Wall clock time and date at job start Tue Mar 31 2020 15:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99936 * 2 1 4 4 H 1.48500 * 109.46912 * 269.99932 * 3 2 1 5 5 H 1.48501 * 109.47164 * 29.99433 * 3 2 1 6 6 H 1.48492 * 109.47157 * 149.99991 * 3 2 1 7 7 C 1.37878 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47562 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47744 * 180.02562 * 10 9 7 12 12 O 1.45194 * 109.47397 * 179.97438 * 11 10 9 13 13 C 1.34227 * 117.00025 * 179.97438 * 12 11 10 14 14 O 1.20821 * 120.00201 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99899 * 180.02562 * 13 12 11 16 16 S 1.81399 * 109.46964 * 179.97438 * 15 13 12 17 17 C 1.81397 * 102.99921 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47152 * 180.02562 * 17 16 15 19 19 C 1.38270 * 119.99101 * 270.27576 * 18 17 16 20 20 C 1.38215 * 120.02537 * 180.27948 * 19 18 17 21 21 C 1.38238 * 120.01126 * 359.44038 * 20 19 18 22 22 C 1.38325 * 119.98878 * 0.28199 * 21 20 19 23 23 Cl 1.73606 * 120.01335 * 179.97438 * 22 21 20 24 24 C 1.38193 * 119.99765 * 89.99978 * 18 17 16 25 25 H 0.96995 * 120.00151 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47191 * 59.99992 * 9 7 2 27 27 H 1.09003 * 109.47602 * 300.00806 * 9 7 2 28 28 H 1.09000 * 109.47110 * 59.99653 * 10 9 7 29 29 H 1.08999 * 109.46834 * 300.00119 * 10 9 7 30 30 H 1.09006 * 109.46796 * 59.99829 * 11 10 9 31 31 H 1.09004 * 109.46928 * 300.00423 * 11 10 9 32 32 H 1.08997 * 109.46862 * 60.00177 * 15 13 12 33 33 H 1.08996 * 109.47236 * 299.99901 * 15 13 12 34 34 H 1.08998 * 109.47482 * 59.99881 * 17 16 15 35 35 H 1.09000 * 109.47133 * 299.99750 * 17 16 15 36 36 H 1.07997 * 119.98420 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.99636 * 179.72646 * 20 19 18 38 38 H 1.07999 * 120.00577 * 180.25936 * 21 20 19 39 39 H 1.08003 * 120.00423 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9872 0.0033 12 8 2.4238 -6.0908 0.0037 13 6 1.9108 -7.3311 0.0047 14 8 0.7130 -7.4895 0.0048 15 6 2.8288 -8.5263 0.0057 16 16 1.8409 -10.0476 0.0077 17 6 3.1010 -11.3524 0.0096 18 6 2.4279 -12.7008 0.0107 19 6 2.1136 -13.3154 1.2088 20 6 1.5015 -14.5546 1.2107 21 6 1.1927 -15.1751 0.0147 22 6 1.5016 -14.5582 -1.1842 23 17 1.1147 -15.3372 -2.6867 24 6 2.1197 -13.3202 -1.1855 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6246 -2.5563 0.8919 28 1 2.8720 -3.6036 0.8926 29 1 2.8719 -3.6051 -0.8873 30 1 0.8539 -5.0454 -0.8869 31 1 0.8533 -5.0443 0.8931 32 1 3.4576 -8.5006 0.8957 33 1 3.4577 -8.5022 -0.8842 34 1 3.7230 -11.2557 0.8994 35 1 3.7230 -11.2581 -0.8805 36 1 2.3502 -12.8287 2.1434 37 1 1.2602 -15.0362 2.1469 38 1 0.7106 -16.1415 0.0163 39 1 2.3616 -12.8382 -2.1213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733866767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:45 Heat of formation + Delta-G solvation = -102.705069 kcal Electronic energy + Delta-G solvation = -20839.601348 eV Core-core repulsion = 17284.081605 eV Total energy + Delta-G solvation = -3555.519743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53271 -40.34176 -37.93115 -37.48451 -35.95427 -33.85351 -33.74532 -31.73009 -31.61378 -28.87612 -28.14173 -25.27628 -23.68681 -22.84690 -22.21652 -22.12814 -18.93452 -18.54113 -18.20611 -17.93115 -17.49786 -16.72065 -16.68936 -16.48407 -16.43936 -15.98568 -15.23516 -14.82776 -14.72468 -14.57714 -14.29860 -14.14562 -13.87661 -13.85545 -13.72524 -13.42773 -12.82885 -12.55340 -12.52091 -12.44060 -12.38281 -12.34150 -12.10798 -11.88998 -11.83482 -11.47095 -11.44183 -11.24862 -11.09986 -10.57635 -9.88835 -9.65609 -8.77517 -8.22034 -6.33844 -0.24178 0.20437 0.60342 1.04036 1.13616 1.41791 1.43250 1.47636 1.54403 1.70031 2.41353 2.70202 3.11945 3.47220 3.57535 3.79942 3.94686 4.01424 4.03197 4.03286 4.18498 4.21707 4.25989 4.39185 4.43293 4.56563 4.73302 4.78391 4.83894 4.92106 5.06661 5.20815 5.33801 5.36353 5.44269 5.49635 5.62750 5.79598 5.79649 6.18221 6.56742 6.82273 7.35884 8.90110 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.001498 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.549411 B =18682.680922 C =18936.035038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.079 3.921 12 O -0.350 6.350 13 C 0.469 3.531 14 O -0.529 6.529 15 C -0.090 4.090 16 S -0.235 6.235 17 C -0.048 4.048 18 C -0.071 4.071 19 C -0.100 4.100 20 C -0.108 4.108 21 C -0.112 4.112 22 C -0.050 4.050 23 Cl -0.076 7.076 24 C -0.103 4.103 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.003 1.003 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.147 0.853 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.713 -34.173 1.171 35.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.131 4.131 11 C 0.005 3.995 12 O -0.267 6.267 13 C 0.312 3.688 14 O -0.418 6.418 15 C -0.238 4.238 16 S -0.006 6.006 17 C -0.194 4.194 18 C -0.072 4.072 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.131 4.131 22 C -0.077 4.077 23 Cl -0.048 7.048 24 C -0.124 4.124 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.015 0.985 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.167 0.833 37 H 0.177 0.823 38 H 0.165 0.835 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.088 -34.164 1.034 35.123 hybrid contribution 0.806 1.181 -0.366 1.476 sum 8.895 -32.983 0.667 34.168 Atomic orbital electron populations 1.70105 1.07909 1.27927 1.51414 1.26023 0.95786 1.03566 0.94577 0.85373 0.78649 0.78068 0.78510 1.19760 1.20883 1.18464 1.21632 0.93811 0.91832 1.50920 0.91527 1.18949 0.94325 0.92566 0.95466 1.21460 0.98712 0.90157 1.02747 1.23170 0.90925 0.83497 1.01887 1.86454 1.41814 1.14996 1.83430 1.23365 0.88308 0.85011 0.72089 1.90714 1.18346 1.86727 1.45992 1.23147 0.99734 0.89374 1.11502 1.88192 1.15264 0.98761 1.98363 1.22468 0.97834 0.90691 1.08456 1.19230 1.00311 0.94498 0.93208 1.21502 0.96943 0.95285 0.98253 1.21454 0.97564 0.94996 0.98547 1.21396 0.99783 1.01238 0.90713 1.21058 1.03557 0.95411 0.87664 1.98379 1.93002 1.80588 1.32793 1.21093 0.98401 0.93668 0.99243 0.92705 0.98552 0.98497 0.91232 0.91291 0.91968 0.91868 0.82809 0.83062 0.86124 0.86960 0.83293 0.82313 0.83483 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.27 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.78 5.53 30.59 0.17 -3.61 16 11 C 0.08 2.88 5.47 71.98 0.39 3.27 16 12 O -0.35 -10.79 10.22 -51.38 -0.53 -11.32 16 13 C 0.47 13.22 7.98 71.24 0.57 13.79 16 14 O -0.53 -19.11 15.61 21.98 0.34 -18.77 16 15 C -0.09 -1.48 6.54 71.24 0.47 -1.02 16 16 S -0.23 -4.52 20.86 -56.49 -1.18 -5.70 16 17 C -0.05 -0.48 6.07 71.24 0.43 -0.04 16 18 C -0.07 -0.88 5.14 -19.87 -0.10 -0.98 16 19 C -0.10 -1.06 9.70 22.27 0.22 -0.84 16 20 C -0.11 -1.02 10.05 22.26 0.22 -0.80 16 21 C -0.11 -1.30 9.83 22.29 0.22 -1.08 16 22 C -0.05 -0.73 6.32 22.32 0.14 -0.59 16 23 Cl -0.08 -1.16 28.96 -2.72 -0.08 -1.23 16 24 C -0.10 -1.48 9.49 22.29 0.21 -1.27 16 25 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.06 2.34 8.13 -2.38 -0.02 2.32 16 31 H 0.06 2.36 8.13 -2.38 -0.02 2.34 16 32 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 0.67 8.09 -2.39 -0.02 0.65 16 35 H 0.11 0.78 8.08 -2.39 -0.02 0.76 16 36 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 38 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -71.96 371.01 5.69 -66.26 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.04 Total: 3.22 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 3.78 Total: -21.75 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.28 Total: -56.48 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.18 Total: -30.09 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -4.52 SS G_CDS: -1.18 Total: -5.70 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.23 kcal Total: -71.96 5.69 -66.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.443 kcal (2) G-P(sol) polarization free energy of solvation -71.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds