Wall clock time and date at job start Tue Mar 31 2020 15:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99936 * 2 1 4 4 H 1.48500 * 109.46912 * 269.99932 * 3 2 1 5 5 H 1.48501 * 109.47164 * 29.99433 * 3 2 1 6 6 H 1.48492 * 109.47157 * 149.99991 * 3 2 1 7 7 C 1.37878 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47562 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47744 * 180.02562 * 10 9 7 12 12 O 1.45194 * 109.47397 * 179.97438 * 11 10 9 13 13 C 1.34227 * 117.00025 * 179.97438 * 12 11 10 14 14 O 1.20821 * 120.00201 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99899 * 180.02562 * 13 12 11 16 16 S 1.81399 * 109.46964 * 179.97438 * 15 13 12 17 17 C 1.81397 * 102.99921 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47152 * 180.02562 * 17 16 15 19 19 C 1.38270 * 119.99101 * 270.27576 * 18 17 16 20 20 C 1.38215 * 120.02537 * 180.27948 * 19 18 17 21 21 C 1.38238 * 120.01126 * 359.44038 * 20 19 18 22 22 C 1.38325 * 119.98878 * 0.28199 * 21 20 19 23 23 Cl 1.73606 * 120.01335 * 179.97438 * 22 21 20 24 24 C 1.38193 * 119.99765 * 89.99978 * 18 17 16 25 25 H 0.96995 * 120.00151 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47191 * 59.99992 * 9 7 2 27 27 H 1.09003 * 109.47602 * 300.00806 * 9 7 2 28 28 H 1.09000 * 109.47110 * 59.99653 * 10 9 7 29 29 H 1.08999 * 109.46834 * 300.00119 * 10 9 7 30 30 H 1.09006 * 109.46796 * 59.99829 * 11 10 9 31 31 H 1.09004 * 109.46928 * 300.00423 * 11 10 9 32 32 H 1.08997 * 109.46862 * 60.00177 * 15 13 12 33 33 H 1.08996 * 109.47236 * 299.99901 * 15 13 12 34 34 H 1.08998 * 109.47482 * 59.99881 * 17 16 15 35 35 H 1.09000 * 109.47133 * 299.99750 * 17 16 15 36 36 H 1.07997 * 119.98420 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.99636 * 179.72646 * 20 19 18 38 38 H 1.07999 * 120.00577 * 180.25936 * 21 20 19 39 39 H 1.08003 * 120.00423 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9872 0.0033 12 8 2.4238 -6.0908 0.0037 13 6 1.9108 -7.3311 0.0047 14 8 0.7130 -7.4895 0.0048 15 6 2.8288 -8.5263 0.0057 16 16 1.8409 -10.0476 0.0077 17 6 3.1010 -11.3524 0.0096 18 6 2.4279 -12.7008 0.0107 19 6 2.1136 -13.3154 1.2088 20 6 1.5015 -14.5546 1.2107 21 6 1.1927 -15.1751 0.0147 22 6 1.5016 -14.5582 -1.1842 23 17 1.1147 -15.3372 -2.6867 24 6 2.1197 -13.3202 -1.1855 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6246 -2.5563 0.8919 28 1 2.8720 -3.6036 0.8926 29 1 2.8719 -3.6051 -0.8873 30 1 0.8539 -5.0454 -0.8869 31 1 0.8533 -5.0443 0.8931 32 1 3.4576 -8.5006 0.8957 33 1 3.4577 -8.5022 -0.8842 34 1 3.7230 -11.2557 0.8994 35 1 3.7230 -11.2581 -0.8805 36 1 2.3502 -12.8287 2.1434 37 1 1.2602 -15.0362 2.1469 38 1 0.7106 -16.1415 0.0163 39 1 2.3616 -12.8382 -2.1213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733866767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:46 Heat of formation + Delta-G solvation = -87.108089 kcal Electronic energy + Delta-G solvation = -20838.925013 eV Core-core repulsion = 17284.081605 eV Total energy + Delta-G solvation = -3554.843407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27963 -39.86650 -36.94022 -36.57537 -34.03809 -33.37685 -31.86099 -31.25151 -30.60492 -27.71527 -26.95621 -23.43602 -23.21181 -22.21512 -21.06373 -20.36335 -17.78740 -17.55686 -16.79776 -16.69575 -16.35510 -16.17841 -15.96208 -15.60757 -14.71179 -14.65467 -14.47593 -14.30839 -13.82365 -13.62793 -13.40277 -13.11955 -13.03009 -12.22583 -12.07942 -12.05672 -11.93710 -11.91424 -11.80070 -11.30810 -10.99518 -10.72444 -10.68974 -10.49078 -10.45256 -10.44600 -9.76810 -9.54700 -9.39213 -9.19186 -9.14456 -8.40667 -8.02489 -6.05350 -4.08701 0.34361 0.69846 1.24691 1.67145 2.08475 2.18208 2.81463 3.18353 3.29704 3.35993 3.39285 3.98864 4.21098 4.41198 4.48010 4.58116 4.62899 4.69498 4.71141 4.86965 4.90916 4.98027 5.18900 5.30564 5.35662 5.52707 5.56337 5.68602 5.79120 5.91595 5.95756 6.24114 6.39483 6.49326 6.77077 6.93825 7.57602 7.68224 7.77216 7.92609 8.33326 8.97468 9.55717 11.06027 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.001498 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.549411 B =18682.680922 C =18936.035038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.354 6.354 13 C 0.473 3.527 14 O -0.490 6.490 15 C -0.108 4.108 16 S -0.166 6.166 17 C -0.069 4.069 18 C -0.059 4.059 19 C -0.096 4.096 20 C -0.106 4.106 21 C -0.106 4.106 22 C -0.034 4.034 23 Cl -0.068 7.068 24 C -0.092 4.092 25 H 0.262 0.738 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 -33.464 0.487 34.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.270 6.270 13 C 0.314 3.686 14 O -0.378 6.378 15 C -0.257 4.257 16 S 0.063 5.937 17 C -0.216 4.216 18 C -0.061 4.061 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.061 4.061 23 Cl -0.039 7.039 24 C -0.112 4.112 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.672 -33.437 0.353 33.916 hybrid contribution 1.582 1.093 -0.171 1.930 sum 7.254 -32.344 0.182 33.148 Atomic orbital electron populations 1.69966 1.06083 1.26798 1.50419 1.25033 0.94887 0.99381 0.95159 0.86535 0.79783 0.83199 0.78140 1.20607 1.21172 1.19828 1.21164 0.93123 0.90665 1.51157 0.92417 1.19058 0.93838 0.90698 0.97763 1.21780 0.99977 0.90870 1.02016 1.23587 0.91147 0.83231 1.02420 1.86471 1.42745 1.14681 1.83149 1.22359 0.87876 0.84687 0.73708 1.90719 1.16322 1.86420 1.44299 1.23127 1.01054 0.92818 1.08665 1.87907 1.11477 0.96197 1.98101 1.22450 0.99389 0.93291 1.06516 1.19072 0.99788 0.94094 0.93117 1.21202 0.97472 0.95052 0.97826 1.21129 0.98342 0.95133 0.97854 1.21135 1.00014 1.00633 0.90807 1.20884 1.02709 0.95001 0.87513 1.98387 1.92892 1.80464 1.32200 1.20961 0.98054 0.93441 0.98766 0.92864 0.96173 0.96174 0.92084 0.92092 0.91284 0.91279 0.85957 0.85954 0.88428 0.88556 0.84891 0.84682 0.84780 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 11 C 0.07 1.26 5.47 37.16 0.20 1.46 16 12 O -0.35 -5.68 10.22 -39.25 -0.40 -6.08 16 13 C 0.47 6.94 7.98 36.01 0.29 7.22 16 14 O -0.49 -8.81 15.61 -18.75 -0.29 -9.11 16 15 C -0.11 -1.04 6.54 36.01 0.24 -0.80 16 16 S -0.17 -1.71 20.86 -107.50 -2.24 -3.96 16 17 C -0.07 -0.44 6.07 36.01 0.22 -0.22 16 18 C -0.06 -0.42 5.14 -104.63 -0.54 -0.96 16 19 C -0.10 -0.60 9.70 -39.58 -0.38 -0.99 16 20 C -0.11 -0.61 10.05 -39.59 -0.40 -1.01 16 21 C -0.11 -0.68 9.83 -39.55 -0.39 -1.07 16 22 C -0.03 -0.26 6.32 -39.50 -0.25 -0.51 16 23 Cl -0.07 -0.52 28.96 -51.86 -1.50 -2.02 16 24 C -0.09 -0.69 9.49 -39.55 -0.38 -1.07 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 32 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.10 0.48 8.08 -51.92 -0.42 0.06 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -32.65 371.01 -10.67 -43.33 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -5.45 Total: -4.92 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.09 Total: -13.29 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.69 Total: -15.19 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.24 Total: -3.96 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.65 -10.67 -43.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.782 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds