Wall clock time and date at job start Tue Mar 31 2020 15:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 117.00419 * 2 1 4 4 C 1.38485 * 120.08343 * 359.97389 * 3 2 1 5 5 C 1.38303 * 120.02728 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.90505 * 180.02562 * 5 4 3 7 7 O 1.45193 * 109.47202 * 90.00343 * 6 5 4 8 8 C 1.34228 * 117.00196 * 179.97438 * 7 6 5 9 9 O 1.20821 * 120.00027 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00082 * 179.97438 * 8 7 6 11 11 S 1.81001 * 109.47021 * 179.97438 * 10 8 7 12 12 C 1.76201 * 99.99833 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00287 * 0.02562 * 12 11 10 14 14 C 1.38800 * 119.99833 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00095 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99930 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47253 * 89.99607 * 16 14 12 18 18 H 1.48502 * 109.46964 * 209.99997 * 16 14 12 19 19 H 1.48500 * 109.46957 * 329.99851 * 16 14 12 20 20 C 1.38265 * 120.18820 * 359.97438 * 5 4 3 21 21 C 1.38205 * 120.16961 * 359.73881 * 20 5 4 22 22 C 1.38799 * 119.96973 * 0.53567 * 21 20 5 23 23 S 1.76199 * 120.09524 * 179.74608 * 22 21 20 24 24 C 1.81405 * 102.99690 * 359.72285 * 23 22 21 25 25 H 1.08998 * 109.47440 * 60.00161 * 1 2 3 26 26 H 1.09003 * 109.47893 * 180.02562 * 1 2 3 27 27 H 1.09012 * 109.47257 * 300.00397 * 1 2 3 28 28 H 1.08005 * 119.98613 * 0.02562 * 4 3 2 29 29 H 1.09006 * 109.46874 * 210.00147 * 6 5 4 30 30 H 1.09000 * 109.47245 * 330.00104 * 6 5 4 31 31 H 1.08995 * 109.47020 * 299.99690 * 10 8 7 32 32 H 1.08999 * 109.47475 * 59.99782 * 10 8 7 33 33 H 0.97000 * 119.99913 * 179.97438 * 15 14 12 34 34 H 1.08002 * 119.91901 * 180.02562 * 20 5 4 35 35 H 1.07998 * 120.01741 * 180.26204 * 21 20 5 36 36 H 1.08998 * 109.47280 * 60.00548 * 24 23 22 37 37 H 1.09008 * 109.46557 * 179.97438 * 24 23 22 38 38 H 1.09000 * 109.47133 * 299.99798 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2940 2.3743 -0.0005 5 6 1.9232 3.6059 -0.0011 6 6 1.1016 4.8693 -0.0011 7 8 0.8384 5.2754 1.3678 8 6 0.1135 6.3914 1.5437 9 8 -0.2874 7.0086 0.5855 10 6 -0.2004 6.8743 2.9362 11 16 -1.1844 8.3906 2.8415 12 6 -1.4012 8.7224 4.5583 13 1 -0.9713 8.0598 5.2949 14 6 -2.1236 9.8359 4.9641 15 7 -2.6472 10.6437 4.0664 16 14 -2.3529 10.1881 6.7843 17 1 -1.2390 11.0432 7.2672 18 1 -3.6438 10.8917 6.9936 19 1 -2.3582 8.9092 7.5391 20 6 3.3038 3.6814 -0.0005 21 6 4.0625 2.5262 0.0060 22 6 3.4382 1.2866 0.0008 23 16 4.4023 -0.1883 0.0023 24 6 6.1050 0.4374 0.0027 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2154 2.3191 -0.0006 29 1 1.6496 5.6589 -0.5154 30 1 0.1573 4.6886 -0.5145 31 1 -0.7638 6.1078 3.4683 32 1 0.7289 7.0774 3.4685 33 1 -3.1523 11.4217 4.3501 34 1 3.7906 4.6454 -0.0005 35 1 5.1407 2.5880 0.0107 36 1 6.2685 1.0456 0.8923 37 1 6.8005 -0.4020 0.0041 38 1 6.2693 1.0444 -0.8877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731705816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:54 Heat of formation + Delta-G solvation = -115.645244 kcal Electronic energy + Delta-G solvation = -21855.413650 eV Core-core repulsion = 18301.376485 eV Total energy + Delta-G solvation = -3554.037165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64897 -41.05851 -38.73615 -37.47194 -34.61205 -33.56883 -31.52209 -31.26531 -29.76656 -28.62277 -27.74205 -27.25124 -23.33101 -23.07597 -22.33914 -19.92433 -19.36599 -18.68175 -18.21831 -17.79916 -17.25165 -17.00267 -16.88914 -16.77113 -16.10548 -15.94831 -15.47953 -15.17179 -14.83094 -14.63467 -14.54935 -14.51658 -14.02986 -13.63801 -13.57675 -13.31916 -13.18064 -13.02855 -12.89979 -12.78539 -12.66551 -12.19974 -12.04174 -11.78765 -11.78059 -11.63435 -11.15996 -11.15194 -10.77276 -10.38254 -9.59459 -8.73521 -8.37609 -8.30285 -6.17122 -0.16899 0.27922 0.53944 1.06486 1.11082 1.41621 1.43203 1.51000 1.55339 1.88090 2.23698 2.25377 2.58400 2.97502 3.26190 3.45433 3.61934 3.88562 3.90754 4.13334 4.15521 4.19288 4.29462 4.30814 4.31598 4.34048 4.36624 4.42201 4.44989 4.63660 4.70369 4.88008 4.97777 5.04239 5.23970 5.39446 5.41288 5.57064 6.18136 6.23711 6.66644 7.04321 8.71547 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.002076 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.989834 B =13483.669649 C =13609.149400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.127 3.873 4 C -0.171 4.171 5 C -0.069 4.069 6 C 0.104 3.896 7 O -0.348 6.348 8 C 0.490 3.510 9 O -0.518 6.518 10 C -0.109 4.109 11 S -0.136 6.136 12 C -0.548 4.548 13 H 0.085 0.915 14 C 0.016 3.984 15 N -0.909 5.909 16 Si 0.999 3.001 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.259 1.259 20 C -0.114 4.114 21 C -0.098 4.098 22 C -0.123 4.123 23 S -0.129 6.129 24 C -0.144 4.144 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.060 0.940 28 H 0.146 0.854 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.273 0.727 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.376 -22.969 -8.480 28.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.077 3.923 4 C -0.191 4.191 5 C -0.072 4.072 6 C 0.031 3.969 7 O -0.265 6.265 8 C 0.332 3.668 9 O -0.406 6.406 10 C -0.257 4.257 11 S 0.092 5.908 12 C -0.696 4.696 13 H 0.103 0.897 14 C -0.189 4.189 15 N -0.545 5.545 16 Si 0.821 3.179 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.183 1.183 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.236 4.236 23 S 0.113 5.887 24 C -0.312 4.312 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.647 -23.527 -9.752 29.380 hybrid contribution 0.037 1.297 1.681 2.124 sum 14.683 -22.230 -8.071 27.838 Atomic orbital electron populations 1.23368 0.76388 1.05771 1.02190 1.86116 1.23266 1.25842 1.88403 1.18471 0.90683 0.85064 0.98127 1.21209 1.00921 0.91029 1.05974 1.19320 0.94085 0.92422 1.01387 1.21965 1.00148 0.94611 0.80166 1.86563 1.65971 1.41195 1.32769 1.22964 0.74352 0.77954 0.91482 1.90666 1.50241 1.56401 1.43324 1.23098 1.05999 1.02843 0.93804 1.85506 1.67236 1.26048 1.12059 1.23188 1.40452 1.14561 0.91377 0.89653 1.26109 0.93969 0.94530 1.04311 1.70157 1.33754 1.14486 1.36136 0.84945 0.77952 0.78870 0.76177 1.19255 1.20253 1.18267 1.21160 0.92480 0.99548 1.00160 1.21272 1.01137 0.89667 1.00076 1.21317 0.93833 0.98486 1.09934 1.85787 1.02332 1.08240 1.92355 1.23850 0.93595 1.07055 1.06667 0.91614 0.85986 0.92115 0.83685 0.89234 0.89848 0.86143 0.86032 0.91843 0.83461 0.82303 0.88809 0.85619 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.32 -6.82 9.87 -93.53 -0.92 -7.75 16 3 C 0.13 2.82 6.69 22.60 0.15 2.97 16 4 C -0.17 -3.64 8.69 22.34 0.19 -3.44 16 5 C -0.07 -1.51 5.52 -19.84 -0.11 -1.62 16 6 C 0.10 2.57 5.58 71.24 0.40 2.97 16 7 O -0.35 -10.56 10.20 -51.40 -0.52 -11.08 16 8 C 0.49 18.18 7.97 71.24 0.57 18.75 16 9 O -0.52 -22.36 15.61 21.98 0.34 -22.01 16 10 C -0.11 -4.31 6.27 71.24 0.45 -3.87 16 11 S -0.14 -7.27 20.58 -56.49 -1.16 -8.43 16 12 C -0.55 -30.52 9.50 67.95 0.65 -29.88 16 13 H 0.09 4.42 7.80 -2.91 -0.02 4.40 16 14 C 0.02 0.89 5.49 84.86 0.47 1.36 16 15 N -0.91 -54.44 13.22 21.65 0.29 -54.15 16 16 Si 1.00 42.70 29.55 68.60 2.03 44.73 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 20 C -0.11 -2.13 9.69 22.27 0.22 -1.92 16 21 C -0.10 -1.67 9.36 22.40 0.21 -1.46 16 22 C -0.12 -2.52 6.12 22.68 0.14 -2.38 16 23 S -0.13 -2.29 22.05 -56.49 -1.25 -3.54 16 24 C -0.14 -1.23 9.15 113.37 1.04 -0.20 16 25 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 26 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 0.80 7.67 -2.38 -0.02 0.79 16 28 H 0.15 2.67 6.30 -2.91 -0.02 2.65 16 29 H 0.09 2.08 8.08 -2.38 -0.02 2.06 16 30 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 31 H 0.12 4.35 8.14 -2.40 -0.02 4.33 16 32 H 0.12 4.37 8.14 -2.40 -0.02 4.35 16 33 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.16 1.76 5.88 -2.91 -0.02 1.74 16 36 H 0.09 0.68 7.74 -2.39 -0.02 0.66 16 37 H 0.13 0.66 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.63 7.76 -2.39 -0.02 0.61 16 Total: -1.00 -73.16 358.14 5.35 -67.81 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.08 Total: 11.79 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 5.47 Total: -17.37 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.29 Total: -54.15 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.10 Total: -40.84 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -2.41 Total: -11.96 kcal Total: -73.16 5.35 -67.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731705816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.838 kcal (2) G-P(sol) polarization free energy of solvation -73.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds