Wall clock time and date at job start Tue Mar 31 2020 15:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34226 * 116.99879 * 2 1 4 4 O 1.20830 * 120.00398 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99958 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.46953 * 304.99658 * 5 3 2 7 7 O 1.45196 * 109.47171 * 184.99614 * 5 3 2 8 8 C 1.34230 * 116.99838 * 90.00087 * 7 5 3 9 9 O 1.20827 * 120.00234 * 359.97438 * 8 7 5 10 10 C 1.50707 * 119.99686 * 179.97438 * 8 7 5 11 11 S 1.81000 * 109.46854 * 179.97438 * 10 8 7 12 12 C 1.76198 * 99.99955 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99933 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00086 * 180.02562 * 12 11 10 15 15 N 1.31627 * 119.99949 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99870 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47196 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46997 * 119.99924 * 16 14 12 19 19 H 1.48500 * 109.46994 * 239.99896 * 16 14 12 20 20 C 1.50699 * 109.47009 * 64.99079 * 5 3 2 21 21 C 1.38228 * 120.00852 * 95.26549 * 20 5 3 22 22 C 1.38229 * 120.02156 * 180.29817 * 21 20 5 23 23 C 1.38262 * 120.05298 * 359.71232 * 22 21 20 24 24 C 1.38177 * 120.02678 * 0.02562 * 23 22 21 25 25 C 1.38437 * 120.01912 * 275.00270 * 20 5 3 26 26 F 1.35104 * 120.02166 * 359.97438 * 25 20 5 27 27 H 1.09001 * 109.47109 * 300.00508 * 1 2 3 28 28 H 1.09002 * 109.46911 * 60.00204 * 1 2 3 29 29 H 1.08994 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46804 * 299.99592 * 10 8 7 31 31 H 1.09001 * 109.47054 * 59.99665 * 10 8 7 32 32 H 0.97007 * 119.99708 * 179.97438 * 15 14 12 33 33 H 1.07993 * 119.98806 * 359.97438 * 21 20 5 34 34 H 1.08001 * 119.96987 * 179.70237 * 22 21 20 35 35 H 1.08002 * 119.98761 * 179.97438 * 23 22 21 36 36 H 1.07996 * 120.01639 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9604 0.7051 0.8411 7 8 3.9784 2.6620 0.1188 8 6 4.1572 3.1399 1.3603 9 8 3.9751 2.4230 2.3157 10 6 4.5852 4.5707 1.5625 11 16 4.7386 4.9099 3.3338 12 6 5.2345 6.5998 3.2799 13 1 5.3520 7.0981 2.3288 14 6 5.4741 7.2908 4.4596 15 7 5.3304 6.6837 5.6186 16 14 5.9991 9.0826 4.4024 17 1 6.0869 9.5278 2.9884 18 1 5.0014 9.9139 5.1226 19 1 7.3269 9.2302 5.0507 20 6 4.0989 0.7016 -1.2885 21 6 4.3891 1.5383 -2.3499 22 6 4.8718 1.0121 -3.5334 23 6 5.0705 -0.3508 -3.6552 24 6 4.7862 -1.1885 -2.5937 25 6 4.3029 -0.6625 -1.4074 26 9 4.0251 -1.4806 -0.3687 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 5.5469 4.7344 1.0762 31 1 3.8403 5.2376 1.1283 32 1 5.4982 7.1666 6.4431 33 1 4.2337 2.6028 -2.2561 34 1 5.0937 1.6660 -4.3638 35 1 5.4473 -0.7608 -4.5805 36 1 4.9419 -2.2530 -2.6888 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744696318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:14 Heat of formation + Delta-G solvation = -200.316708 kcal Electronic energy + Delta-G solvation = -25095.276142 eV Core-core repulsion = 20971.354171 eV Total energy + Delta-G solvation = -4123.921971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.00588 -42.48321 -41.24376 -39.99632 -38.15976 -37.50479 -34.62881 -33.91238 -31.61929 -31.41366 -29.64580 -27.91215 -27.62784 -24.14678 -23.75262 -22.93513 -21.81934 -20.04852 -19.44771 -19.09913 -18.82817 -18.25055 -17.86322 -17.36831 -17.20747 -17.00375 -16.91192 -16.63776 -16.28853 -15.91008 -15.21737 -15.03783 -14.87738 -14.59907 -14.40158 -14.23730 -14.11304 -13.70745 -13.44556 -13.21069 -13.15262 -12.93644 -12.89033 -12.68756 -12.57057 -12.21487 -12.02609 -11.92000 -11.79112 -11.72315 -11.18954 -10.42475 -10.10234 -9.75873 -8.77428 -8.39182 -6.19846 -0.09668 0.17541 0.58265 0.70638 0.89728 1.30469 1.42133 1.44489 1.57067 1.77875 2.21733 2.55224 2.96321 2.99230 3.14253 3.20816 3.42781 3.46847 3.58898 3.84364 4.08036 4.09808 4.15692 4.19744 4.32334 4.35728 4.36528 4.56598 4.74569 4.81969 4.98637 5.03825 5.07819 5.29651 5.40181 5.40772 5.83600 6.16958 6.24437 6.41556 7.02576 8.70464 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002969 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.449653 B = 9429.730150 C =10161.779242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.456 3.544 4 O -0.515 6.515 5 C 0.142 3.858 6 H 0.123 0.877 7 O -0.313 6.313 8 C 0.489 3.511 9 O -0.513 6.513 10 C -0.104 4.104 11 S -0.136 6.136 12 C -0.547 4.547 13 H 0.088 0.912 14 C 0.016 3.984 15 N -0.910 5.910 16 Si 1.002 2.998 17 H -0.255 1.255 18 H -0.275 1.275 19 H -0.272 1.272 20 C -0.155 4.155 21 C -0.072 4.072 22 C -0.125 4.125 23 C -0.065 4.065 24 C -0.152 4.152 25 C 0.108 3.892 26 F -0.140 7.140 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.273 0.727 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.643 -16.142 -23.247 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.298 3.702 4 O -0.404 6.404 5 C 0.085 3.915 6 H 0.140 0.860 7 O -0.230 6.230 8 C 0.331 3.669 9 O -0.400 6.400 10 C -0.252 4.252 11 S 0.091 5.909 12 C -0.695 4.695 13 H 0.107 0.893 14 C -0.189 4.189 15 N -0.546 5.546 16 Si 0.824 3.176 17 H -0.179 1.179 18 H -0.200 1.200 19 H -0.198 1.198 20 C -0.156 4.156 21 C -0.090 4.090 22 C -0.142 4.142 23 C -0.083 4.083 24 C -0.170 4.170 25 C 0.089 3.911 26 F -0.119 7.119 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.082 0.918 33 H 0.157 0.843 34 H 0.183 0.817 35 H 0.194 0.806 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.136 -16.815 -21.850 27.749 hybrid contribution -0.114 1.614 0.140 1.624 sum -3.250 -15.201 -21.710 26.701 Atomic orbital electron populations 1.23705 0.73664 1.06401 1.02825 1.86501 1.25775 1.30918 1.83202 1.23756 0.91729 0.82422 0.72247 1.90699 1.66986 1.37180 1.45495 1.20492 0.87827 0.82464 1.00737 0.85962 1.86623 1.77967 1.27320 1.31079 1.23383 0.72665 0.90331 0.80488 1.90676 1.47540 1.59432 1.42303 1.23108 1.07220 0.90734 1.04185 1.85589 1.89940 1.15908 0.99422 1.23230 1.53742 0.95946 0.96574 0.89344 1.26144 0.94439 1.04534 0.93820 1.70174 1.46892 1.39173 0.98409 0.84853 0.77912 0.75690 0.79178 1.17892 1.20002 1.19750 1.19175 1.08853 0.93202 0.94408 1.21172 0.95591 1.00468 0.91753 1.21636 0.98682 0.96542 0.97388 1.21639 0.94902 0.92689 0.99034 1.21495 1.01457 1.03059 0.90998 1.17692 1.00836 0.86103 0.86492 1.91519 1.91363 1.71949 1.57049 0.92316 0.91075 0.83984 0.84892 0.85929 0.91811 0.84282 0.81720 0.80601 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.35 -9.44 10.55 -51.38 -0.54 -9.99 16 3 C 0.46 14.85 7.24 71.24 0.52 15.37 16 4 O -0.52 -19.50 16.26 28.30 0.46 -19.04 16 5 C 0.14 4.42 2.46 29.10 0.07 4.49 16 6 H 0.12 4.04 6.81 -2.38 -0.02 4.02 16 7 O -0.31 -10.65 8.25 -45.07 -0.37 -11.02 16 8 C 0.49 19.87 7.94 71.24 0.57 20.43 16 9 O -0.51 -24.03 15.08 21.96 0.33 -23.70 16 10 C -0.10 -4.32 6.27 71.24 0.45 -3.87 16 11 S -0.14 -7.48 20.57 -56.49 -1.16 -8.64 16 12 C -0.55 -30.90 9.50 67.95 0.65 -30.26 16 13 H 0.09 4.63 7.80 -2.91 -0.02 4.60 16 14 C 0.02 0.88 5.49 84.86 0.47 1.35 16 15 N -0.91 -55.24 13.22 21.65 0.29 -54.96 16 16 Si 1.00 43.15 29.55 68.60 2.03 45.17 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 C -0.16 -3.74 5.05 -19.82 -0.10 -3.84 16 21 C -0.07 -1.40 9.35 22.27 0.21 -1.19 16 22 C -0.12 -1.49 10.04 22.27 0.22 -1.27 16 23 C -0.07 -0.60 10.04 22.26 0.22 -0.38 16 24 C -0.15 -2.02 10.03 22.31 0.22 -1.79 16 25 C 0.11 2.28 7.24 22.38 0.16 2.45 16 26 F -0.14 -3.41 16.57 44.97 0.75 -2.67 16 27 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 28 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 29 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.13 4.80 8.14 -2.40 -0.02 4.78 16 31 H 0.12 4.73 8.14 -2.40 -0.02 4.71 16 32 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 33 H 0.14 2.78 7.33 -2.91 -0.02 2.76 16 34 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 36 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -78.38 347.72 7.75 -70.64 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.12 Total: 11.01 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 4.85 Total: 3.19 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.29 Total: -54.96 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -0.12 Total: -63.74 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.75 Total: -2.67 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.16 Total: -8.64 kcal Total: -78.38 7.75 -70.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744696318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.681 kcal (2) G-P(sol) polarization free energy of solvation -78.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds