Wall clock time and date at job start Tue Mar 31 2020 15:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99953 * 2 1 4 4 H 1.48501 * 109.46968 * 274.74557 * 3 2 1 5 5 H 1.48506 * 109.47261 * 34.74829 * 3 2 1 6 6 H 1.48501 * 109.47307 * 154.74935 * 3 2 1 7 7 C 1.37877 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99945 * 354.58208 * 7 2 1 9 9 C 1.50697 * 120.00461 * 174.85326 * 7 2 1 10 10 C 1.52999 * 115.54920 * 98.35263 * 9 7 2 11 11 O 1.45200 * 109.47484 * 305.21342 * 10 9 7 12 12 C 1.34227 * 116.99963 * 184.79233 * 11 10 9 13 13 O 1.20826 * 120.00037 * 5.12422 * 12 11 10 14 14 C 1.50700 * 120.00123 * 185.12491 * 12 11 10 15 15 O 1.42904 * 109.47104 * 185.10652 * 14 12 11 16 16 C 1.35968 * 116.99437 * 180.02562 * 15 14 12 17 17 C 1.38687 * 120.03789 * 359.71679 * 16 15 14 18 18 C 1.38157 * 119.97737 * 179.74709 * 17 16 15 19 19 C 1.38464 * 120.05432 * 0.55742 * 18 17 16 20 20 F 1.35103 * 119.96456 * 179.72138 * 19 18 17 21 21 C 1.38436 * 120.07052 * 359.69642 * 19 18 17 22 22 C 1.38262 * 120.01227 * 0.02562 * 21 19 18 23 23 Cl 1.73603 * 120.02034 * 179.97438 * 22 21 19 24 24 C 1.53004 * 117.49818 * 312.65443 * 9 7 2 25 25 C 1.52999 * 117.50090 * 244.03227 * 9 7 2 26 26 H 0.97000 * 120.00019 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46823 * 65.21405 * 10 9 7 28 28 H 1.09004 * 109.46861 * 185.20675 * 10 9 7 29 29 H 1.09002 * 109.46731 * 305.10198 * 14 12 11 30 30 H 1.09000 * 109.47280 * 65.10247 * 14 12 11 31 31 H 1.07998 * 120.00522 * 0.03099 * 17 16 15 32 32 H 1.08005 * 119.97250 * 180.27716 * 18 17 16 33 33 H 1.07996 * 119.99055 * 180.02562 * 21 19 18 34 34 H 1.09007 * 117.49461 * 359.97438 * 24 9 7 35 35 H 1.08990 * 117.50034 * 145.01693 * 24 9 7 36 36 H 1.08999 * 117.49478 * 214.97204 * 25 9 7 37 37 H 1.09000 * 117.49584 * 359.96991 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3963 2.1043 -1.3953 5 1 1.5003 2.6216 0.7980 6 1 3.5933 1.4133 0.5972 7 6 2.0046 -1.1940 -0.0005 8 1 1.4682 -2.1274 0.0874 9 6 3.5070 -1.1967 -0.1176 10 6 4.2713 -1.3375 1.2003 11 8 3.8401 -0.3026 2.1230 12 6 4.4870 -0.2242 3.2964 13 8 5.4430 -0.9323 3.5077 14 6 4.0211 0.7469 4.3504 15 8 4.9326 0.7291 5.4508 16 6 4.6555 1.5544 6.4952 17 6 3.5330 2.3681 6.4581 18 6 3.2497 3.2025 7.5222 19 6 4.0918 3.2354 8.6209 20 9 3.8161 4.0561 9.6581 21 6 5.2157 2.4279 8.6579 22 6 5.4988 1.5877 7.5970 23 17 6.9084 0.5755 7.6430 24 6 4.1322 -0.3236 -1.2075 25 6 4.1176 -1.8458 -1.3613 26 1 -0.4850 0.8400 0.0004 27 1 4.0706 -2.3173 1.6337 28 1 5.3402 -1.2351 1.0131 29 1 3.9817 1.7507 3.9275 30 1 3.0283 0.4591 4.6962 31 1 2.8782 2.3462 5.5996 32 1 2.3731 3.8328 7.4952 33 1 5.8713 2.4543 9.5156 34 1 3.4567 0.2524 -1.8401 35 1 5.0881 0.1507 -0.9857 36 1 5.0640 -2.3728 -1.2406 37 1 3.4325 -2.2713 -2.0946 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744275394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:36 Heat of formation + Delta-G solvation = -125.483601 kcal Electronic energy + Delta-G solvation = -24840.665140 eV Core-core repulsion = 20717.944470 eV Total energy + Delta-G solvation = -4122.720671 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.95036 -41.84166 -41.04199 -39.00010 -38.41685 -37.46527 -37.03133 -34.18632 -32.27273 -31.45364 -29.91448 -28.44642 -27.23655 -24.50607 -23.68469 -23.39785 -22.04912 -20.99323 -19.83617 -18.77635 -18.70009 -18.46196 -17.97545 -17.91020 -17.12066 -16.90073 -16.64433 -16.37713 -15.97148 -15.71431 -15.48000 -14.94357 -14.69417 -14.61479 -14.49365 -14.27760 -13.88136 -13.79005 -13.40845 -13.02394 -12.85702 -12.65809 -12.34669 -12.11785 -12.07595 -12.03125 -12.01443 -11.67851 -11.64225 -11.39193 -10.91285 -10.62137 -10.29154 -10.18901 -9.31105 -8.23993 -6.33189 -0.17816 -0.07533 0.90345 1.03906 1.05928 1.43627 1.48029 1.67267 2.25089 2.33983 2.47626 3.06463 3.13804 3.16831 3.48016 3.53258 3.73580 3.88035 3.91917 4.00082 4.01101 4.08677 4.20853 4.34898 4.41086 4.43952 4.62916 4.73914 4.81122 4.90253 4.93077 4.98385 5.14224 5.41219 5.42560 5.53125 5.71519 5.91423 6.29400 6.65851 6.76362 7.39230 8.91042 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.003177 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.020183 B = 8810.306105 C =10053.695989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.033 3.967 3 Si 0.941 3.059 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.218 1.218 7 C -0.492 4.492 8 H 0.032 0.968 9 C -0.032 4.032 10 C 0.116 3.884 11 O -0.335 6.335 12 C 0.455 3.545 13 O -0.526 6.526 14 C 0.063 3.937 15 O -0.301 6.301 16 C 0.118 3.882 17 C -0.166 4.166 18 C -0.096 4.096 19 C 0.068 3.932 20 F -0.136 7.136 21 C -0.104 4.104 22 C -0.056 4.056 23 Cl -0.052 7.052 24 C -0.196 4.196 25 C -0.150 4.150 26 H 0.266 0.734 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.168 0.832 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.149 8.588 15.618 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.140 1.140 7 C -0.530 4.530 8 H 0.050 0.950 9 C -0.033 4.033 10 C 0.043 3.957 11 O -0.251 6.251 12 C 0.299 3.701 13 O -0.416 6.416 14 C -0.012 4.012 15 O -0.214 6.214 16 C 0.071 3.929 17 C -0.185 4.185 18 C -0.115 4.115 19 C 0.048 3.952 20 F -0.115 7.115 21 C -0.123 4.123 22 C -0.084 4.084 23 Cl -0.023 7.023 24 C -0.233 4.233 25 C -0.187 4.187 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.190 0.810 32 H 0.190 0.810 33 H 0.186 0.814 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.565 8.253 15.645 20.604 hybrid contribution -0.188 0.381 -0.072 0.431 sum 10.377 8.634 15.573 20.609 Atomic orbital electron populations 1.70055 1.08496 1.28171 1.51990 1.25782 0.95038 1.02846 0.92870 0.85906 0.81434 0.78223 0.77767 1.21329 1.22088 1.14012 1.20300 0.88872 0.92998 1.50797 0.94987 1.19292 0.93450 1.04084 0.86507 1.22733 0.97066 0.88101 0.87843 1.86664 1.59001 1.53734 1.25678 1.23449 0.80842 0.82781 0.83057 1.90652 1.27727 1.43602 1.79631 1.22224 0.94207 1.00445 0.84317 1.86143 1.49507 1.59624 1.26131 1.18896 0.94706 0.91985 0.87264 1.21436 0.97209 0.97800 1.02039 1.21363 1.00173 0.98907 0.91008 1.17439 0.96683 0.94136 0.86895 1.91525 1.93485 1.70157 1.56344 1.20954 0.97781 0.94878 0.98716 1.19978 0.92752 1.00337 0.95306 1.98399 1.38284 1.67226 1.98401 1.23049 1.01864 0.94267 1.04075 1.22979 1.01956 0.94311 0.99426 0.92533 0.91847 0.91076 0.84713 0.84566 0.81007 0.80976 0.81432 0.90620 0.87817 0.87113 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.55 13.96 21.45 0.30 -56.25 16 2 C 0.03 1.80 5.46 84.65 0.46 2.26 16 3 Si 0.94 41.71 23.62 68.60 1.62 43.33 16 4 H -0.29 -12.61 6.99 99.48 0.69 -11.91 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.22 -8.67 5.30 99.48 0.53 -8.15 16 7 C -0.49 -26.65 9.22 25.60 0.24 -26.41 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C -0.03 -1.39 1.39 -52.93 -0.07 -1.46 16 10 C 0.12 4.50 5.45 71.98 0.39 4.89 16 11 O -0.34 -12.93 7.44 -51.39 -0.38 -13.31 16 12 C 0.46 15.40 8.02 71.24 0.57 15.97 16 13 O -0.53 -20.51 16.17 28.38 0.46 -20.05 16 14 C 0.06 1.52 5.33 71.24 0.38 1.90 16 15 O -0.30 -7.90 9.13 -74.16 -0.68 -8.58 16 16 C 0.12 2.52 6.68 22.51 0.15 2.67 16 17 C -0.17 -2.63 9.04 22.36 0.20 -2.42 16 18 C -0.10 -1.33 10.02 22.30 0.22 -1.11 16 19 C 0.07 1.10 7.30 22.37 0.16 1.26 16 20 F -0.14 -2.33 17.27 44.97 0.78 -1.55 16 21 C -0.10 -1.75 9.80 22.32 0.22 -1.53 16 22 C -0.06 -1.18 6.33 22.41 0.14 -1.04 16 23 Cl -0.05 -1.20 28.50 -2.72 -0.08 -1.28 16 24 C -0.20 -7.42 7.15 30.60 0.22 -7.20 16 25 C -0.15 -5.37 9.95 30.59 0.30 -5.06 16 26 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.07 2.47 7.92 -2.38 -0.02 2.45 16 29 H 0.14 2.46 7.65 -2.39 -0.02 2.44 16 30 H 0.14 2.60 7.67 -2.39 -0.02 2.59 16 31 H 0.17 1.99 6.30 -2.91 -0.02 1.97 16 32 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.08 3.11 6.17 -2.38 -0.01 3.09 16 35 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -69.17 337.37 6.53 -62.64 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.92 Total: 12.33 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 3.59 Total: -17.28 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.30 Total: -56.25 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.60 Total: -41.94 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.62 Total: 43.33 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -69.17 6.53 -62.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.842 kcal (2) G-P(sol) polarization free energy of solvation -69.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds