Wall clock time and date at job start Tue Mar 31 2020 15:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 117.00419 * 2 1 4 4 C 1.38485 * 120.08343 * 359.97389 * 3 2 1 5 5 C 1.38303 * 120.02728 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.90505 * 180.02562 * 5 4 3 7 7 O 1.45193 * 109.47202 * 90.00343 * 6 5 4 8 8 C 1.34228 * 117.00196 * 179.97438 * 7 6 5 9 9 O 1.20821 * 120.00027 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00082 * 179.97438 * 8 7 6 11 11 S 1.81001 * 109.47021 * 179.97438 * 10 8 7 12 12 C 1.76201 * 99.99833 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00287 * 0.02562 * 12 11 10 14 14 C 1.38800 * 119.99833 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00095 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99930 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47253 * 89.99607 * 16 14 12 18 18 H 1.48502 * 109.46964 * 209.99997 * 16 14 12 19 19 H 1.48500 * 109.46957 * 329.99851 * 16 14 12 20 20 C 1.38265 * 120.18820 * 359.97438 * 5 4 3 21 21 C 1.38205 * 120.16961 * 359.73881 * 20 5 4 22 22 C 1.38799 * 119.96973 * 0.53567 * 21 20 5 23 23 S 1.76199 * 120.09524 * 179.74608 * 22 21 20 24 24 C 1.81405 * 102.99690 * 359.72285 * 23 22 21 25 25 H 1.08998 * 109.47440 * 60.00161 * 1 2 3 26 26 H 1.09003 * 109.47893 * 180.02562 * 1 2 3 27 27 H 1.09012 * 109.47257 * 300.00397 * 1 2 3 28 28 H 1.08005 * 119.98613 * 0.02562 * 4 3 2 29 29 H 1.09006 * 109.46874 * 210.00147 * 6 5 4 30 30 H 1.09000 * 109.47245 * 330.00104 * 6 5 4 31 31 H 1.08995 * 109.47020 * 299.99690 * 10 8 7 32 32 H 1.08999 * 109.47475 * 59.99782 * 10 8 7 33 33 H 0.97000 * 119.99913 * 179.97438 * 15 14 12 34 34 H 1.08002 * 119.91901 * 180.02562 * 20 5 4 35 35 H 1.07998 * 120.01741 * 180.26204 * 21 20 5 36 36 H 1.08998 * 109.47280 * 60.00548 * 24 23 22 37 37 H 1.09008 * 109.46557 * 179.97438 * 24 23 22 38 38 H 1.09000 * 109.47133 * 299.99798 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2940 2.3743 -0.0005 5 6 1.9232 3.6059 -0.0011 6 6 1.1016 4.8693 -0.0011 7 8 0.8384 5.2754 1.3678 8 6 0.1135 6.3914 1.5437 9 8 -0.2874 7.0086 0.5855 10 6 -0.2004 6.8743 2.9362 11 16 -1.1844 8.3906 2.8415 12 6 -1.4012 8.7224 4.5583 13 1 -0.9713 8.0598 5.2949 14 6 -2.1236 9.8359 4.9641 15 7 -2.6472 10.6437 4.0664 16 14 -2.3529 10.1881 6.7843 17 1 -1.2390 11.0432 7.2672 18 1 -3.6438 10.8917 6.9936 19 1 -2.3582 8.9092 7.5391 20 6 3.3038 3.6814 -0.0005 21 6 4.0625 2.5262 0.0060 22 6 3.4382 1.2866 0.0008 23 16 4.4023 -0.1883 0.0023 24 6 6.1050 0.4374 0.0027 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2154 2.3191 -0.0006 29 1 1.6496 5.6589 -0.5154 30 1 0.1573 4.6886 -0.5145 31 1 -0.7638 6.1078 3.4683 32 1 0.7289 7.0774 3.4685 33 1 -3.1523 11.4217 4.3501 34 1 3.7906 4.6454 -0.0005 35 1 5.1407 2.5880 0.0107 36 1 6.2685 1.0456 0.8923 37 1 6.8005 -0.4020 0.0041 38 1 6.2693 1.0444 -0.8877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731705816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:54 Heat of formation + Delta-G solvation = -96.690235 kcal Electronic energy + Delta-G solvation = -21854.591699 eV Core-core repulsion = 18301.376485 eV Total energy + Delta-G solvation = -3553.215214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58345 -39.93478 -37.90150 -36.13085 -32.66780 -32.50423 -30.70627 -29.82126 -29.26402 -27.86739 -26.44213 -25.54411 -22.58004 -22.11841 -20.99486 -18.60449 -17.96531 -17.43144 -17.16712 -16.74647 -16.07425 -16.03941 -15.82673 -15.20099 -14.86281 -14.79988 -14.23098 -14.18684 -14.12342 -13.87458 -13.40466 -13.15050 -12.92769 -12.70428 -12.56291 -12.24444 -12.19548 -11.89640 -11.47286 -11.31299 -11.11745 -11.08437 -10.83501 -10.54411 -10.50555 -10.19612 -9.94218 -9.85722 -9.13295 -8.82989 -8.38461 -7.56410 -6.62609 -6.29159 -4.01995 0.68091 1.06200 1.19215 2.11150 2.61236 2.61851 2.91921 3.18487 3.19427 3.26254 3.34248 3.63613 4.13076 4.35818 4.38428 4.66674 4.67598 4.71175 4.82205 4.87309 4.88308 5.05515 5.06748 5.11001 5.19374 5.22419 5.27409 5.29184 5.42878 5.58396 5.74932 5.75801 5.82994 6.06108 6.21201 6.32090 6.62731 6.96428 7.53765 8.12299 8.28645 9.16421 10.78316 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.002076 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.989834 B =13483.669649 C =13609.149400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.143 3.857 4 C -0.166 4.166 5 C -0.054 4.054 6 C 0.106 3.894 7 O -0.355 6.355 8 C 0.479 3.521 9 O -0.487 6.487 10 C -0.128 4.128 11 S -0.059 6.059 12 C -0.536 4.536 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.922 3.078 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.271 1.271 20 C -0.111 4.111 21 C -0.100 4.100 22 C -0.114 4.114 23 S -0.092 6.092 24 C -0.154 4.154 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.137 0.863 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.270 0.730 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.818 -21.822 -9.510 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.092 3.908 4 C -0.186 4.186 5 C -0.057 4.057 6 C 0.032 3.968 7 O -0.273 6.273 8 C 0.320 3.680 9 O -0.373 6.373 10 C -0.276 4.276 11 S 0.168 5.832 12 C -0.684 4.684 13 H 0.094 0.906 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.748 3.252 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.227 4.227 23 S 0.150 5.850 24 C -0.322 4.322 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.072 -22.345 -10.776 28.041 hybrid contribution 0.404 1.116 2.099 2.412 sum 13.476 -21.228 -8.677 26.599 Atomic orbital electron populations 1.23137 0.77871 1.04278 1.01767 1.86129 1.21630 1.25903 1.88392 1.18259 0.90099 0.84799 0.97607 1.21093 1.00332 0.91129 1.06076 1.19367 0.93597 0.93111 0.99649 1.21732 0.99445 0.93690 0.81939 1.86595 1.67183 1.42981 1.30573 1.23349 0.74546 0.77555 0.92518 1.90671 1.48817 1.55208 1.42594 1.23306 1.06235 1.05816 0.92261 1.85409 1.65136 1.21478 1.11196 1.22840 1.40324 1.14104 0.91138 0.90575 1.25006 0.94560 0.94899 0.99063 1.70007 1.32821 1.13807 1.33586 0.86120 0.77842 0.78611 0.82666 1.20174 1.20698 1.19579 1.20920 0.92848 0.98489 1.00841 1.20973 0.99844 0.90469 1.01065 1.21026 0.93610 0.97618 1.10420 1.85684 0.99210 1.07577 1.92508 1.23744 0.96677 1.06146 1.05668 0.92407 0.87925 0.92210 0.84515 0.89952 0.90226 0.87907 0.87875 0.92057 0.84986 0.84893 0.89695 0.87373 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.31 9.87 -19.73 -0.19 -3.51 16 3 C 0.14 1.63 6.69 -39.07 -0.26 1.37 16 4 C -0.17 -1.82 8.69 -39.47 -0.34 -2.17 16 5 C -0.05 -0.63 5.52 -104.59 -0.58 -1.20 16 6 C 0.11 1.36 5.58 36.01 0.20 1.56 16 7 O -0.35 -5.62 10.20 -39.25 -0.40 -6.02 16 8 C 0.48 9.06 7.97 36.00 0.29 9.34 16 9 O -0.49 -10.48 15.61 -18.75 -0.29 -10.77 16 10 C -0.13 -2.59 6.27 36.00 0.23 -2.37 16 11 S -0.06 -1.55 20.58 -107.50 -2.21 -3.76 16 12 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 13 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.61 13.22 55.49 0.73 -24.88 16 16 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C -0.11 -1.14 9.69 -39.58 -0.38 -1.52 16 21 C -0.10 -0.95 9.36 -39.39 -0.37 -1.32 16 22 C -0.11 -1.23 6.12 -38.95 -0.24 -1.47 16 23 S -0.09 -0.87 22.05 -107.50 -2.37 -3.24 16 24 C -0.15 -0.86 9.15 101.05 0.92 0.06 16 25 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.41 7.67 -51.92 -0.40 0.01 16 28 H 0.14 1.29 6.30 -52.48 -0.33 0.96 16 29 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 30 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 32 H 0.10 1.94 8.14 -51.92 -0.42 1.51 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.13 0.93 5.88 -52.49 -0.31 0.63 16 36 H 0.08 0.43 7.74 -51.92 -0.40 0.03 16 37 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.08 0.40 7.76 -51.92 -0.40 0.00 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -33.62 358.14 -8.44 -42.06 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.74 Total: -2.08 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 0.66 Total: -9.23 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.73 Total: -24.88 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.89 Total: -20.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -4.58 Total: -7.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.62 -8.44 -42.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731705816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.629 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds