Wall clock time and date at job start Tue Mar 31 2020 15:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99796 * 2 1 4 4 O 1.20832 * 120.00091 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99681 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46864 * 180.02562 * 5 3 2 7 7 C 1.36939 * 120.00257 * 264.44116 * 6 5 3 8 8 H 1.07995 * 120.00119 * 202.52354 * 7 6 5 9 9 C 1.38816 * 119.99640 * 22.52718 * 7 6 5 10 10 N 1.31619 * 120.00250 * 7.11067 * 9 7 6 11 11 Si 1.86800 * 119.99836 * 187.11851 * 9 7 6 12 12 H 1.48501 * 109.47276 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47105 * 119.99726 * 11 9 7 14 14 H 1.48498 * 109.46798 * 239.99645 * 11 9 7 15 15 C 1.46501 * 119.99994 * 84.44171 * 6 5 3 16 16 C 1.50695 * 109.47344 * 262.03827 * 15 6 5 17 17 C 1.38227 * 119.99343 * 341.54154 * 16 15 6 18 18 C 1.38337 * 119.98794 * 179.97438 * 17 16 15 19 19 Cl 1.73602 * 120.01319 * 179.97438 * 18 17 16 20 20 C 1.38375 * 119.96969 * 359.97438 * 18 17 16 21 21 C 1.38189 * 119.99148 * 0.02562 * 20 18 17 22 22 C 1.38222 * 119.99160 * 161.25840 * 16 15 6 23 23 N 1.48014 * 119.98850 * 0.02562 * 22 16 15 24 24 O 1.21802 * 120.00200 * 185.67987 * 23 22 16 25 25 O 1.21806 * 119.99799 * 5.68243 * 23 22 16 26 26 H 1.09002 * 109.46764 * 299.99388 * 1 2 3 27 27 H 1.08995 * 109.47467 * 59.99991 * 1 2 3 28 28 H 1.09005 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47025 * 60.00616 * 5 3 2 30 30 H 1.08996 * 109.47673 * 299.99997 * 5 3 2 31 31 H 0.96998 * 119.99713 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.46910 * 22.04244 * 15 6 5 33 33 H 1.09002 * 109.47041 * 142.03577 * 15 6 5 34 34 H 1.08005 * 120.01095 * 359.95093 * 17 16 15 35 35 H 1.08000 * 120.00236 * 180.02562 * 20 18 17 36 36 H 1.07993 * 119.99481 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.2854 3.3046 -1.1799 8 1 4.9194 4.1789 -1.1804 9 6 3.7785 2.8141 -2.3755 10 7 2.8963 1.8374 -2.3649 11 14 4.3485 3.5403 -3.9994 12 1 5.3361 4.6185 -3.7401 13 1 4.9798 2.4776 -4.8224 14 1 3.1822 4.1024 -4.7268 15 6 4.0720 3.4162 1.2634 16 6 2.8174 4.2267 1.4632 17 6 1.9931 4.5007 0.3880 18 6 0.8411 5.2442 0.5717 19 17 -0.1942 5.5893 -0.7785 20 6 0.5145 5.7128 1.8320 21 6 1.3392 5.4383 2.9062 22 6 2.4880 4.6909 2.7228 23 7 3.3681 4.3924 3.8748 24 8 3.0277 4.7111 5.0000 25 8 4.4329 3.8279 3.6976 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.9557 0.7810 -0.8909 30 1 3.9565 0.7806 0.8891 31 1 2.5424 1.4945 -3.2004 32 1 4.1846 2.7117 2.0874 33 1 4.9342 4.0824 1.2346 34 1 2.2486 4.1347 -0.5956 35 1 -0.3850 6.2930 1.9761 36 1 1.0846 5.8043 3.8898 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749156050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:41 Heat of formation + Delta-G solvation = -40.353471 kcal Electronic energy + Delta-G solvation = -27234.472575 eV Core-core repulsion = 23135.363385 eV Total energy + Delta-G solvation = -4099.109189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.26460 -40.95370 -40.33249 -38.10272 -37.60256 -37.45545 -36.38035 -33.97706 -32.65748 -32.20344 -29.81112 -28.23483 -27.68363 -26.90559 -24.53667 -23.34633 -22.59956 -21.56892 -20.04776 -19.66285 -18.90100 -18.59976 -18.13530 -17.65593 -17.41921 -16.91085 -16.61842 -16.37406 -15.63529 -15.49702 -15.05345 -14.80129 -14.62516 -13.94580 -13.90795 -13.64189 -13.59460 -13.05070 -13.01295 -12.74254 -12.70424 -12.61073 -12.49304 -12.30680 -12.13391 -12.11972 -12.09514 -11.91246 -11.75377 -11.34361 -11.07126 -10.56424 -10.14847 -9.81539 -9.03737 -7.97693 -5.42740 -1.16207 0.08908 0.35837 0.41301 0.99549 1.46090 1.51493 1.57692 2.03661 2.26607 2.36763 2.51947 3.21757 3.31279 3.50421 3.70506 3.91620 3.97871 4.30386 4.38218 4.44120 4.49626 4.55478 4.61488 4.65581 4.73094 4.84259 4.93173 5.00937 5.18829 5.25613 5.45058 5.60328 5.65827 5.99355 6.19168 6.63918 6.98432 7.49537 7.69757 8.08563 9.07601 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010176 B = 0.006211 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.896766 B = 4506.707197 C = 4820.343412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.387 6.387 3 C 0.465 3.535 4 O -0.524 6.524 5 C 0.187 3.813 6 N -0.576 5.576 7 C -0.259 4.259 8 H 0.080 0.920 9 C -0.027 4.027 10 N -0.919 5.919 11 Si 0.961 3.039 12 H -0.269 1.269 13 H -0.290 1.290 14 H -0.301 1.301 15 C 0.173 3.827 16 C -0.037 4.037 17 C -0.041 4.041 18 C -0.010 4.010 19 Cl -0.057 7.057 20 C -0.110 4.110 21 C -0.058 4.058 22 C -0.063 4.063 23 N 0.039 4.961 24 O -0.173 6.173 25 O -0.183 6.183 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.252 0.748 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.161 0.839 35 H 0.181 0.819 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 3.140 6.876 9.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.304 6.304 3 C 0.307 3.693 4 O -0.412 6.412 5 C 0.058 3.942 6 N -0.295 5.295 7 C -0.388 4.388 8 H 0.097 0.903 9 C -0.223 4.223 10 N -0.564 5.564 11 Si 0.791 3.209 12 H -0.193 1.193 13 H -0.216 1.216 14 H -0.228 1.228 15 C 0.047 3.953 16 C -0.042 4.042 17 C -0.060 4.060 18 C -0.037 4.037 19 Cl -0.028 7.028 20 C -0.129 4.129 21 C -0.077 4.077 22 C -0.148 4.148 23 N 0.552 4.448 24 O -0.387 6.387 25 O -0.392 6.392 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.138 0.862 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.178 0.822 35 H 0.199 0.801 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.947 3.520 6.061 9.192 hybrid contribution -0.184 0.170 -1.208 1.233 sum -6.131 3.691 4.853 8.647 Atomic orbital electron populations 1.23075 0.77625 1.03811 1.00541 1.86500 1.22997 1.35666 1.85237 1.25506 0.93900 0.80430 0.69426 1.90410 1.67304 1.36301 1.47140 1.20360 0.85385 0.86184 1.02223 1.44138 1.75434 1.07230 1.02739 1.19454 1.23850 1.11578 0.83965 0.90256 1.25467 0.97169 0.99107 1.00557 1.69779 1.31250 1.29380 1.26025 0.85287 0.77145 0.77961 0.80523 1.19320 1.21639 1.22823 1.20552 0.91633 0.94414 0.88739 1.21104 0.99619 0.94105 0.89367 1.21412 0.91002 0.91863 1.01763 1.21522 0.93187 0.98867 0.90110 1.98367 1.65797 1.93341 1.45265 1.21234 1.01544 1.01498 0.88602 1.21038 0.90179 0.94680 1.01822 1.21215 0.96597 1.11246 0.85693 1.43688 1.00896 0.97862 1.02344 1.94451 1.78684 1.55844 1.09715 1.94494 1.11118 1.41884 1.91720 0.93387 0.94375 0.86218 0.87660 0.90821 0.93795 0.89047 0.89959 0.82220 0.80136 0.80208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 10.56 113.37 1.20 2.61 16 2 O -0.39 -15.51 10.57 -51.40 -0.54 -16.06 16 3 C 0.47 20.50 6.03 71.24 0.43 20.93 16 4 O -0.52 -24.44 11.09 21.95 0.24 -24.19 16 5 C 0.19 8.00 5.51 85.63 0.47 8.47 16 6 N -0.58 -25.13 1.76 -710.69 -1.25 -26.38 16 7 C -0.26 -12.22 7.57 84.03 0.64 -11.59 16 8 H 0.08 3.71 7.84 -2.91 -0.02 3.69 16 9 C -0.03 -1.29 4.96 84.86 0.42 -0.87 16 10 N -0.92 -46.60 8.68 21.65 0.19 -46.41 16 11 Si 0.96 41.24 29.56 68.60 2.03 43.27 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 15 C 0.17 6.70 4.57 85.63 0.39 7.09 16 16 C -0.04 -1.41 5.37 -19.87 -0.11 -1.52 16 17 C -0.04 -1.64 5.91 22.29 0.13 -1.51 16 18 C -0.01 -0.32 6.32 22.33 0.14 -0.18 16 19 Cl -0.06 -1.85 28.96 -2.72 -0.08 -1.93 16 20 C -0.11 -2.87 9.83 22.29 0.22 -2.65 16 21 C -0.06 -1.55 9.56 22.27 0.21 -1.34 16 22 C -0.06 -2.10 6.83 36.38 0.25 -1.85 16 23 N 0.04 1.33 4.45 -46.46 -0.21 1.12 16 24 O -0.17 -5.64 18.46 18.88 0.35 -5.29 16 25 O -0.18 -6.52 15.42 18.88 0.29 -6.23 16 26 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 27 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 28 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 29 H 0.11 4.92 6.37 -2.39 -0.02 4.90 16 30 H 0.07 2.74 7.94 -2.39 -0.02 2.72 16 31 H 0.25 12.93 8.31 -92.71 -0.77 12.16 16 32 H 0.09 3.44 5.90 -2.39 -0.01 3.43 16 33 H 0.08 3.13 8.06 -2.39 -0.02 3.11 16 34 H 0.16 7.66 4.55 -2.91 -0.01 7.65 16 35 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.18 3.66 7.62 -2.91 -0.02 3.64 16 Total: -1.00 -55.73 322.37 6.55 -49.17 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.14 Total: 15.31 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 4.39 Total: 17.60 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.27 Total: -71.67 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: 0.34 Total: -51.76 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -55.73 6.55 -49.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749156050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.821 kcal (2) G-P(sol) polarization free energy of solvation -55.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds