Wall clock time and date at job start Tue Mar 31 2020 15:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48497 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47235 * 299.99666 * 3 2 1 6 6 H 1.48504 * 109.46936 * 59.99993 * 3 2 1 7 7 C 1.38810 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99884 * 163.07545 * 7 2 1 9 9 N 1.36934 * 119.99884 * 343.07082 * 7 2 1 10 10 C 1.46923 * 120.63562 * 331.85158 * 9 7 2 11 11 C 1.53199 * 108.77603 * 233.59079 * 10 9 7 12 12 C 1.53035 * 109.30922 * 305.35760 * 11 10 9 13 13 N 1.46905 * 109.45940 * 181.38843 * 12 11 10 14 14 C 1.46898 * 110.99796 * 155.00439 * 13 12 11 15 15 C 1.50710 * 109.46820 * 180.02562 * 14 13 12 16 16 O 1.34348 * 125.79382 * 269.68732 * 15 14 13 17 17 C 1.34298 * 109.48143 * 179.88482 * 16 15 14 18 18 C 1.34522 * 108.43544 * 0.37915 * 17 16 15 19 19 C 1.34570 * 125.79713 * 89.99657 * 15 14 13 20 20 Br 1.89102 * 126.58707 * 359.97438 * 19 15 14 21 21 C 1.53039 * 109.53897 * 61.36864 * 12 11 10 22 22 C 1.46934 * 120.63120 * 151.82932 * 9 7 2 23 23 H 0.96999 * 119.99934 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.59317 * 113.79668 * 10 9 7 25 25 H 1.09006 * 109.70368 * 353.44206 * 10 9 7 26 26 H 1.09000 * 109.49168 * 185.41033 * 11 10 9 27 27 H 1.08996 * 109.50040 * 65.31080 * 11 10 9 28 28 H 1.09006 * 109.46570 * 301.34877 * 12 11 10 29 29 H 1.00890 * 110.99761 * 31.04616 * 13 12 11 30 30 H 1.09001 * 109.47234 * 299.99697 * 14 13 12 31 31 H 1.08998 * 109.47730 * 59.99972 * 14 13 12 32 32 H 1.07990 * 125.78568 * 180.12771 * 17 16 15 33 33 H 1.08000 * 126.57385 * 179.74654 * 18 17 16 34 34 H 1.09001 * 109.49425 * 58.58208 * 21 12 11 35 35 H 1.08998 * 109.49930 * 178.67888 * 21 12 11 36 36 H 1.08999 * 109.58632 * 246.20063 * 22 9 7 37 37 H 1.09001 * 109.58462 * 6.48040 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2717 9 7 1.3700 -2.3622 0.3464 10 6 0.2260 -2.3398 1.2680 11 6 0.4974 -3.3187 2.4147 12 6 0.8118 -4.7004 1.8368 13 7 1.0400 -5.6497 2.9345 14 6 0.7598 -7.0267 2.5064 15 6 1.0038 -7.9697 3.6565 16 8 2.1669 -8.5796 3.9393 17 6 2.0177 -9.3432 5.0339 18 6 0.7461 -9.2338 5.4588 19 6 0.0921 -8.3483 4.5710 20 35 -1.7163 -7.8016 4.6530 21 6 2.0672 -4.6172 0.9655 22 6 1.8137 -3.6530 -0.1975 23 1 -0.4850 0.8400 -0.0004 24 1 -0.6771 -2.6403 0.7369 25 1 0.0966 -1.3344 1.6688 26 1 -0.3833 -3.3835 3.0538 27 1 1.3471 -2.9671 2.9999 28 1 -0.0284 -5.0408 1.2314 29 1 0.4912 -5.4041 3.7447 30 1 -0.2799 -7.1038 2.1881 31 1 1.4146 -7.2893 1.6756 32 1 2.7870 -9.9464 5.4928 33 1 0.3084 -9.7277 6.3138 34 1 2.9021 -4.2533 1.5644 35 1 2.3041 -5.6062 0.5732 36 1 1.0401 -4.0607 -0.8482 37 1 2.7331 -3.5132 -0.7662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735321308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:44 Heat of formation + Delta-G solvation = 38.982241 kcal Electronic energy + Delta-G solvation = -19991.243983 eV Core-core repulsion = 16816.980457 eV Total energy + Delta-G solvation = -3174.263526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.88880 -38.13238 -35.43571 -33.79157 -32.48769 -31.06579 -30.43301 -29.72729 -28.55614 -25.50670 -24.07273 -22.21596 -21.92265 -21.29174 -20.54007 -19.08996 -17.60338 -16.71324 -16.44920 -15.60483 -14.93484 -14.46501 -14.37549 -14.07073 -13.71893 -13.46999 -13.16367 -13.05025 -13.05002 -12.33286 -12.13576 -12.00900 -11.76915 -11.37029 -11.02231 -10.76784 -10.70663 -10.44968 -10.31033 -10.18826 -9.92653 -9.74597 -9.59777 -9.49003 -8.73525 -8.45713 -8.29704 -6.65022 -5.77060 -3.19015 1.33101 1.42258 2.10050 2.75353 3.38927 3.46931 3.49481 4.21477 4.48535 4.52033 4.60709 4.93692 5.24179 5.31456 5.38034 5.39098 5.44272 5.54282 5.68314 5.73498 5.91100 5.97868 6.14920 6.35053 6.43754 6.52412 6.63409 6.66468 6.74582 6.83002 7.04370 7.22829 7.38203 7.48493 7.66984 7.82513 8.47484 9.23674 9.87209 10.44045 11.31710 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.024631 B = 0.002985 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.524037 B = 9378.212752 C =10082.093292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.141 4.141 12 C 0.097 3.903 13 N -0.681 5.681 14 C 0.127 3.873 15 C 0.053 3.947 16 O -0.155 6.155 17 C -0.032 4.032 18 C -0.190 4.190 19 C -0.189 4.189 20 Br -0.015 7.015 21 C -0.118 4.118 22 C 0.145 3.855 23 H 0.253 0.747 24 H 0.017 0.983 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.341 0.659 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.209 0.791 33 H 0.155 0.845 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.015 0.985 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -20.734 11.270 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.181 4.181 12 C -0.011 4.011 13 N -0.313 5.313 14 C -0.002 4.002 15 C -0.002 4.002 16 O -0.050 6.050 17 C -0.101 4.101 18 C -0.211 4.211 19 C -0.271 4.271 20 Br 0.069 6.931 21 C -0.158 4.158 22 C 0.018 3.982 23 H 0.063 0.937 24 H 0.035 0.965 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.160 0.840 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.226 0.774 33 H 0.173 0.827 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.569 -20.394 10.984 23.217 hybrid contribution -0.351 0.530 0.303 0.705 sum -1.920 -19.864 11.287 22.927 Atomic orbital electron populations 1.70039 1.05266 1.25344 1.54218 1.25043 0.95286 0.98413 1.00981 0.86234 0.79423 0.83970 0.77234 1.20229 1.21775 1.21578 1.19240 0.92593 0.84826 1.41302 0.91638 1.44058 1.35836 1.01614 1.49949 1.20733 0.88655 0.98068 0.87759 1.22414 1.00297 0.95001 1.00344 1.21522 0.97156 0.91567 0.90838 1.60663 1.61986 0.99690 1.08977 1.20524 1.00849 0.86873 0.91927 1.22397 0.82472 0.96949 0.98339 1.84163 1.33639 1.47862 1.39290 1.24050 0.98616 0.98659 0.88728 1.21631 0.94131 1.02766 1.02541 1.21983 0.93972 1.08440 1.02660 1.96679 1.07745 1.90126 1.98532 1.22031 0.97286 0.98592 0.97889 1.20927 0.97599 0.86880 0.92823 0.93730 0.96519 0.89280 0.93468 0.91720 0.94181 0.84038 0.91514 0.88628 0.77425 0.82699 0.91610 0.93498 0.96720 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.87 2.99 -172.31 -0.52 -15.38 16 10 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 11 C -0.14 -2.67 5.36 -26.61 -0.14 -2.82 16 12 C 0.10 1.63 2.46 -67.67 -0.17 1.47 16 13 N -0.68 -9.87 6.30 -107.94 -0.68 -10.55 16 14 C 0.13 1.60 5.81 -4.97 -0.03 1.57 16 15 C 0.05 0.65 6.84 -35.60 -0.24 0.41 16 16 O -0.16 -1.85 10.65 5.60 0.06 -1.79 16 17 C -0.03 -0.29 12.09 29.42 0.36 0.07 16 18 C -0.19 -1.83 10.91 -39.68 -0.43 -2.26 16 19 C -0.19 -2.17 6.60 -39.67 -0.26 -2.44 16 20 Br -0.01 -0.16 33.49 -68.01 -2.28 -2.44 16 21 C -0.12 -2.10 5.59 -26.61 -0.15 -2.25 16 22 C 0.14 3.04 6.52 -3.71 -0.02 3.02 16 23 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 2.37 6.07 -51.93 -0.31 2.06 16 26 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.04 0.68 7.80 -51.93 -0.40 0.28 16 29 H 0.34 4.83 8.32 -39.30 -0.33 4.51 16 30 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 31 H 0.10 1.17 7.41 -51.93 -0.38 0.79 16 32 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.73 7.42 -51.93 -0.39 0.35 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -29.91 323.09 -9.43 -39.34 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.13 Total: 1.05 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.34 Total: -6.21 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.57 Total: -51.56 kcal Atomic # 8 Polarization: -1.85 SS G_CDS: 0.06 Total: -1.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -2.28 Total: -2.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.91 -9.43 -39.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735321308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.324 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds