Wall clock time and date at job start Tue Mar 31 2020 15:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00484 * 2 1 4 4 O 1.20824 * 119.99510 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00034 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.46707 * 54.99970 * 5 3 2 7 7 O 1.45202 * 109.46824 * 174.99795 * 5 3 2 8 8 C 1.34228 * 117.00045 * 269.99830 * 7 5 3 9 9 O 1.20826 * 119.99922 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99868 * 180.02562 * 8 7 5 11 11 S 1.80999 * 109.47106 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00033 * 180.02562 * 11 10 8 13 13 H 1.07995 * 119.99885 * 0.02562 * 12 11 10 14 14 C 1.38805 * 119.99993 * 179.97438 * 12 11 10 15 15 N 1.31627 * 120.00042 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99988 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47117 * 89.99814 * 16 14 12 18 18 H 1.48493 * 109.46967 * 209.99695 * 16 14 12 19 19 H 1.48496 * 109.47110 * 329.99998 * 16 14 12 20 20 C 1.50696 * 109.47085 * 294.99774 * 5 3 2 21 21 C 1.38248 * 119.97128 * 100.00033 * 20 5 3 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 5 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38197 * 119.97511 * 359.47283 * 25 23 22 27 27 H 1.08999 * 109.47350 * 300.00511 * 1 2 3 28 28 H 1.09002 * 109.46410 * 60.00197 * 1 2 3 29 29 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47472 * 300.00151 * 10 8 7 31 31 H 1.08996 * 109.46993 * 60.00408 * 10 8 7 32 32 H 0.97001 * 120.00621 * 180.02562 * 15 14 12 33 33 H 1.08002 * 119.98915 * 359.97438 * 21 20 5 34 34 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 35 35 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 36 36 H 1.07994 * 119.98821 * 180.29814 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5665 1.2747 0.0006 6 1 3.9603 0.7049 -0.8410 7 8 3.9785 2.6619 -0.1189 8 6 4.1574 3.1397 -1.3604 9 8 3.9752 2.4227 -2.3158 10 6 4.5854 4.5703 -1.5628 11 16 4.7388 4.9094 -3.3341 12 6 5.2362 6.5989 -3.2803 13 1 5.3551 7.0967 -2.3293 14 6 5.4763 7.2896 -4.4600 15 7 5.3329 6.6824 -5.6191 16 14 6.0043 9.0805 -4.4029 17 1 7.4863 9.1581 -4.3471 18 1 5.5176 9.7791 -5.6195 19 1 5.4290 9.7280 -3.1968 20 6 4.0989 0.7016 1.2886 21 6 4.5933 -0.5891 1.3180 22 6 5.0824 -1.1156 2.4984 23 6 5.0767 -0.3500 3.6521 24 9 5.5540 -0.8638 4.8068 25 6 4.5760 0.9406 3.6227 26 6 4.0927 1.4670 2.4398 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.8406 5.2373 -1.1287 31 1 5.5471 4.7341 -1.0766 32 1 5.5010 7.1649 -6.4436 33 1 4.5974 -1.1862 0.4181 34 1 5.4690 -2.1237 2.5211 35 1 4.5673 1.5373 4.5230 36 1 3.7066 2.4753 2.4156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735528506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:11 Heat of formation + Delta-G solvation = -182.909393 kcal Electronic energy + Delta-G solvation = -24628.530636 eV Core-core repulsion = 20505.363503 eV Total energy + Delta-G solvation = -4123.167133 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.24567 -41.27044 -39.89451 -39.27045 -36.86581 -36.15182 -32.63124 -32.50685 -31.54341 -29.79532 -28.59172 -26.72361 -25.56532 -23.55880 -22.71227 -21.88041 -20.57821 -18.34786 -18.18822 -17.93971 -17.60756 -17.13061 -16.84705 -16.38901 -16.09958 -15.92328 -15.58518 -14.98440 -14.86303 -14.34316 -14.16385 -14.00910 -13.89184 -13.51372 -13.36904 -12.86237 -12.77408 -12.65143 -12.55253 -12.20651 -11.95582 -11.47045 -11.38144 -11.12904 -11.08560 -11.03161 -10.84363 -10.52427 -10.22891 -9.93694 -9.49354 -9.13448 -9.04811 -8.40622 -6.63569 -6.29494 -4.02592 0.59349 0.85457 1.89225 1.94876 2.45396 2.71433 3.14048 3.19774 3.25557 3.29410 3.46921 3.85096 4.06371 4.12875 4.32590 4.45392 4.54713 4.68284 4.86621 4.88888 4.91376 4.97986 5.06634 5.12274 5.29599 5.42804 5.47669 5.54833 5.71871 5.72162 5.80338 6.01435 6.02862 6.06013 6.36198 6.44846 7.43457 7.53594 7.92872 8.28325 9.16105 10.78041 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.002811 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.640510 B = 9957.672314 C =11056.968868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.454 3.546 4 O -0.481 6.481 5 C 0.144 3.856 6 H 0.134 0.866 7 O -0.326 6.326 8 C 0.484 3.516 9 O -0.482 6.482 10 C -0.126 4.126 11 S -0.056 6.056 12 C -0.536 4.536 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.867 5.867 16 Si 0.922 3.078 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.271 1.271 20 C -0.105 4.105 21 C -0.058 4.058 22 C -0.155 4.155 23 C 0.110 3.890 24 F -0.138 7.138 25 C -0.156 4.156 26 C -0.055 4.055 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.270 0.730 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 -16.409 17.606 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.294 3.706 4 O -0.366 6.366 5 C 0.087 3.913 6 H 0.151 0.849 7 O -0.244 6.244 8 C 0.325 3.675 9 O -0.366 6.366 10 C -0.274 4.274 11 S 0.171 5.829 12 C -0.684 4.684 13 H 0.095 0.905 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.748 3.252 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.195 1.195 20 C -0.105 4.105 21 C -0.076 4.076 22 C -0.174 4.174 23 C 0.091 3.909 24 F -0.116 7.116 25 C -0.174 4.174 26 C -0.073 4.073 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.665 -17.032 16.270 24.012 hybrid contribution 0.328 1.851 1.178 2.219 sum -4.337 -15.181 17.448 23.531 Atomic orbital electron populations 1.23332 0.75686 1.03899 1.02902 1.86461 1.23830 1.32489 1.84045 1.23675 0.91557 0.82184 0.73173 1.90734 1.66285 1.36166 1.43459 1.20496 0.87603 0.84036 0.99198 0.84883 1.86726 1.78351 1.26088 1.33200 1.23572 0.73216 0.90704 0.80009 1.90677 1.46191 1.58674 1.41082 1.23324 1.05274 0.89942 1.08863 1.85424 1.89526 1.14968 0.93024 1.22838 1.53832 0.95985 0.95779 0.90485 1.25005 0.94732 0.99322 0.94424 1.70004 1.45629 1.37085 0.97514 0.86107 0.78882 0.82248 0.77941 1.20159 1.20703 1.19544 1.19195 1.03315 0.95166 0.92849 1.20853 0.94670 0.93789 0.98303 1.21091 1.03555 1.01188 0.91517 1.17827 0.97998 0.92998 0.82077 1.91518 1.85789 1.87081 1.47253 1.21173 1.01918 0.94475 0.99872 1.21000 0.95624 1.00151 0.90543 0.91755 0.91498 0.87762 0.87453 0.87529 0.92031 0.83977 0.84021 0.84139 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.10 10.55 -39.25 -0.41 -4.52 16 3 C 0.45 6.45 7.23 36.01 0.26 6.71 16 4 O -0.48 -8.30 16.26 -25.39 -0.41 -8.71 16 5 C 0.14 1.90 2.67 -29.03 -0.08 1.83 16 6 H 0.13 1.67 7.02 -51.93 -0.36 1.30 16 7 O -0.33 -5.14 8.75 -45.90 -0.40 -5.54 16 8 C 0.48 9.19 7.94 36.00 0.29 9.48 16 9 O -0.48 -10.27 15.08 -18.75 -0.28 -10.55 16 10 C -0.13 -2.56 6.27 36.00 0.23 -2.33 16 11 S -0.06 -1.47 20.58 -107.50 -2.21 -3.68 16 12 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 13 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -25.61 13.22 55.49 0.73 -24.88 16 16 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 C -0.10 -1.11 4.95 -104.62 -0.52 -1.63 16 21 C -0.06 -0.49 9.67 -39.59 -0.38 -0.88 16 22 C -0.15 -1.24 10.03 -39.52 -0.40 -1.63 16 23 C 0.11 1.00 7.30 -39.42 -0.29 0.72 16 24 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 25 C -0.16 -1.38 10.03 -39.51 -0.40 -1.78 16 26 C -0.06 -0.56 9.35 -39.59 -0.37 -0.93 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.11 2.06 8.14 -51.92 -0.42 1.64 16 31 H 0.11 1.95 8.14 -51.92 -0.42 1.52 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.14 0.91 8.04 -52.49 -0.42 0.48 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.14 1.44 7.78 -52.49 -0.41 1.03 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -34.02 349.31 -6.80 -40.82 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -3.70 Total: -1.22 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.39 Total: -1.72 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.73 Total: -24.88 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.51 Total: -29.32 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.02 -6.80 -40.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735528506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.089 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds