Wall clock time and date at job start Tue Mar 31 2020 15:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36736 * 125.16309 * 272.94371 * 3 2 1 5 5 C 1.36748 * 114.72489 * 179.97438 * 4 3 2 6 6 C 1.36654 * 114.76023 * 0.02562 * 5 4 3 7 7 C 1.46949 * 125.15999 * 179.97438 * 6 5 4 8 8 O 1.21649 * 119.99702 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99896 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99676 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.38302 * 119.93422 * 269.73174 * 11 10 9 13 13 C 1.38102 * 120.06669 * 179.72704 * 12 11 10 14 14 C 1.38869 * 119.93254 * 0.56725 * 13 12 11 15 15 O 1.35752 * 120.06990 * 179.68373 * 14 13 12 16 16 C 1.34835 * 117.00128 * 174.48187 * 15 14 13 17 17 H 1.07995 * 119.99963 * 5.06403 * 16 15 14 18 18 C 1.38654 * 120.00137 * 185.05283 * 16 15 14 19 19 N 1.31548 * 119.99964 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99882 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47393 * 89.99290 * 20 18 16 22 22 H 1.48502 * 109.47061 * 209.99695 * 20 18 16 23 23 H 1.48507 * 109.46975 * 329.99631 * 20 18 16 24 24 C 1.38883 * 119.86627 * 359.70176 * 14 13 12 25 25 C 1.38105 * 119.92713 * 0.02562 * 24 14 13 26 26 S 1.75828 * 125.16600 * 92.90243 * 3 2 1 27 27 H 1.08001 * 122.63992 * 359.97438 * 4 3 2 28 28 H 1.08004 * 122.62159 * 179.72937 * 5 4 3 29 29 H 0.97004 * 119.99906 * 359.97438 * 9 7 6 30 30 H 1.08994 * 109.47381 * 299.99762 * 10 9 7 31 31 H 1.08999 * 109.46637 * 60.00349 * 10 9 7 32 32 H 1.07999 * 119.96203 * 359.97053 * 12 11 10 33 33 H 1.07999 * 120.02891 * 180.26702 * 13 12 11 34 34 H 0.96999 * 120.00046 * 180.02562 * 19 18 16 35 35 H 1.07991 * 120.03876 * 179.97438 * 24 14 13 36 36 H 1.08001 * 119.96636 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3555 -0.0564 1.1164 5 6 4.7004 -0.0436 0.8689 6 6 5.0384 0.0246 -0.4534 7 6 6.4117 0.0521 -0.9754 8 8 7.3549 0.0134 -0.2082 9 7 6.6263 0.1201 -2.3043 10 6 7.9955 0.1480 -2.8247 11 6 7.9595 0.2241 -4.3293 12 6 7.9501 -0.9380 -5.0791 13 6 7.9114 -0.8716 -6.4579 14 6 7.8939 0.3639 -7.0919 15 8 7.8624 0.4325 -8.4473 16 6 7.7314 1.6574 -8.9954 17 1 7.7392 2.5345 -8.3654 18 6 7.5868 1.7910 -10.3679 19 7 7.4595 2.9861 -10.9026 20 14 7.5729 0.2738 -11.4576 21 1 6.1788 -0.2147 -11.6083 22 1 8.1237 0.6185 -12.7930 23 1 8.4054 -0.7884 -10.8379 24 6 7.9091 1.5291 -6.3364 25 6 7.9421 1.4561 -4.9577 26 16 3.5807 0.0739 -1.4355 27 1 2.9475 -0.1075 2.1150 28 1 5.4378 -0.0796 1.6572 29 1 5.8741 0.1505 -2.9161 30 1 8.5169 1.0195 -2.4289 31 1 8.5187 -0.7582 -2.5195 32 1 7.9690 -1.8985 -4.5855 33 1 7.8997 -1.7795 -7.0427 34 1 7.3580 3.0796 -11.8627 35 1 7.8960 2.4913 -6.8265 36 1 7.9543 2.3618 -4.3696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749370236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:14 Heat of formation + Delta-G solvation = 28.772525 kcal Electronic energy + Delta-G solvation = -22686.572893 eV Core-core repulsion = 19035.646952 eV Total energy + Delta-G solvation = -3650.925941 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09979 -39.31420 -38.29403 -37.13472 -36.65750 -34.69296 -32.54460 -31.20823 -30.44905 -29.94211 -26.86147 -25.70537 -24.47559 -22.26760 -21.72964 -21.22289 -20.74501 -19.41764 -18.04660 -17.46464 -17.26010 -16.69841 -15.79688 -15.63944 -15.06395 -14.97042 -14.58878 -14.45204 -14.17688 -14.07665 -13.95139 -13.68412 -13.48408 -13.24654 -13.13669 -12.82666 -12.65267 -12.56274 -12.32818 -12.08669 -11.58010 -11.53309 -11.06181 -10.90837 -10.83746 -10.39466 -10.27080 -9.55064 -9.46330 -9.22582 -9.17063 -9.00488 -8.45430 -7.56037 -6.54893 -4.22033 -0.45620 0.52587 1.10499 1.57768 1.84002 1.95776 2.37819 2.73610 2.87716 3.00184 3.14140 3.17732 3.31190 3.32938 4.12397 4.28532 4.46732 4.59946 4.68256 4.78775 4.96963 5.01515 5.24094 5.27520 5.45586 5.47909 5.63246 5.67415 5.73450 5.96424 6.16497 6.17840 6.38438 6.60469 6.81745 6.89725 7.04260 7.11172 7.24050 7.43154 7.65024 7.85909 7.88745 8.79420 9.39337 10.52090 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.002373 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.910014 B =11795.900017 C =12954.107687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.277 3.723 3 C -0.139 4.139 4 C -0.071 4.071 5 C -0.071 4.071 6 C -0.224 4.224 7 C 0.583 3.417 8 O -0.525 6.525 9 N -0.715 5.715 10 C 0.178 3.822 11 C -0.212 4.212 12 C -0.055 4.055 13 C -0.195 4.195 14 C 0.168 3.832 15 O -0.211 6.211 16 C -0.393 4.393 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.874 5.874 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.224 4.224 25 C -0.051 4.051 26 S 0.247 5.753 27 H 0.160 0.840 28 H 0.164 0.836 29 H 0.400 0.600 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.281 0.719 35 H 0.135 0.865 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 -6.404 20.329 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.039 4.039 3 C -0.261 4.261 4 C -0.108 4.108 5 C -0.103 4.103 6 C -0.347 4.347 7 C 0.367 3.633 8 O -0.403 6.403 9 N -0.366 5.366 10 C 0.057 3.943 11 C -0.214 4.214 12 C -0.074 4.074 13 C -0.215 4.215 14 C 0.114 3.886 15 O -0.115 6.115 16 C -0.468 4.468 17 H 0.126 0.874 18 C -0.139 4.139 19 N -0.510 5.510 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.183 1.183 24 C -0.243 4.243 25 C -0.070 4.070 26 S 0.515 5.485 27 H 0.177 0.823 28 H 0.182 0.818 29 H 0.235 0.765 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.319 -6.373 18.815 20.846 hybrid contribution 0.249 -0.363 0.542 0.699 sum -6.071 -6.736 19.358 21.376 Atomic orbital electron populations 1.81340 1.11050 1.08593 1.06122 1.24245 0.90863 0.94040 0.94763 1.20502 0.89442 1.17048 0.99065 1.20539 0.92054 0.99260 0.98908 1.20500 0.95908 0.98404 0.95526 1.25094 0.97484 1.13799 0.98350 1.17003 0.86288 0.77252 0.82719 1.90842 1.42329 1.50053 1.57067 1.46290 1.10471 1.73917 1.05894 1.20092 0.81370 1.02468 0.90381 1.19238 1.15189 0.93808 0.93132 1.20543 0.97154 0.96983 0.92685 1.20216 1.11605 0.95652 0.93977 1.19196 0.92295 0.93449 0.83630 1.83577 1.79210 1.33162 1.15536 1.20791 1.51531 0.81896 0.92559 0.87442 1.24493 0.95322 0.97904 0.96186 1.69635 1.46313 1.21875 1.13215 0.86176 0.79315 0.82349 0.79063 1.19766 1.20642 1.18290 1.21285 1.10093 0.99229 0.93730 1.20713 0.96064 0.96235 0.93952 1.84521 0.93284 1.66048 1.04604 0.82296 0.81818 0.76535 0.90850 0.90870 0.86676 0.86297 0.90833 0.84727 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.36 18.54 41.84 0.78 -3.59 16 2 C 0.28 2.43 15.81 -22.47 -0.36 2.08 16 3 C -0.14 -0.96 6.31 -38.20 -0.24 -1.20 16 4 C -0.07 -0.39 10.10 -40.66 -0.41 -0.80 16 5 C -0.07 -0.47 9.88 -40.69 -0.40 -0.87 16 6 C -0.22 -1.87 6.45 -36.63 -0.24 -2.11 16 7 C 0.58 6.41 7.79 -12.73 -0.10 6.31 16 8 O -0.52 -7.37 16.81 5.23 0.09 -7.28 16 9 N -0.71 -7.54 5.54 -62.72 -0.35 -7.89 16 10 C 0.18 2.10 5.80 -5.19 -0.03 2.07 16 11 C -0.21 -2.96 5.25 -104.57 -0.55 -3.51 16 12 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 13 C -0.20 -3.43 9.99 -39.40 -0.39 -3.83 16 14 C 0.17 3.52 6.65 -39.11 -0.26 3.26 16 15 O -0.21 -5.20 8.59 0.03 0.00 -5.20 16 16 C -0.39 -10.45 9.95 30.89 0.31 -10.14 16 17 H 0.11 2.91 5.44 -52.49 -0.29 2.63 16 18 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 19 N -0.87 -24.21 13.96 55.48 0.77 -23.44 16 20 Si 0.91 20.66 28.62 -169.99 -4.86 15.80 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.26 -5.92 7.11 56.52 0.40 -5.51 16 24 C -0.22 -4.34 9.17 -39.39 -0.36 -4.70 16 25 C -0.05 -0.79 9.69 -39.60 -0.38 -1.18 16 26 S 0.25 1.74 22.31 -107.50 -2.40 -0.66 16 27 H 0.16 0.47 8.06 -52.49 -0.42 0.04 16 28 H 0.16 0.95 8.04 -52.48 -0.42 0.53 16 29 H 0.40 3.78 7.56 -40.82 -0.31 3.47 16 30 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.14 2.78 5.64 -52.49 -0.30 2.49 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -30.12 347.09 -7.61 -37.74 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -2.98 Total: 3.43 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.90 Total: -14.14 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 1.20 Total: -34.91 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.86 Total: 15.80 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.40 Total: -0.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.12 -7.61 -37.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749370236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.508 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds