Wall clock time and date at job start Tue Mar 31 2020 15:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47416 * 300.00196 * 3 2 1 6 6 H 1.48499 * 109.47261 * 60.00571 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38306 * 120.06267 * 359.43007 * 12 11 10 14 14 C 1.50703 * 119.92975 * 180.29756 * 13 12 11 15 15 N 1.46500 * 109.47050 * 270.29608 * 14 13 12 16 16 C 1.35867 * 119.96387 * 269.72311 * 15 14 13 17 17 N 1.29596 * 122.23587 * 179.71767 * 16 15 14 18 18 C 1.37014 * 121.68049 * 0.58871 * 17 16 15 19 19 C 1.39907 * 129.15527 * 179.68622 * 18 17 16 20 20 C 1.32754 * 115.82599 * 180.02562 * 19 18 17 21 21 S 1.75585 * 110.53861 * 359.97438 * 20 19 18 22 22 C 1.39107 * 118.19275 * 359.68766 * 18 17 16 23 23 C 1.34895 * 119.96302 * 90.00019 * 15 14 13 24 24 O 1.21963 * 120.63730 * 359.95463 * 23 15 14 25 25 C 1.38302 * 120.13835 * 0.59213 * 13 12 11 26 26 C 1.38094 * 120.07102 * 359.68476 * 25 13 12 27 27 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 29 29 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 30 30 H 1.09007 * 109.46898 * 30.29838 * 14 13 12 31 31 H 1.08998 * 109.47237 * 150.29459 * 14 13 12 32 32 H 1.07995 * 118.87911 * 359.97438 * 16 15 14 33 33 H 1.08005 * 122.08173 * 359.97438 * 19 18 17 34 34 H 1.08007 * 124.73245 * 180.02562 * 20 19 18 35 35 H 1.08006 * 119.96376 * 179.69808 * 25 13 12 36 36 H 1.08005 * 120.03539 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3213 14 6 4.3848 -7.0818 0.4391 15 7 4.6426 -7.6232 -0.8976 16 6 3.7754 -8.5124 -1.4484 17 7 3.9574 -9.0148 -2.6291 18 6 5.0477 -8.6856 -3.3909 19 6 5.3999 -9.1329 -4.6689 20 6 6.5270 -8.6369 -5.1649 21 16 7.2653 -7.5249 -4.0242 22 6 5.9669 -7.7825 -2.8671 23 6 5.7435 -7.2426 -1.5778 24 8 6.5309 -6.4483 -1.0915 25 6 2.1872 -5.8886 0.3346 26 6 1.4365 -4.7345 0.2274 27 1 -0.4850 0.8401 0.0004 28 1 3.9526 -2.4846 -0.0025 29 1 5.2809 -4.5483 0.1790 30 1 5.3322 -6.8570 0.9291 31 1 3.8360 -7.8160 1.0288 32 1 2.9028 -8.8075 -0.8848 33 1 4.7932 -9.8384 -5.2172 34 1 6.9328 -8.8825 -6.1353 35 1 1.6952 -6.8454 0.4293 36 1 0.3578 -4.7885 0.2374 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731157422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:01 Heat of formation + Delta-G solvation = 9.361217 kcal Electronic energy + Delta-G solvation = -24029.015494 eV Core-core repulsion = 20377.247816 eV Total energy + Delta-G solvation = -3651.767678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.70216 -40.81594 -39.21806 -38.55283 -37.47619 -34.88799 -34.27054 -31.89324 -31.74619 -30.83526 -27.95775 -27.01814 -25.89069 -24.81912 -23.64531 -22.50334 -21.95568 -20.05403 -19.89420 -19.06619 -18.61858 -17.84845 -17.48486 -17.17788 -16.46460 -16.31737 -15.94473 -15.79169 -15.56926 -15.17314 -15.15553 -14.58248 -14.52799 -14.38106 -14.24173 -13.86071 -13.70649 -13.49569 -13.08246 -13.05826 -12.61166 -12.45157 -12.34822 -12.15787 -12.09777 -11.49750 -11.24750 -11.03988 -10.85226 -10.81955 -10.09474 -9.85058 -9.07523 -8.97328 -8.53904 -6.22092 -0.80122 0.25984 0.44743 0.52378 0.54506 0.89904 1.28499 1.30906 1.37559 1.48541 1.67623 2.12609 2.51872 2.76848 2.97574 3.10467 3.40647 3.45140 3.79113 3.87768 3.89410 4.02971 4.10219 4.24082 4.28667 4.49885 4.61875 4.73483 4.76629 4.88476 4.99352 5.00091 5.07977 5.19531 5.37781 5.45210 5.48326 5.65681 5.71763 5.96665 6.13681 6.63246 6.74344 6.91052 7.68914 8.68848 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002932 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.083259 B = 9547.069063 C =10226.775899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.017 4.017 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.095 0.905 9 O -0.226 6.226 10 C 0.123 3.877 11 C -0.254 4.254 12 C -0.052 4.052 13 C -0.195 4.195 14 C 0.156 3.844 15 N -0.523 5.523 16 C 0.386 3.614 17 N -0.530 5.530 18 C 0.164 3.836 19 C -0.143 4.143 20 C -0.146 4.146 21 S 0.180 5.820 22 C -0.375 4.375 23 C 0.554 3.446 24 O -0.567 6.567 25 C -0.035 4.035 26 C -0.204 4.204 27 H 0.275 0.725 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.161 0.839 32 H 0.260 0.740 33 H 0.179 0.821 34 H 0.221 0.779 35 H 0.180 0.820 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.482 -22.444 -5.792 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.216 4.216 3 Si 0.835 3.165 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.112 0.888 9 O -0.132 6.132 10 C 0.072 3.928 11 C -0.273 4.273 12 C -0.071 4.071 13 C -0.197 4.197 14 C 0.036 3.964 15 N -0.243 5.243 16 C 0.098 3.902 17 N -0.251 5.251 18 C 0.038 3.962 19 C -0.173 4.173 20 C -0.283 4.283 21 S 0.444 5.556 22 C -0.497 4.497 23 C 0.350 3.650 24 O -0.448 6.448 25 C -0.053 4.053 26 C -0.223 4.223 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.178 0.822 32 H 0.275 0.725 33 H 0.196 0.804 34 H 0.238 0.762 35 H 0.197 0.803 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.493 -21.428 -6.018 25.049 hybrid contribution -0.390 1.295 0.314 1.388 sum 11.103 -20.133 -5.704 23.689 Atomic orbital electron populations 1.70162 1.07811 1.28900 1.48312 1.26521 0.96871 1.02517 0.95653 0.84578 0.77973 0.75060 0.78907 1.18184 1.19044 1.18819 1.21790 0.92295 0.81599 1.53609 0.88779 1.83933 1.35819 1.12586 1.80854 1.20055 0.91077 0.88490 0.93156 1.21179 0.93647 0.99555 1.12956 1.20927 0.98946 0.92138 0.95049 1.19775 0.94282 0.94068 1.11540 1.20908 1.01415 0.93849 0.80266 1.46864 1.20556 1.37700 1.19156 1.25915 0.92674 0.82183 0.89406 1.68621 1.20841 1.29792 1.05892 1.19581 0.89655 0.91906 0.95022 1.19813 0.99151 1.04945 0.93376 1.26268 0.98285 0.99015 1.04747 1.84214 1.21648 1.43636 1.06057 1.24778 1.08045 1.13790 1.03051 1.16223 0.81808 0.81779 0.85165 1.90898 1.46748 1.36067 1.71054 1.21091 0.91992 0.98000 0.94200 1.20584 1.00521 0.90171 1.11007 0.91609 0.87497 0.86909 0.88895 0.82186 0.72485 0.80418 0.76239 0.80293 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.97 13.67 21.61 0.30 -55.68 16 2 C -0.02 -0.99 5.49 84.83 0.47 -0.53 16 3 Si 1.02 43.80 29.55 68.60 2.03 45.83 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.42 -24.82 9.49 67.92 0.64 -24.18 16 8 H 0.09 5.31 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.63 9.76 -22.77 -0.22 -13.85 16 10 C 0.12 6.11 6.65 22.58 0.15 6.26 16 11 C -0.25 -11.76 9.17 22.39 0.21 -11.56 16 12 C -0.05 -1.97 9.69 22.25 0.22 -1.75 16 13 C -0.20 -5.58 5.47 -19.83 -0.11 -5.69 16 14 C 0.16 3.03 5.50 85.63 0.47 3.50 16 15 N -0.52 -11.71 2.58 -658.61 -1.70 -13.41 16 16 C 0.39 6.37 11.47 180.26 2.07 8.44 16 17 N -0.53 -11.18 10.49 -192.58 -2.02 -13.20 16 18 C 0.16 3.85 7.01 38.95 0.27 4.12 16 19 C -0.14 -2.42 10.15 21.50 0.22 -2.20 16 20 C -0.15 -2.02 11.13 66.64 0.74 -1.27 16 21 S 0.18 3.93 23.30 -56.49 -1.32 2.61 16 22 C -0.38 -10.34 6.49 23.30 0.15 -10.19 16 23 C 0.55 16.98 7.46 85.04 0.63 17.61 16 24 O -0.57 -21.17 16.28 -5.20 -0.08 -21.26 16 25 C -0.03 -0.94 9.69 22.25 0.22 -0.73 16 26 C -0.20 -7.93 9.99 22.39 0.22 -7.70 16 27 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 28 H 0.11 5.25 5.64 -2.91 -0.02 5.24 16 29 H 0.11 4.30 7.57 -2.92 -0.02 4.28 16 30 H 0.09 2.08 7.39 -2.38 -0.02 2.06 16 31 H 0.16 1.24 7.95 -2.39 -0.02 1.22 16 32 H 0.26 1.13 8.02 -2.91 -0.02 1.10 16 33 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.22 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -85.63 334.10 4.69 -80.94 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.14 Total: 13.88 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 6.57 Total: -25.87 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -3.42 Total: -82.28 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.31 Total: -35.11 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.32 Total: 2.61 kcal Total: -85.63 4.69 -80.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731157422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.302 kcal (2) G-P(sol) polarization free energy of solvation -85.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds