Wall clock time and date at job start Tue Mar 31 2020 15:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00313 * 2 1 4 4 H 1.48499 * 109.46843 * 239.99746 * 3 2 1 5 5 H 1.48498 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47347 * 120.00003 * 3 2 1 7 7 C 1.38657 * 119.99342 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99443 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00467 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99810 * 185.05827 * 9 7 2 11 11 C 1.39065 * 119.98123 * 174.45587 * 10 9 7 12 12 C 1.38260 * 120.28777 * 180.02562 * 11 10 9 13 13 C 1.37952 * 120.25213 * 0.02562 * 12 11 10 14 14 C 1.39916 * 119.96219 * 359.97438 * 13 12 11 15 15 C 1.47122 * 120.14633 * 179.72552 * 14 13 12 16 16 C 1.35056 * 119.99529 * 0.02562 * 15 14 13 17 17 C 1.46244 * 119.99953 * 179.97438 * 16 15 14 18 18 O 1.21739 * 119.99941 * 359.97438 * 17 16 15 19 19 C 1.47838 * 120.00148 * 180.02562 * 17 16 15 20 20 C 1.39657 * 120.15627 * 359.71877 * 19 17 16 21 21 C 1.37883 * 119.85829 * 179.70332 * 20 19 17 22 22 C 1.38438 * 120.19003 * 0.59960 * 21 20 19 23 23 C 1.38298 * 120.31658 * 359.67853 * 22 21 20 24 24 C 1.38133 * 120.13002 * 0.02562 * 23 22 21 25 25 Cl 1.73608 * 120.09051 * 180.02562 * 24 23 22 26 26 C 1.38515 * 119.98581 * 354.47769 * 10 9 7 27 27 H 0.97000 * 119.99578 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.85459 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.86853 * 179.97438 * 12 11 10 30 30 H 1.08000 * 120.01753 * 180.02562 * 13 12 11 31 31 H 1.07997 * 119.99961 * 179.97438 * 15 14 13 32 32 H 1.07997 * 120.00514 * 359.97438 * 16 15 14 33 33 H 1.08004 * 120.06915 * 0.02562 * 20 19 17 34 34 H 1.08003 * 119.90278 * 180.27669 * 21 20 19 35 35 H 1.07996 * 119.84224 * 179.69912 * 22 21 20 36 36 H 1.07992 * 119.93066 * 180.02562 * 23 22 21 37 37 H 1.07992 * 120.12281 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6962 -1.2125 5 1 1.2847 2.7464 -0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0087 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3345 -2.3685 0.0005 10 6 2.0698 -3.5047 0.1077 11 6 1.4336 -4.7352 0.2303 12 6 2.1762 -5.8962 0.3404 13 6 3.5546 -5.8432 0.3301 14 6 4.2056 -4.6108 0.2073 15 6 5.6755 -4.5489 0.2019 16 6 6.3995 -5.6834 0.3151 17 6 7.8606 -5.6221 0.3092 18 8 8.4243 -4.5484 0.2018 19 6 8.6531 -6.8640 0.4326 20 6 8.0098 -8.0969 0.5609 21 6 8.7550 -9.2520 0.6694 22 6 10.1380 -9.1913 0.6639 23 6 10.7829 -7.9738 0.5431 24 6 10.0494 -6.8091 0.4275 25 17 10.8600 -5.2814 0.2752 26 6 3.4533 -3.4377 0.0954 27 1 -0.4849 0.8401 -0.0004 28 1 0.3547 -4.7840 0.2403 29 1 1.6751 -6.8482 0.4357 30 1 4.1310 -6.7525 0.4159 31 1 6.1756 -3.5964 0.1066 32 1 5.8995 -6.6359 0.4100 33 1 6.9310 -8.1460 0.5698 34 1 8.2582 -10.2063 0.7641 35 1 10.7161 -10.0990 0.7541 36 1 11.8621 -7.9338 0.5392 37 1 3.9488 -2.4829 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730146823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:34 Heat of formation + Delta-G solvation = 6.217463 kcal Electronic energy + Delta-G solvation = -22991.875655 eV Core-core repulsion = 19305.635196 eV Total energy + Delta-G solvation = -3686.240459 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20808 -39.16417 -38.35966 -36.76760 -36.56885 -33.61679 -32.29712 -31.89111 -31.04815 -29.75487 -28.66498 -25.61387 -25.05766 -23.44289 -22.55202 -21.77880 -20.68373 -18.97949 -17.99730 -17.76747 -16.91929 -16.24409 -15.95368 -15.29018 -15.08904 -14.72810 -14.70947 -14.43159 -14.30495 -14.03749 -13.75350 -13.64411 -13.25604 -12.91998 -12.48084 -12.28262 -12.17437 -11.76358 -11.74824 -11.73042 -11.59314 -11.29518 -11.02678 -10.88015 -10.72917 -10.48449 -9.86351 -9.57713 -9.44175 -9.43534 -9.09466 -8.88439 -7.95433 -7.36896 -6.50991 -4.11064 0.16950 0.80931 0.98089 1.92222 2.16641 2.34211 2.99897 3.12025 3.13485 3.15303 3.55549 3.84999 3.92673 4.33456 4.49209 4.51546 4.72574 4.87985 4.99620 5.02768 5.08597 5.15179 5.19147 5.39831 5.45502 5.60690 5.70056 5.77671 5.79254 5.93539 5.96351 6.04302 6.28835 6.30712 6.42239 6.60300 6.68669 6.95736 7.07512 7.19557 7.29389 7.56625 7.62245 7.92193 8.94207 9.60792 10.66447 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.002532 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.896387 B =11053.883223 C =12738.465190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.396 4.396 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.146 3.854 11 C -0.172 4.172 12 C -0.083 4.083 13 C -0.185 4.185 14 C -0.052 4.052 15 C 0.020 3.980 16 C -0.264 4.264 17 C 0.417 3.583 18 O -0.443 6.443 19 C -0.147 4.147 20 C -0.062 4.062 21 C -0.130 4.130 22 C -0.084 4.084 23 C -0.127 4.127 24 C 0.008 3.992 25 Cl -0.037 7.037 26 C -0.200 4.200 27 H 0.272 0.728 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.585 -18.196 1.470 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.092 3.908 11 C -0.192 4.192 12 C -0.102 4.102 13 C -0.203 4.203 14 C -0.052 4.052 15 C 0.002 3.998 16 C -0.282 4.282 17 C 0.298 3.702 18 O -0.321 6.321 19 C -0.148 4.148 20 C -0.080 4.080 21 C -0.148 4.148 22 C -0.102 4.102 23 C -0.146 4.146 24 C -0.019 4.019 25 Cl -0.007 7.007 26 C -0.219 4.219 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.509 -17.253 1.376 24.619 hybrid contribution 0.531 0.754 0.005 0.922 sum 18.040 -16.499 1.381 24.486 Atomic orbital electron populations 1.70025 1.05981 1.27946 1.45527 1.25288 0.95853 0.98865 0.96305 0.85786 0.78752 0.79641 0.79362 1.19380 1.20198 1.19372 1.21277 0.91782 0.80760 1.53362 0.89068 1.83998 1.34127 1.11363 1.78262 1.19264 0.90024 0.88372 0.93161 1.20437 0.99907 0.90326 1.08509 1.20596 0.93505 0.96940 0.99124 1.20820 0.94329 0.96027 1.09159 1.18689 0.91193 0.93659 1.01679 1.22736 0.92755 0.98543 0.85806 1.23173 0.93410 1.00036 1.11590 1.20295 0.89287 0.87233 0.73417 1.90734 1.73893 1.31030 1.36405 1.20429 0.92362 0.96292 1.05756 1.21512 1.00926 0.90680 0.94879 1.21271 0.94040 0.98802 1.00727 1.21346 0.94821 0.97370 0.96657 1.21094 1.00608 0.90858 1.02041 1.21240 0.92063 0.88529 1.00102 1.98423 1.78307 1.28649 1.95344 1.21434 0.93800 0.98127 1.08535 0.91850 0.86189 0.86536 0.86978 0.85242 0.84955 0.83946 0.84736 0.84754 0.84523 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 2 C 0.04 1.13 5.49 -17.51 -0.10 1.04 16 3 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.40 -10.84 9.48 30.89 0.29 -10.55 16 8 H 0.09 2.31 5.20 -52.48 -0.27 2.03 16 9 O -0.17 -4.83 9.76 0.04 0.00 -4.83 16 10 C 0.15 3.38 6.64 -39.17 -0.26 3.12 16 11 C -0.17 -3.42 9.99 -39.27 -0.39 -3.82 16 12 C -0.08 -1.36 10.02 -39.68 -0.40 -1.76 16 13 C -0.18 -2.91 9.41 -39.06 -0.37 -3.28 16 14 C -0.05 -0.92 5.87 -105.08 -0.62 -1.53 16 15 C 0.02 0.31 9.46 -37.11 -0.35 -0.04 16 16 C -0.26 -3.47 8.90 -37.50 -0.33 -3.80 16 17 C 0.42 5.75 7.06 -32.44 -0.23 5.53 16 18 O -0.44 -7.30 13.86 5.15 0.07 -7.22 16 19 C -0.15 -1.68 5.88 -104.88 -0.62 -2.30 16 20 C -0.06 -0.53 9.45 -39.18 -0.37 -0.90 16 21 C -0.13 -0.87 10.03 -39.64 -0.40 -1.26 16 22 C -0.08 -0.54 10.04 -39.49 -0.40 -0.94 16 23 C -0.13 -1.05 9.82 -39.60 -0.39 -1.44 16 24 C 0.01 0.09 6.35 -39.06 -0.25 -0.16 16 25 Cl -0.04 -0.46 26.02 -51.86 -1.35 -1.81 16 26 C -0.20 -4.19 8.91 -38.89 -0.35 -4.54 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 29 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.11 1.39 6.16 -52.49 -0.32 1.07 16 31 H 0.13 2.05 7.52 -52.49 -0.39 1.65 16 32 H 0.13 1.40 4.34 -52.49 -0.23 1.17 16 33 H 0.14 0.96 6.23 -52.48 -0.33 0.63 16 34 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 35 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -31.57 340.67 -9.01 -40.58 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.09 Total: 3.50 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -5.52 Total: -26.64 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.76 Total: -24.08 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.06 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.35 Total: -1.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.57 -9.01 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730146823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.801 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds