Wall clock time and date at job start Tue Mar 31 2020 15:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00484 * 2 1 4 4 O 1.20824 * 119.99510 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00034 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.46707 * 54.99970 * 5 3 2 7 7 O 1.45202 * 109.46824 * 174.99795 * 5 3 2 8 8 C 1.34228 * 117.00045 * 269.99830 * 7 5 3 9 9 O 1.20826 * 119.99922 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99868 * 180.02562 * 8 7 5 11 11 S 1.80999 * 109.47106 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00033 * 180.02562 * 11 10 8 13 13 H 1.07995 * 119.99885 * 0.02562 * 12 11 10 14 14 C 1.38805 * 119.99993 * 179.97438 * 12 11 10 15 15 N 1.31627 * 120.00042 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99988 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47117 * 89.99814 * 16 14 12 18 18 H 1.48493 * 109.46967 * 209.99695 * 16 14 12 19 19 H 1.48496 * 109.47110 * 329.99998 * 16 14 12 20 20 C 1.50696 * 109.47085 * 294.99774 * 5 3 2 21 21 C 1.38248 * 119.97128 * 100.00033 * 20 5 3 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 5 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38197 * 119.97511 * 359.47283 * 25 23 22 27 27 H 1.08999 * 109.47350 * 300.00511 * 1 2 3 28 28 H 1.09002 * 109.46410 * 60.00197 * 1 2 3 29 29 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47472 * 300.00151 * 10 8 7 31 31 H 1.08996 * 109.46993 * 60.00408 * 10 8 7 32 32 H 0.97001 * 120.00621 * 180.02562 * 15 14 12 33 33 H 1.08002 * 119.98915 * 359.97438 * 21 20 5 34 34 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 35 35 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 36 36 H 1.07994 * 119.98821 * 180.29814 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5665 1.2747 0.0006 6 1 3.9603 0.7049 -0.8410 7 8 3.9785 2.6619 -0.1189 8 6 4.1574 3.1397 -1.3604 9 8 3.9752 2.4227 -2.3158 10 6 4.5854 4.5703 -1.5628 11 16 4.7388 4.9094 -3.3341 12 6 5.2362 6.5989 -3.2803 13 1 5.3551 7.0967 -2.3293 14 6 5.4763 7.2896 -4.4600 15 7 5.3329 6.6824 -5.6191 16 14 6.0043 9.0805 -4.4029 17 1 7.4863 9.1581 -4.3471 18 1 5.5176 9.7791 -5.6195 19 1 5.4290 9.7280 -3.1968 20 6 4.0989 0.7016 1.2886 21 6 4.5933 -0.5891 1.3180 22 6 5.0824 -1.1156 2.4984 23 6 5.0767 -0.3500 3.6521 24 9 5.5540 -0.8638 4.8068 25 6 4.5760 0.9406 3.6227 26 6 4.0927 1.4670 2.4398 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.8406 5.2373 -1.1287 31 1 5.5471 4.7341 -1.0766 32 1 5.5010 7.1649 -6.4436 33 1 4.5974 -1.1862 0.4181 34 1 5.4690 -2.1237 2.5211 35 1 4.5673 1.5373 4.5230 36 1 3.7066 2.4753 2.4156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735528506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:11 Heat of formation + Delta-G solvation = -201.642414 kcal Electronic energy + Delta-G solvation = -24629.342961 eV Core-core repulsion = 20505.363503 eV Total energy + Delta-G solvation = -4123.979458 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.96398 -42.44675 -41.16433 -40.07757 -38.06063 -37.41164 -34.61747 -33.60150 -32.22798 -31.31400 -29.44839 -27.81108 -27.50682 -24.30712 -23.63035 -23.02789 -21.73911 -20.00024 -19.35710 -19.03667 -18.77261 -18.29939 -17.89278 -17.31797 -17.17701 -16.91349 -16.89869 -16.63804 -16.20010 -15.79861 -15.20932 -14.99501 -14.60617 -14.55696 -14.42950 -14.32244 -14.17183 -13.76990 -13.49233 -13.20422 -13.11220 -12.93693 -12.90052 -12.79604 -12.64917 -12.06977 -11.95782 -11.84812 -11.80393 -11.61353 -11.16259 -10.41242 -10.16394 -9.80778 -8.74914 -8.38204 -6.18065 -0.16965 0.18271 0.66956 0.80015 0.97007 1.33727 1.43435 1.46580 1.56692 1.83372 2.22930 2.49846 2.97151 3.06300 3.20447 3.25763 3.51055 3.54839 3.64419 3.84891 3.91453 4.12962 4.21659 4.23135 4.25530 4.34557 4.39762 4.63412 4.76413 4.85818 4.93186 5.05327 5.07125 5.13089 5.31746 5.40977 5.76336 6.17671 6.32520 6.49746 7.03724 8.71067 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.002811 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.640510 B = 9957.672314 C =11056.968868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.455 3.545 4 O -0.520 6.520 5 C 0.141 3.859 6 H 0.141 0.859 7 O -0.318 6.318 8 C 0.492 3.508 9 O -0.510 6.510 10 C -0.108 4.108 11 S -0.131 6.131 12 C -0.549 4.549 13 H 0.087 0.913 14 C 0.017 3.983 15 N -0.909 5.909 16 Si 1.000 3.000 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.259 1.259 20 C -0.118 4.118 21 C -0.054 4.054 22 C -0.147 4.147 23 C 0.103 3.897 24 F -0.141 7.141 25 C -0.155 4.155 26 C -0.066 4.066 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.143 0.857 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.273 0.727 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 -16.983 19.362 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.261 6.261 3 C 0.297 3.703 4 O -0.409 6.409 5 C 0.084 3.916 6 H 0.158 0.842 7 O -0.235 6.235 8 C 0.334 3.666 9 O -0.397 6.397 10 C -0.256 4.256 11 S 0.096 5.904 12 C -0.697 4.697 13 H 0.105 0.895 14 C -0.188 4.188 15 N -0.546 5.546 16 Si 0.821 3.179 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.183 1.183 20 C -0.118 4.118 21 C -0.071 4.071 22 C -0.166 4.166 23 C 0.084 3.916 24 F -0.120 7.120 25 C -0.174 4.174 26 C -0.084 4.084 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.182 0.818 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.191 -17.641 18.059 25.591 hybrid contribution 0.108 1.850 0.768 2.006 sum -4.083 -15.792 18.827 24.910 Atomic orbital electron populations 1.23678 0.73935 1.06371 1.02622 1.86456 1.25485 1.30932 1.83268 1.23893 0.91948 0.82344 0.72118 1.90716 1.67152 1.37434 1.45551 1.20797 0.87386 0.82316 1.01068 0.84176 1.86673 1.77894 1.28047 1.30912 1.23205 0.72674 0.90100 0.80601 1.90666 1.47532 1.59300 1.42209 1.23107 1.07055 0.91348 1.04098 1.85502 1.89851 1.15663 0.99424 1.23196 1.53758 0.96236 0.96476 0.89530 1.26108 0.94463 1.04399 0.93854 1.70154 1.46836 1.39205 0.98367 0.84933 0.78760 0.75870 0.78322 1.19110 1.20299 1.18297 1.19145 1.04849 0.96250 0.91584 1.21087 0.93628 0.92972 0.99457 1.21366 1.02443 1.02119 0.90641 1.18020 0.98032 0.93225 0.82357 1.91514 1.85839 1.87093 1.47521 1.21300 1.01343 0.94745 0.99976 1.21006 0.96326 1.00115 0.90988 0.91459 0.92448 0.83896 0.86251 0.85199 0.91805 0.81758 0.81453 0.82614 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -7.67 10.55 -51.40 -0.54 -8.21 16 3 C 0.45 12.80 7.23 71.24 0.52 13.32 16 4 O -0.52 -18.16 16.26 28.32 0.46 -17.70 16 5 C 0.14 3.64 2.67 29.10 0.08 3.72 16 6 H 0.14 3.42 7.02 -2.39 -0.02 3.40 16 7 O -0.32 -9.92 8.75 -45.05 -0.39 -10.32 16 8 C 0.49 18.71 7.94 71.23 0.57 19.28 16 9 O -0.51 -22.08 15.08 21.96 0.33 -21.75 16 10 C -0.11 -4.34 6.27 71.23 0.45 -3.90 16 11 S -0.13 -7.09 20.58 -56.49 -1.16 -8.25 16 12 C -0.55 -30.71 9.50 67.96 0.65 -30.06 16 13 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 14 C 0.02 0.95 5.49 84.86 0.47 1.41 16 15 N -0.91 -54.60 13.22 21.65 0.29 -54.31 16 16 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 20 C -0.12 -2.34 4.95 -19.86 -0.10 -2.44 16 21 C -0.05 -0.78 9.67 22.26 0.22 -0.57 16 22 C -0.15 -1.93 10.03 22.31 0.22 -1.71 16 23 C 0.10 1.65 7.30 22.38 0.16 1.81 16 24 F -0.14 -2.43 17.27 44.97 0.78 -1.65 16 25 C -0.16 -2.51 10.03 22.31 0.22 -2.29 16 26 C -0.07 -1.27 9.35 22.26 0.21 -1.06 16 27 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 28 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 29 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.12 4.53 8.14 -2.40 -0.02 4.51 16 31 H 0.13 4.61 8.14 -2.40 -0.02 4.59 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.16 1.60 8.04 -2.91 -0.02 1.58 16 34 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.14 2.73 7.78 -2.91 -0.02 2.70 16 Total: -1.00 -74.71 349.31 7.75 -66.96 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.12 Total: 11.22 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 4.85 Total: -0.86 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.29 Total: -54.31 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -0.14 Total: -57.99 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.16 Total: -8.25 kcal Total: -74.71 7.75 -66.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735528506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.685 kcal (2) G-P(sol) polarization free energy of solvation -74.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds