Wall clock time and date at job start Tue Mar 31 2020 15:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34226 * 116.99879 * 2 1 4 4 O 1.20830 * 120.00398 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99958 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.46953 * 304.99658 * 5 3 2 7 7 O 1.45196 * 109.47171 * 184.99614 * 5 3 2 8 8 C 1.34230 * 116.99838 * 90.00087 * 7 5 3 9 9 O 1.20827 * 120.00234 * 359.97438 * 8 7 5 10 10 C 1.50707 * 119.99686 * 179.97438 * 8 7 5 11 11 S 1.81000 * 109.46854 * 179.97438 * 10 8 7 12 12 C 1.76198 * 99.99955 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99933 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00086 * 180.02562 * 12 11 10 15 15 N 1.31627 * 119.99949 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99870 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47196 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46997 * 119.99924 * 16 14 12 19 19 H 1.48500 * 109.46994 * 239.99896 * 16 14 12 20 20 C 1.50699 * 109.47009 * 64.99079 * 5 3 2 21 21 C 1.38228 * 120.00852 * 95.26549 * 20 5 3 22 22 C 1.38229 * 120.02156 * 180.29817 * 21 20 5 23 23 C 1.38262 * 120.05298 * 359.71232 * 22 21 20 24 24 C 1.38177 * 120.02678 * 0.02562 * 23 22 21 25 25 C 1.38437 * 120.01912 * 275.00270 * 20 5 3 26 26 F 1.35104 * 120.02166 * 359.97438 * 25 20 5 27 27 H 1.09001 * 109.47109 * 300.00508 * 1 2 3 28 28 H 1.09002 * 109.46911 * 60.00204 * 1 2 3 29 29 H 1.08994 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46804 * 299.99592 * 10 8 7 31 31 H 1.09001 * 109.47054 * 59.99665 * 10 8 7 32 32 H 0.97007 * 119.99708 * 179.97438 * 15 14 12 33 33 H 1.07993 * 119.98806 * 359.97438 * 21 20 5 34 34 H 1.08001 * 119.96987 * 179.70237 * 22 21 20 35 35 H 1.08002 * 119.98761 * 179.97438 * 23 22 21 36 36 H 1.07996 * 120.01639 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9604 0.7051 0.8411 7 8 3.9784 2.6620 0.1188 8 6 4.1572 3.1399 1.3603 9 8 3.9751 2.4230 2.3157 10 6 4.5852 4.5707 1.5625 11 16 4.7386 4.9099 3.3338 12 6 5.2345 6.5998 3.2799 13 1 5.3520 7.0981 2.3288 14 6 5.4741 7.2908 4.4596 15 7 5.3304 6.6837 5.6186 16 14 5.9991 9.0826 4.4024 17 1 6.0869 9.5278 2.9884 18 1 5.0014 9.9139 5.1226 19 1 7.3269 9.2302 5.0507 20 6 4.0989 0.7016 -1.2885 21 6 4.3891 1.5383 -2.3499 22 6 4.8718 1.0121 -3.5334 23 6 5.0705 -0.3508 -3.6552 24 6 4.7862 -1.1885 -2.5937 25 6 4.3029 -0.6625 -1.4074 26 9 4.0251 -1.4806 -0.3687 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 5.5469 4.7344 1.0762 31 1 3.8403 5.2376 1.1283 32 1 5.4982 7.1666 6.4431 33 1 4.2337 2.6028 -2.2561 34 1 5.0937 1.6660 -4.3638 35 1 5.4473 -0.7608 -4.5805 36 1 4.9419 -2.2530 -2.6888 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744696318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:15 Heat of formation + Delta-G solvation = -180.528371 kcal Electronic energy + Delta-G solvation = -25094.418056 eV Core-core repulsion = 20971.354171 eV Total energy + Delta-G solvation = -4123.063885 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.16548 -41.18894 -39.87175 -39.21208 -36.84957 -36.16025 -32.92870 -32.49894 -30.92560 -29.86667 -28.68123 -26.85809 -25.56217 -23.29130 -22.82081 -21.79222 -20.54928 -18.33721 -18.24511 -17.78225 -17.58076 -17.05721 -16.78272 -16.36517 -16.10510 -15.78025 -15.61978 -15.11783 -14.85770 -14.46281 -14.15724 -13.89803 -13.85774 -13.46922 -13.15884 -12.74536 -12.68465 -12.65755 -12.56362 -12.20981 -11.75491 -11.50523 -11.43526 -11.10260 -11.10163 -10.98373 -10.83127 -10.56279 -10.21765 -9.91820 -9.37093 -9.13565 -9.03616 -8.38768 -6.62537 -6.28713 -4.01729 0.65073 0.85236 1.92196 1.96353 2.46187 2.74703 3.17688 3.19437 3.26213 3.29719 3.44668 3.89541 3.99902 4.13114 4.41314 4.48261 4.59752 4.74211 4.86221 4.92491 4.94604 5.01847 5.07430 5.11354 5.33252 5.41408 5.44232 5.69660 5.71864 5.72754 5.92852 6.01190 6.03654 6.09639 6.38411 6.47778 7.47140 7.54570 7.94047 8.29279 9.16910 10.78867 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002969 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.449653 B = 9429.730150 C =10161.779242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.349 6.349 3 C 0.455 3.545 4 O -0.481 6.481 5 C 0.145 3.855 6 H 0.134 0.866 7 O -0.325 6.325 8 C 0.482 3.518 9 O -0.480 6.480 10 C -0.125 4.125 11 S -0.056 6.056 12 C -0.536 4.536 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.923 3.077 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.133 4.133 21 C -0.056 4.056 22 C -0.133 4.133 23 C -0.079 4.079 24 C -0.158 4.158 25 C 0.129 3.871 26 F -0.126 7.126 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.269 0.731 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 -16.013 -19.955 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.296 3.704 4 O -0.366 6.366 5 C 0.087 3.913 6 H 0.152 0.848 7 O -0.243 6.243 8 C 0.324 3.676 9 O -0.364 6.364 10 C -0.273 4.273 11 S 0.171 5.829 12 C -0.684 4.684 13 H 0.096 0.904 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.749 3.251 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.134 4.134 21 C -0.074 4.074 22 C -0.151 4.151 23 C -0.097 4.097 24 C -0.176 4.176 25 C 0.110 3.890 26 F -0.105 7.105 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.911 -16.654 -18.526 25.216 hybrid contribution 0.185 1.750 -0.721 1.902 sum -3.726 -14.904 -19.248 24.627 Atomic orbital electron populations 1.23334 0.75707 1.03898 1.02857 1.86503 1.23784 1.32280 1.83936 1.23576 0.91404 0.82247 0.73192 1.90726 1.66221 1.36124 1.43546 1.20295 0.87868 0.84063 0.99038 0.84827 1.86674 1.78446 1.25862 1.33321 1.23604 0.73310 0.90741 0.79975 1.90687 1.46018 1.58647 1.41040 1.23323 1.05261 0.89801 1.08908 1.85459 1.89568 1.14930 0.92990 1.22880 1.53768 0.95923 0.95810 0.90427 1.25010 0.94752 0.99330 0.94429 1.70021 1.45707 1.36961 0.97501 0.86053 0.78309 0.82335 0.78443 1.19463 1.20496 1.20492 1.19236 1.06553 0.92323 0.95300 1.21071 0.94547 1.00813 0.90961 1.21267 1.00473 0.95474 0.97931 1.21142 0.97035 0.93340 0.98223 1.21121 1.02954 1.01480 0.92071 1.17392 0.99397 0.86621 0.85606 1.91558 1.91014 1.71733 1.56167 0.91482 0.91779 0.87761 0.87506 0.87416 0.92089 0.83645 0.84678 0.84630 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.67 10.55 -39.25 -0.41 -5.08 16 3 C 0.46 7.18 7.24 36.01 0.26 7.44 16 4 O -0.48 -8.80 16.26 -25.40 -0.41 -9.21 16 5 C 0.14 2.18 2.46 -29.03 -0.07 2.11 16 6 H 0.13 2.06 6.81 -51.92 -0.35 1.71 16 7 O -0.33 -5.41 8.25 -45.90 -0.38 -5.79 16 8 C 0.48 9.55 7.94 36.01 0.29 9.84 16 9 O -0.48 -10.75 15.08 -18.75 -0.28 -11.03 16 10 C -0.13 -2.58 6.27 36.01 0.23 -2.35 16 11 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 12 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 13 H 0.08 2.06 7.80 -52.48 -0.41 1.65 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 16 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C -0.13 -1.61 5.05 -104.55 -0.53 -2.14 16 21 C -0.06 -0.58 9.35 -39.59 -0.37 -0.95 16 22 C -0.13 -1.02 10.04 -39.58 -0.40 -1.42 16 23 C -0.08 -0.54 10.04 -39.59 -0.40 -0.93 16 24 C -0.16 -1.28 10.03 -39.51 -0.40 -1.67 16 25 C 0.13 1.42 7.24 -39.42 -0.29 1.13 16 26 F -0.13 -1.53 16.57 2.25 0.04 -1.49 16 27 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.97 8.14 -51.92 -0.42 1.55 16 31 H 0.11 2.09 8.14 -51.91 -0.42 1.67 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 33 H 0.15 1.49 7.33 -52.49 -0.38 1.11 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -34.64 347.72 -6.79 -41.42 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -3.66 Total: -1.16 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.41 Total: -0.28 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.73 Total: -25.04 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -1.49 Total: -31.12 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.64 -6.79 -41.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744696318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.105 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds