Wall clock time and date at job start Tue Mar 31 2020 15:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99953 * 2 1 4 4 H 1.48501 * 109.46968 * 274.74557 * 3 2 1 5 5 H 1.48506 * 109.47261 * 34.74829 * 3 2 1 6 6 H 1.48501 * 109.47307 * 154.74935 * 3 2 1 7 7 C 1.37877 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99945 * 354.58208 * 7 2 1 9 9 C 1.50697 * 120.00461 * 174.85326 * 7 2 1 10 10 C 1.52999 * 115.54920 * 98.35263 * 9 7 2 11 11 O 1.45200 * 109.47484 * 305.21342 * 10 9 7 12 12 C 1.34227 * 116.99963 * 184.79233 * 11 10 9 13 13 O 1.20826 * 120.00037 * 5.12422 * 12 11 10 14 14 C 1.50700 * 120.00123 * 185.12491 * 12 11 10 15 15 O 1.42904 * 109.47104 * 185.10652 * 14 12 11 16 16 C 1.35968 * 116.99437 * 180.02562 * 15 14 12 17 17 C 1.38687 * 120.03789 * 359.71679 * 16 15 14 18 18 C 1.38157 * 119.97737 * 179.74709 * 17 16 15 19 19 C 1.38464 * 120.05432 * 0.55742 * 18 17 16 20 20 F 1.35103 * 119.96456 * 179.72138 * 19 18 17 21 21 C 1.38436 * 120.07052 * 359.69642 * 19 18 17 22 22 C 1.38262 * 120.01227 * 0.02562 * 21 19 18 23 23 Cl 1.73603 * 120.02034 * 179.97438 * 22 21 19 24 24 C 1.53004 * 117.49818 * 312.65443 * 9 7 2 25 25 C 1.52999 * 117.50090 * 244.03227 * 9 7 2 26 26 H 0.97000 * 120.00019 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46823 * 65.21405 * 10 9 7 28 28 H 1.09004 * 109.46861 * 185.20675 * 10 9 7 29 29 H 1.09002 * 109.46731 * 305.10198 * 14 12 11 30 30 H 1.09000 * 109.47280 * 65.10247 * 14 12 11 31 31 H 1.07998 * 120.00522 * 0.03099 * 17 16 15 32 32 H 1.08005 * 119.97250 * 180.27716 * 18 17 16 33 33 H 1.07996 * 119.99055 * 180.02562 * 21 19 18 34 34 H 1.09007 * 117.49461 * 359.97438 * 24 9 7 35 35 H 1.08990 * 117.50034 * 145.01693 * 24 9 7 36 36 H 1.08999 * 117.49478 * 214.97204 * 25 9 7 37 37 H 1.09000 * 117.49584 * 359.96991 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3963 2.1043 -1.3953 5 1 1.5003 2.6216 0.7980 6 1 3.5933 1.4133 0.5972 7 6 2.0046 -1.1940 -0.0005 8 1 1.4682 -2.1274 0.0874 9 6 3.5070 -1.1967 -0.1176 10 6 4.2713 -1.3375 1.2003 11 8 3.8401 -0.3026 2.1230 12 6 4.4870 -0.2242 3.2964 13 8 5.4430 -0.9323 3.5077 14 6 4.0211 0.7469 4.3504 15 8 4.9326 0.7291 5.4508 16 6 4.6555 1.5544 6.4952 17 6 3.5330 2.3681 6.4581 18 6 3.2497 3.2025 7.5222 19 6 4.0918 3.2354 8.6209 20 9 3.8161 4.0561 9.6581 21 6 5.2157 2.4279 8.6579 22 6 5.4988 1.5877 7.5970 23 17 6.9084 0.5755 7.6430 24 6 4.1322 -0.3236 -1.2075 25 6 4.1176 -1.8458 -1.3613 26 1 -0.4850 0.8400 0.0004 27 1 4.0706 -2.3173 1.6337 28 1 5.3402 -1.2351 1.0131 29 1 3.9817 1.7507 3.9275 30 1 3.0283 0.4591 4.6962 31 1 2.8782 2.3462 5.5996 32 1 2.3731 3.8328 7.4952 33 1 5.8713 2.4543 9.5156 34 1 3.4567 0.2524 -1.8401 35 1 5.0881 0.1507 -0.9857 36 1 5.0640 -2.3728 -1.2406 37 1 3.4325 -2.2713 -2.0946 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744275394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:36 Heat of formation + Delta-G solvation = -108.517276 kcal Electronic energy + Delta-G solvation = -24839.929425 eV Core-core repulsion = 20717.944470 eV Total energy + Delta-G solvation = -4121.984955 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.21818 -40.77965 -39.84130 -37.83535 -37.09155 -36.63204 -35.52680 -32.13501 -31.53474 -30.53071 -28.87652 -26.93786 -25.34747 -23.69984 -22.84257 -21.87341 -20.77670 -19.22527 -18.95257 -17.86157 -17.57654 -17.02088 -16.80487 -16.56800 -15.97927 -15.77903 -15.34129 -15.24906 -14.86498 -14.69807 -14.21255 -13.86906 -13.75883 -13.50122 -13.01476 -12.74313 -12.70521 -12.43780 -12.07240 -11.77744 -11.58568 -11.26282 -11.25819 -11.17196 -10.98373 -10.52247 -10.37877 -10.14694 -10.08634 -9.53681 -9.46271 -9.19825 -8.62761 -8.58378 -8.50854 -6.16194 -4.20959 0.53706 0.67816 1.77029 2.11463 2.39597 2.98069 3.23700 3.32399 3.46078 3.51653 3.87094 4.22231 4.31841 4.41728 4.56022 4.66556 4.82041 4.83894 4.88481 5.03299 5.11068 5.14814 5.42742 5.56978 5.59781 5.62017 5.80700 5.89523 6.02256 6.13340 6.20289 6.34172 6.55488 6.71319 6.75921 6.95327 7.01736 7.63217 8.08429 8.39564 8.84435 9.47525 10.94847 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.003177 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.020183 B = 8810.306105 C =10053.695989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.084 3.916 3 Si 0.883 3.117 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.243 1.243 7 C -0.490 4.490 8 H 0.078 0.922 9 C -0.005 4.005 10 C 0.112 3.888 11 O -0.317 6.317 12 C 0.457 3.543 13 O -0.498 6.498 14 C 0.060 3.940 15 O -0.278 6.278 16 C 0.136 3.864 17 C -0.170 4.170 18 C -0.103 4.103 19 C 0.071 3.929 20 F -0.135 7.135 21 C -0.108 4.108 22 C -0.042 4.042 23 Cl -0.037 7.037 24 C -0.201 4.201 25 C -0.168 4.168 26 H 0.265 0.735 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.870 6.746 15.043 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.119 4.119 3 Si 0.712 3.288 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.167 1.167 7 C -0.527 4.527 8 H 0.096 0.904 9 C -0.006 4.006 10 C 0.039 3.961 11 O -0.232 6.232 12 C 0.298 3.702 13 O -0.387 6.387 14 C -0.015 4.015 15 O -0.190 6.190 16 C 0.089 3.911 17 C -0.189 4.189 18 C -0.122 4.122 19 C 0.052 3.948 20 F -0.113 7.113 21 C -0.127 4.127 22 C -0.070 4.070 23 Cl -0.008 7.008 24 C -0.238 4.238 25 C -0.205 4.205 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.269 6.420 15.058 18.812 hybrid contribution 0.267 1.034 0.063 1.070 sum 9.536 7.454 15.122 19.369 Atomic orbital electron populations 1.69911 1.06521 1.27214 1.49693 1.24966 0.94489 0.99163 0.93233 0.86830 0.81591 0.82781 0.77644 1.21358 1.22539 1.16653 1.20152 0.86104 0.94781 1.51650 0.90351 1.19382 0.95864 1.00776 0.84544 1.22904 0.96488 0.88012 0.88720 1.86692 1.58248 1.53719 1.24555 1.22651 0.81646 0.82617 0.83254 1.90671 1.26451 1.42226 1.79318 1.22093 0.93751 1.00451 0.85252 1.86193 1.48864 1.58493 1.25474 1.18686 0.93520 0.91284 0.87630 1.21224 0.97913 0.98574 1.01216 1.21075 0.99844 0.99403 0.91920 1.17309 0.96565 0.94267 0.86680 1.91524 1.93492 1.70125 1.56176 1.20814 0.97533 0.95596 0.98778 1.19830 0.92867 0.99711 0.94601 1.98409 1.37415 1.66652 1.98340 1.23012 1.01356 0.93587 1.05882 1.22911 1.01027 0.94597 1.01962 0.92574 0.91304 0.93036 0.87535 0.86883 0.82921 0.83482 0.82958 0.89129 0.90574 0.90659 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 13.96 55.43 0.77 -25.30 16 2 C 0.08 2.30 5.46 -17.82 -0.10 2.20 16 3 Si 0.88 20.65 23.62 -169.99 -4.01 16.63 16 4 H -0.29 -6.71 6.99 56.52 0.39 -6.32 16 5 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.24 -5.33 5.30 56.52 0.30 -5.03 16 7 C -0.49 -13.00 9.22 -34.44 -0.32 -13.32 16 8 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 9 C 0.00 -0.10 1.39 -155.66 -0.22 -0.32 16 10 C 0.11 2.27 5.45 37.16 0.20 2.47 16 11 O -0.32 -6.41 7.44 -39.25 -0.29 -6.70 16 12 C 0.46 8.12 8.02 36.01 0.29 8.41 16 13 O -0.50 -9.97 16.17 -25.46 -0.41 -10.39 16 14 C 0.06 0.80 5.33 36.01 0.19 0.99 16 15 O -0.28 -3.88 9.13 -39.54 -0.36 -4.24 16 16 C 0.14 1.59 6.68 -39.21 -0.26 1.32 16 17 C -0.17 -1.60 9.04 -39.45 -0.36 -1.96 16 18 C -0.10 -0.88 10.02 -39.53 -0.40 -1.28 16 19 C 0.07 0.66 7.30 -39.43 -0.29 0.38 16 20 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 21 C -0.11 -1.00 9.80 -39.50 -0.39 -1.39 16 22 C -0.04 -0.47 6.33 -39.37 -0.25 -0.72 16 23 Cl -0.04 -0.44 28.50 -51.86 -1.48 -1.92 16 24 C -0.20 -4.10 7.15 -26.73 -0.19 -4.29 16 25 C -0.17 -3.20 9.95 -26.73 -0.27 -3.46 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.05 0.97 7.92 -51.93 -0.41 0.56 16 29 H 0.11 1.17 7.65 -51.93 -0.40 0.77 16 30 H 0.11 1.24 7.67 -51.93 -0.40 0.84 16 31 H 0.15 1.18 6.30 -52.49 -0.33 0.85 16 32 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.09 1.96 6.17 -51.92 -0.32 1.64 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -31.13 337.37 -7.06 -38.20 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.06 Total: 0.86 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.34 Total: -10.97 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.77 Total: -25.30 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -1.06 Total: -21.32 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.01 Total: 16.63 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.48 Total: -1.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.13 -7.06 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.321 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds