Wall clock time and date at job start Tue Mar 31 2020 15:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31675 * 1 3 3 Si 1.86792 * 119.99971 * 2 1 4 4 H 1.48506 * 109.46805 * 239.99919 * 3 2 1 5 5 H 1.48499 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47341 * 120.00086 * 3 2 1 7 7 C 1.38598 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99374 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00553 * 359.97438 * 7 2 1 10 10 C 1.76201 * 99.99978 * 180.02562 * 9 7 2 11 11 N 1.31556 * 125.67312 * 359.97438 * 10 9 7 12 12 C 1.33542 * 109.61353 * 180.02562 * 11 10 9 13 13 C 1.36253 * 108.23469 * 359.97438 * 12 11 10 14 14 C 1.47722 * 126.68181 * 180.26219 * 13 12 11 15 15 C 1.39656 * 120.15437 * 32.55039 * 14 13 12 16 16 C 1.37935 * 119.84539 * 179.69738 * 15 14 13 17 17 C 1.38375 * 120.14962 * 0.57862 * 16 15 14 18 18 C 1.38377 * 120.30973 * 359.71843 * 17 16 15 19 19 C 1.37930 * 120.15184 * 359.97438 * 18 17 16 20 20 N 1.36318 * 125.66956 * 180.02562 * 10 9 7 21 21 C 1.46500 * 126.56699 * 359.97438 * 20 10 9 22 22 C 1.53004 * 109.47316 * 264.38421 * 21 20 10 23 23 F 1.39906 * 109.46734 * 60.00033 * 22 21 20 24 24 F 1.39895 * 109.47167 * 179.97438 * 22 21 20 25 25 F 1.39891 * 109.47305 * 300.00569 * 22 21 20 26 26 H 0.96997 * 120.00121 * 0.02562 * 1 2 3 27 27 H 1.08004 * 125.88217 * 180.02562 * 12 11 10 28 28 H 1.08001 * 120.07264 * 359.97438 * 15 14 13 29 29 H 1.07999 * 119.92260 * 180.29986 * 16 15 14 30 30 H 1.08008 * 119.84442 * 179.74526 * 17 16 15 31 31 H 1.07998 * 119.92493 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.07994 * 180.02562 * 19 18 17 33 33 H 1.09000 * 109.47452 * 24.38931 * 21 20 10 34 34 H 1.08999 * 109.47254 * 144.38879 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3167 0.0000 0.0000 3 14 2.2507 1.6177 0.0000 4 1 3.1045 1.6963 -1.2126 5 1 1.2857 2.7464 -0.0006 6 1 3.1045 1.6964 1.2124 7 6 2.0096 -1.2003 0.0005 8 1 3.0897 -1.2003 0.0010 9 16 1.1287 -2.7263 0.0019 10 6 2.4785 -3.8589 0.0029 11 7 3.7531 -3.5333 0.0021 12 6 4.4987 -4.6412 0.0027 13 6 3.6632 -5.7175 0.0045 14 6 4.0578 -7.1410 0.0111 15 6 5.2243 -7.5426 0.6657 16 6 5.5835 -8.8743 0.6732 17 6 4.7973 -9.8098 0.0240 18 6 3.6435 -9.4181 -0.6319 19 6 3.2691 -8.0906 -0.6420 20 7 2.3756 -5.2182 0.0036 21 6 1.1364 -5.9997 0.0042 22 6 0.7805 -6.3904 1.4401 23 9 0.6031 -5.2342 2.2076 24 9 -0.4031 -7.1362 1.4407 25 9 1.8158 -7.1574 1.9849 26 1 -0.4850 0.8400 -0.0004 27 1 5.5782 -4.6778 0.0027 28 1 5.8413 -6.8127 1.1687 29 1 6.4827 -9.1869 1.1832 30 1 5.0854 -10.8508 0.0295 31 1 3.0343 -10.1535 -1.1362 32 1 2.3682 -7.7862 -1.1539 33 1 0.3297 -5.4021 -0.4203 34 1 1.2747 -6.9005 -0.5937 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748032001.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:39 Heat of formation + Delta-G solvation = -67.078164 kcal Electronic energy + Delta-G solvation = -25544.984313 eV Core-core repulsion = 21348.045235 eV Total energy + Delta-G solvation = -4196.939079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.01010 -47.57236 -47.41576 -41.36100 -38.78958 -34.41055 -32.65603 -32.05512 -30.94428 -28.86350 -27.83019 -25.67345 -23.79997 -22.92133 -22.65530 -20.85975 -20.18362 -18.75975 -18.38517 -18.16979 -17.59319 -16.75126 -16.32628 -15.43753 -15.08726 -14.93459 -14.42607 -14.40500 -14.38555 -14.17541 -13.91645 -13.69938 -13.59331 -13.57329 -13.50278 -13.28332 -12.95120 -12.69632 -12.66187 -12.08942 -11.34263 -11.23831 -11.13094 -11.07325 -11.00820 -10.21300 -9.79271 -9.40867 -9.32294 -9.09536 -8.99761 -8.95496 -8.10500 -6.60388 -6.46932 -4.19671 1.03283 1.36562 2.15911 2.46063 2.86190 3.09208 3.21567 3.22670 3.28878 3.58647 3.77714 3.88995 3.92903 4.00299 4.26390 4.59039 4.71737 4.81436 4.89648 4.93290 4.97271 5.11717 5.14909 5.40487 5.48488 5.56175 5.80478 5.93820 6.02056 6.31990 6.38704 6.46246 6.74287 6.92020 7.13136 7.24787 7.57913 8.36962 8.55566 9.05272 10.61582 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.004211 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.619702 B = 6647.907153 C = 7763.007606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.074 3.926 3 Si 0.933 3.067 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.106 0.894 9 S 0.126 5.874 10 C 0.226 3.774 11 N -0.490 5.490 12 C 0.030 3.970 13 C -0.037 4.037 14 C 0.022 3.978 15 C -0.108 4.108 16 C -0.110 4.110 17 C -0.134 4.134 18 C -0.110 4.110 19 C -0.134 4.134 20 N -0.461 5.461 21 C 0.062 3.938 22 C 0.437 3.563 23 F -0.164 7.164 24 F -0.180 7.180 25 F -0.175 7.175 26 H 0.274 0.726 27 H 0.166 0.834 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 -17.655 -0.319 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.135 4.135 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.675 4.675 8 H 0.124 0.876 9 S 0.362 5.638 10 C -0.140 4.140 11 N -0.211 5.211 12 C -0.122 4.122 13 C -0.150 4.150 14 C 0.020 3.980 15 C -0.127 4.127 16 C -0.128 4.128 17 C -0.152 4.152 18 C -0.128 4.128 19 C -0.153 4.153 20 N -0.152 5.152 21 C -0.064 4.064 22 C 0.381 3.619 23 F -0.145 7.145 24 F -0.162 7.162 25 F -0.156 7.156 26 H 0.084 0.916 27 H 0.184 0.816 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.157 0.843 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.769 -16.869 -0.291 17.097 hybrid contribution 1.353 0.191 0.238 1.387 sum 4.122 -16.679 -0.053 17.181 Atomic orbital electron populations 1.69957 1.06033 1.28510 1.46897 1.25073 0.95200 0.99630 0.93606 0.85964 0.79039 0.79706 0.79407 1.19509 1.20831 1.19490 1.23139 0.97151 0.88832 1.58425 0.87576 1.83407 0.98103 0.96209 1.86092 1.27105 1.00307 0.83934 1.02607 1.70760 0.99747 1.27743 1.22854 1.22375 0.98957 0.87379 1.03526 1.19368 0.83703 0.93113 1.18862 1.17876 0.94843 0.88880 0.96410 1.21144 0.96435 0.96083 0.99068 1.21036 0.99641 0.92900 0.99256 1.21124 0.95591 0.99381 0.99113 1.20980 0.96980 0.95461 0.99365 1.21270 1.00061 0.93261 1.00688 1.45002 1.03907 1.05812 1.60468 1.23034 0.89857 1.01061 0.92478 1.20932 0.74704 0.75501 0.90742 1.93312 1.94998 1.48399 1.77825 1.93186 1.48472 1.77550 1.96983 1.93227 1.58406 1.76123 1.87867 0.91609 0.81631 0.85609 0.85970 0.86316 0.86137 0.86563 0.84305 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.39 13.22 55.48 0.73 -23.66 16 2 C 0.07 1.99 5.49 -17.49 -0.10 1.90 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.53 -14.53 9.36 30.87 0.29 -14.24 16 8 H 0.11 2.99 6.88 -52.48 -0.36 2.63 16 9 S 0.13 3.08 21.10 -107.50 -2.27 0.81 16 10 C 0.23 5.00 7.95 -88.31 -0.70 4.30 16 11 N -0.49 -11.21 9.96 -13.09 -0.13 -11.34 16 12 C 0.03 0.56 11.40 -17.52 -0.20 0.36 16 13 C -0.04 -0.63 6.26 -81.88 -0.51 -1.15 16 14 C 0.02 0.31 4.93 -104.96 -0.52 -0.21 16 15 C -0.11 -1.35 9.59 -39.16 -0.38 -1.72 16 16 C -0.11 -1.15 10.03 -39.64 -0.40 -1.55 16 17 C -0.13 -1.32 10.04 -39.48 -0.40 -1.72 16 18 C -0.11 -1.15 10.03 -39.64 -0.40 -1.54 16 19 C -0.13 -1.65 8.85 -39.16 -0.35 -2.00 16 20 N -0.46 -8.33 2.71 -112.70 -0.30 -8.63 16 21 C 0.06 0.88 5.61 -4.04 -0.02 0.86 16 22 C 0.44 6.58 3.29 37.16 0.12 6.70 16 23 F -0.16 -2.97 17.24 2.25 0.04 -2.93 16 24 F -0.18 -2.43 17.32 2.25 0.04 -2.39 16 25 F -0.17 -2.74 15.92 2.25 0.04 -2.70 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.17 2.55 8.06 -52.48 -0.42 2.13 16 28 H 0.13 1.45 7.90 -52.49 -0.41 1.04 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 1.30 5.28 -52.49 -0.28 1.02 16 33 H 0.14 1.86 7.56 -51.93 -0.39 1.46 16 34 H 0.13 1.46 4.72 -51.93 -0.25 1.21 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -31.08 324.04 -8.07 -39.15 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -2.52 Total: 0.77 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.55 Total: -10.02 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.30 Total: -43.63 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.11 Total: -8.02 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.27 Total: 0.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.08 -8.07 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748032001.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.933 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds