Wall clock time and date at job start Tue Mar 31 2020 15:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31675 * 1 3 3 Si 1.86792 * 119.99971 * 2 1 4 4 H 1.48506 * 109.46805 * 239.99919 * 3 2 1 5 5 H 1.48499 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47341 * 120.00086 * 3 2 1 7 7 C 1.38598 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99374 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00553 * 359.97438 * 7 2 1 10 10 C 1.76201 * 99.99978 * 180.02562 * 9 7 2 11 11 N 1.31556 * 125.67312 * 359.97438 * 10 9 7 12 12 C 1.33542 * 109.61353 * 180.02562 * 11 10 9 13 13 C 1.36253 * 108.23469 * 359.97438 * 12 11 10 14 14 C 1.47722 * 126.68181 * 180.26219 * 13 12 11 15 15 C 1.39656 * 120.15437 * 32.55039 * 14 13 12 16 16 C 1.37935 * 119.84539 * 179.69738 * 15 14 13 17 17 C 1.38375 * 120.14962 * 0.57862 * 16 15 14 18 18 C 1.38377 * 120.30973 * 359.71843 * 17 16 15 19 19 C 1.37930 * 120.15184 * 359.97438 * 18 17 16 20 20 N 1.36318 * 125.66956 * 180.02562 * 10 9 7 21 21 C 1.46500 * 126.56699 * 359.97438 * 20 10 9 22 22 C 1.53004 * 109.47316 * 264.38421 * 21 20 10 23 23 F 1.39906 * 109.46734 * 60.00033 * 22 21 20 24 24 F 1.39895 * 109.47167 * 179.97438 * 22 21 20 25 25 F 1.39891 * 109.47305 * 300.00569 * 22 21 20 26 26 H 0.96997 * 120.00121 * 0.02562 * 1 2 3 27 27 H 1.08004 * 125.88217 * 180.02562 * 12 11 10 28 28 H 1.08001 * 120.07264 * 359.97438 * 15 14 13 29 29 H 1.07999 * 119.92260 * 180.29986 * 16 15 14 30 30 H 1.08008 * 119.84442 * 179.74526 * 17 16 15 31 31 H 1.07998 * 119.92493 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.07994 * 180.02562 * 19 18 17 33 33 H 1.09000 * 109.47452 * 24.38931 * 21 20 10 34 34 H 1.08999 * 109.47254 * 144.38879 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3167 0.0000 0.0000 3 14 2.2507 1.6177 0.0000 4 1 3.1045 1.6963 -1.2126 5 1 1.2857 2.7464 -0.0006 6 1 3.1045 1.6964 1.2124 7 6 2.0096 -1.2003 0.0005 8 1 3.0897 -1.2003 0.0010 9 16 1.1287 -2.7263 0.0019 10 6 2.4785 -3.8589 0.0029 11 7 3.7531 -3.5333 0.0021 12 6 4.4987 -4.6412 0.0027 13 6 3.6632 -5.7175 0.0045 14 6 4.0578 -7.1410 0.0111 15 6 5.2243 -7.5426 0.6657 16 6 5.5835 -8.8743 0.6732 17 6 4.7973 -9.8098 0.0240 18 6 3.6435 -9.4181 -0.6319 19 6 3.2691 -8.0906 -0.6420 20 7 2.3756 -5.2182 0.0036 21 6 1.1364 -5.9997 0.0042 22 6 0.7805 -6.3904 1.4401 23 9 0.6031 -5.2342 2.2076 24 9 -0.4031 -7.1362 1.4407 25 9 1.8158 -7.1574 1.9849 26 1 -0.4850 0.8400 -0.0004 27 1 5.5782 -4.6778 0.0027 28 1 5.8413 -6.8127 1.1687 29 1 6.4827 -9.1869 1.1832 30 1 5.0854 -10.8508 0.0295 31 1 3.0343 -10.1535 -1.1362 32 1 2.3682 -7.7862 -1.1539 33 1 0.3297 -5.4021 -0.4203 34 1 1.2747 -6.9005 -0.5937 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748032001.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:38 Heat of formation + Delta-G solvation = -83.165823 kcal Electronic energy + Delta-G solvation = -25545.681927 eV Core-core repulsion = 21348.045235 eV Total energy + Delta-G solvation = -4197.636692 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.26226 -48.77533 -48.73854 -42.83416 -39.71650 -35.80391 -34.68499 -33.14234 -31.82032 -30.20535 -29.15942 -27.69490 -25.08110 -23.98320 -23.70458 -22.26383 -21.44452 -20.24472 -19.64654 -19.54297 -19.09229 -17.96043 -17.43221 -16.93405 -16.69062 -16.29033 -15.88967 -15.63980 -15.61025 -15.43641 -15.16131 -14.92325 -14.90004 -14.85728 -14.66999 -14.50242 -14.35078 -13.76241 -13.65602 -13.37115 -13.25001 -12.95951 -12.93098 -12.19916 -11.99703 -11.92467 -11.39741 -11.07851 -10.95788 -10.81303 -10.49822 -9.85761 -9.50014 -8.48316 -8.32511 -6.23425 -0.03463 0.50550 0.72098 1.01158 1.38106 1.42593 1.50947 1.56589 1.68492 2.10961 2.15369 2.53614 2.71491 2.92814 2.94119 3.03181 3.08031 3.45599 3.58264 3.74577 4.02492 4.13261 4.17053 4.33105 4.40565 4.59126 4.66542 4.99822 5.02426 5.18686 5.47895 5.50085 5.62209 5.63731 5.69843 5.82639 6.08584 6.26849 6.98620 7.02301 8.61211 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.004211 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.619702 B = 6647.907153 C = 7763.007606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.089 0.911 9 S 0.093 5.907 10 C 0.199 3.801 11 N -0.523 5.523 12 C -0.008 4.008 13 C 0.001 3.999 14 C -0.014 4.014 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.112 4.112 19 C -0.138 4.138 20 N -0.453 5.453 21 C 0.056 3.944 22 C 0.442 3.558 23 F -0.186 7.186 24 F -0.167 7.167 25 F -0.176 7.176 26 H 0.278 0.722 27 H 0.190 0.810 28 H 0.127 0.873 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -20.737 -0.622 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.177 4.177 3 Si 0.817 3.183 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.698 4.698 8 H 0.107 0.893 9 S 0.327 5.673 10 C -0.168 4.168 11 N -0.244 5.244 12 C -0.158 4.158 13 C -0.114 4.114 14 C -0.016 4.016 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.140 4.140 18 C -0.130 4.130 19 C -0.156 4.156 20 N -0.142 5.142 21 C -0.069 4.069 22 C 0.386 3.614 23 F -0.167 7.167 24 F -0.149 7.149 25 F -0.158 7.158 26 H 0.088 0.912 27 H 0.207 0.793 28 H 0.145 0.855 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.142 0.858 33 H 0.163 0.837 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.851 -20.008 -0.594 20.384 hybrid contribution 1.165 0.722 0.344 1.413 sum 5.016 -19.286 -0.250 19.929 Atomic orbital electron populations 1.70033 1.07191 1.29450 1.47664 1.25919 0.96054 1.02677 0.93054 0.85047 0.77995 0.75978 0.79305 1.19133 1.19300 1.19405 1.23264 0.96709 0.90781 1.59043 0.89306 1.83028 0.99652 0.95959 1.88633 1.26473 0.99440 0.85132 1.05800 1.70611 1.00709 1.30296 1.22831 1.22807 1.00247 0.86853 1.05925 1.19947 0.82805 0.94603 1.14025 1.17918 0.96763 0.87264 0.99645 1.21322 0.95768 0.97429 0.98822 1.21385 1.00653 0.91938 0.99078 1.21610 0.94564 1.00900 0.96906 1.21357 0.97487 0.95043 0.99083 1.21436 0.99999 0.93905 1.00291 1.45133 1.05514 1.04843 1.58720 1.23406 0.88646 1.02181 0.92626 1.20899 0.75035 0.74979 0.90505 1.93277 1.95146 1.49810 1.78469 1.93211 1.47676 1.77062 1.96905 1.93221 1.58575 1.76034 1.87961 0.91225 0.79302 0.85471 0.83306 0.83096 0.83217 0.85844 0.83660 0.81396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.73 13.22 21.61 0.29 -51.45 16 2 C 0.03 1.59 5.49 84.80 0.47 2.06 16 3 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.70 9.36 67.91 0.64 -31.06 16 8 H 0.09 5.28 6.88 -2.91 -0.02 5.26 16 9 S 0.09 4.77 21.10 -56.49 -1.19 3.58 16 10 C 0.20 9.12 7.95 179.54 1.43 10.54 16 11 N -0.52 -24.86 9.96 -195.32 -1.95 -26.81 16 12 C -0.01 -0.30 11.40 83.97 0.96 0.66 16 13 C 0.00 0.02 6.26 40.20 0.25 0.27 16 14 C -0.01 -0.37 4.93 -20.09 -0.10 -0.47 16 15 C -0.11 -2.57 9.59 22.54 0.22 -2.36 16 16 C -0.11 -1.90 10.03 22.23 0.22 -1.68 16 17 C -0.12 -1.80 10.04 22.34 0.22 -1.57 16 18 C -0.11 -1.82 10.03 22.23 0.22 -1.60 16 19 C -0.14 -2.95 8.85 22.54 0.20 -2.75 16 20 N -0.45 -16.39 2.71 -510.48 -1.38 -17.78 16 21 C 0.06 1.54 5.61 86.38 0.48 2.03 16 22 C 0.44 12.89 3.29 71.98 0.24 13.13 16 23 F -0.19 -6.83 17.24 44.97 0.78 -6.06 16 24 F -0.17 -4.23 17.32 44.97 0.78 -3.45 16 25 F -0.18 -5.27 15.92 44.97 0.72 -4.55 16 26 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.19 5.88 8.06 -2.91 -0.02 5.86 16 28 H 0.13 2.73 7.90 -2.91 -0.02 2.71 16 29 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 32 H 0.12 2.34 5.28 -2.91 -0.02 2.33 16 33 H 0.15 3.87 7.56 -2.39 -0.02 3.85 16 34 H 0.17 3.32 4.72 -2.39 -0.01 3.30 16 Total: -1.00 -70.38 324.04 6.68 -63.70 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.17 Total: 9.44 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.45 Total: -12.79 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -3.04 Total: -96.03 kcal Atomic # 9 Polarization: -16.33 SS G_CDS: 2.27 Total: -14.06 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.19 Total: 3.58 kcal Total: -70.38 6.68 -63.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748032001.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.461 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds