 * 124.91942 * 180.02562 * 18 17 16 32 32 H 1.08004 * 126.13172 * 180.16770 * 20 10 9 33 33 H 1.08002 * 120.08443 * 359.95547 * 22 21 20 34 34 H 1.07994 * 119.70306 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.68394 * 180.02562 * 24 23 22 36 36 H 1.08004 * 120.09222 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.3822 2.1116 1.3940 5 1 3.5967 1.4103 -0.5843 6 1 1.5056 2.6175 -0.8097 7 6 2.0086 -1.2040 0.0059 8 1 1.5177 -2.1124 -0.3105 9 7 3.3150 -1.2379 0.4127 10 6 4.3339 -1.9357 -0.2087 11 6 4.1888 -2.7614 -1.4128 12 8 5.1332 -3.4068 -1.8249 13 8 3.0076 -2.8044 -2.0624 14 6 2.9048 -3.7219 -3.1832 15 6 1.5657 -3.5493 -3.8524 16 6 0.6918 -2.6060 -3.4885 17 16 -0.7292 -2.7566 -4.5192 18 6 -0.0074 -4.0735 -5.3365 19 7 1.1622 -4.3136 -4.8472 20 6 5.4949 -1.7314 0.4737 21 6 5.2068 -0.8839 1.5717 22 6 5.9885 -0.3461 2.6018 23 6 5.4125 0.4604 3.5414 24 6 4.0565 0.7543 3.4854 25 6 3.2666 0.2374 2.4809 26 6 3.8304 -0.5867 1.5126 27 1 -0.4851 0.8367 0.0733 28 1 3.6989 -3.5108 -3.8994 29 1 3.0023 -4.7464 -2.8242 30 1 0.8319 -1.8797 -2.7016 31 1 -0.4623 -4.6217 -6.1483 32 1 6.4611 -2.1451 0.2250 33 1 7.0440 -0.5688 2.6531 34 1 6.0172 0.8736 4.3351 35 1 3.6165 1.3941 4.2360 36 1 2.2130 0.4721 2.4455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729767482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:40 Heat of formation + Delta-G solvation = 20.303571 kcal Electronic energy + Delta-G solvation = -24947.409105 eV Core-core repulsion = 21296.115922 eV Total energy + Delta-G solvation = -3651.293182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.54869 -41.37733 -40.57230 -37.86599 -37.59000 -35.42470 -33.15563 -32.44929 -30.94912 -30.19628 -28.54830 -26.74627 -26.16713 -24.82645 -22.83543 -22.31648 -21.07205 -20.66282 -20.17199 -19.21872 -18.72341 -17.84373 -17.69505 -17.41627 -16.75924 -16.46176 -16.25584 -15.90636 -15.44307 -15.26763 -14.98206 -14.77032 -14.59929 -14.21696 -14.13011 -14.07191 -13.83091 -13.67449 -13.20082 -12.80426 -12.51088 -12.41415 -12.31147 -12.06868 -11.96550 -11.88704 -11.53576 -11.31531 -10.77861 -10.50562 -10.45837 -9.86950 -9.10801 -8.83235 -8.69232 -6.49340 -0.28333 -0.24015 0.37948 0.72502 0.84932 0.98033 1.15079 1.23278 1.32062 1.40536 1.62424 1.99841 2.10408 2.34645 2.72229 3.12194 3.18368 3.81995 3.90354 3.99179 4.04113 4.11275 4.27894 4.34116 4.43299 4.52058 4.57112 4.63821 4.75366 4.95301 4.99526 5.08183 5.18224 5.24790 5.37930 5.66801 5.77020 5.81271 5.92614 6.07477 6.37448 6.55232 6.61612 6.82499 7.15878 8.24460 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.004467 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.278079 B = 6266.466280 C = 7678.005432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.224 1.224 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.351 4.351 8 H 0.100 0.900 9 N -0.282 5.282 10 C -0.041 4.041 11 C 0.549 3.451 12 O -0.527 6.527 13 O -0.337 6.337 14 C 0.143 3.857 15 C 0.039 3.961 16 C -0.244 4.244 17 S 0.169 5.831 18 C 0.030 3.970 19 N -0.488 5.488 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.070 4.070 23 C -0.150 4.150 24 C -0.108 4.108 25 C -0.141 4.141 26 C 0.043 3.957 27 H 0.293 0.707 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.164 0.836 31 H 0.247 0.753 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -0.542 -3.009 3.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.148 4.148 3 Si 0.729 3.271 4 H -0.148 1.148 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.478 4.478 8 H 0.117 0.883 9 N 0.052 4.948 10 C -0.152 4.152 11 C 0.396 3.604 12 O -0.418 6.418 13 O -0.253 6.253 14 C 0.066 3.934 15 C -0.092 4.092 16 C -0.384 4.384 17 S 0.422 5.578 18 C -0.267 4.267 19 N -0.204 5.204 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.089 4.089 23 C -0.169 4.169 24 C -0.128 4.128 25 C -0.160 4.160 26 C -0.071 4.071 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.182 0.818 31 H 0.263 0.737 32 H 0.181 0.819 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.064 -0.586 -3.762 3.808 hybrid contribution 0.602 0.343 -0.016 0.693 sum 0.538 -0.242 -3.778 3.824 Atomic orbital electron populations 1.69652 1.07054 1.30620 1.40954 1.25769 0.95657 1.00594 0.92766 0.86432 0.78889 0.80269 0.81477 1.14768 1.20753 1.20056 1.19138 0.83660 0.97138 1.47897 0.88267 1.40374 1.06172 1.32159 1.16060 1.19558 0.90137 1.08341 0.97195 1.19926 0.80185 0.78476 0.81794 1.90785 1.40409 1.43724 1.66859 1.86798 1.35745 1.59355 1.43374 1.20992 0.93169 0.92846 0.86360 1.19643 0.97704 0.95196 0.96617 1.27048 0.98269 1.06023 1.07024 1.83865 1.18045 1.29742 1.26143 1.29095 0.92797 1.00293 1.04563 1.65919 1.15737 1.27933 1.10789 1.20798 0.96472 1.02927 0.96536 1.18344 0.92852 1.04071 0.99692 1.20657 0.99866 0.96170 0.92182 1.20915 0.94677 1.00735 1.00566 1.21154 0.94521 0.99917 0.97178 1.20340 0.99902 1.00016 0.95790 1.18890 0.94489 1.02483 0.91189 0.89588 0.88847 0.88927 0.81832 0.73671 0.81878 0.83306 0.82428 0.83455 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.82 13.95 21.67 0.30 -43.52 16 2 C 0.06 3.25 4.89 84.96 0.42 3.67 16 3 Si 0.91 41.15 24.44 68.60 1.68 42.83 16 4 H -0.22 -9.32 5.67 99.48 0.56 -8.75 16 5 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.35 -18.54 8.99 84.10 0.76 -17.78 16 8 H 0.10 5.65 7.29 -2.91 -0.02 5.63 16 9 N -0.28 -14.11 2.39 -331.41 -0.79 -14.91 16 10 C -0.04 -1.93 6.76 39.88 0.27 -1.66 16 11 C 0.55 24.78 7.90 70.04 0.55 25.34 16 12 O -0.53 -23.46 16.55 19.55 0.32 -23.13 16 13 O -0.34 -14.74 7.08 -57.82 -0.41 -15.15 16 14 C 0.14 5.20 6.18 71.23 0.44 5.64 16 15 C 0.04 1.37 6.73 41.52 0.28 1.65 16 16 C -0.24 -8.74 10.57 66.78 0.71 -8.03 16 17 S 0.17 4.28 23.22 -56.49 -1.31 2.97 16 18 C 0.03 0.67 12.23 130.65 1.60 2.27 16 19 N -0.49 -14.72 10.53 -191.56 -2.02 -16.74 16 20 C -0.14 -5.86 10.55 22.64 0.24 -5.62 16 21 C -0.15 -5.94 6.16 -21.34 -0.13 -6.07 16 22 C -0.07 -2.23 10.06 22.32 0.22 -2.01 16 23 C -0.15 -4.27 9.97 22.03 0.22 -4.05 16 24 C -0.11 -3.50 10.02 22.33 0.22 -3.28 16 25 C -0.14 -5.86 6.86 22.38 0.15 -5.70 16 26 C 0.04 2.00 5.17 39.07 0.20 2.20 16 27 H 0.29 13.83 8.31 -92.71 -0.77 13.06 16 28 H 0.09 3.22 7.98 -2.39 -0.02 3.20 16 29 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.16 7.05 7.57 -2.91 -0.02 7.03 16 31 H 0.25 2.88 8.06 -2.91 -0.02 2.85 16 32 H 0.16 5.88 8.06 -2.91 -0.02 5.85 16 33 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.11 4.60 5.99 -2.91 -0.02 4.58 16 Total: -1.00 -63.52 326.66 4.91 -58.61 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.99 Total: 22.47 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 6.15 Total: -13.44 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -2.51 Total: -75.16 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.09 Total: -38.28 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.68 Total: 42.83 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.31 Total: 2.97 kcal Total: -63.52 4.91 -58.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729767482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.916 kcal (2) G-P(sol) polarization free energy of solvation -63.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds