Wall clock time and date at job start Tue Mar 31 2020 15:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36736 * 125.16309 * 272.94371 * 3 2 1 5 5 C 1.36748 * 114.72489 * 179.97438 * 4 3 2 6 6 C 1.36654 * 114.76023 * 0.02562 * 5 4 3 7 7 C 1.46949 * 125.15999 * 179.97438 * 6 5 4 8 8 O 1.21649 * 119.99702 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99896 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99676 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.38302 * 119.93422 * 269.73174 * 11 10 9 13 13 C 1.38102 * 120.06669 * 179.72704 * 12 11 10 14 14 C 1.38869 * 119.93254 * 0.56725 * 13 12 11 15 15 O 1.35752 * 120.06990 * 179.68373 * 14 13 12 16 16 C 1.34835 * 117.00128 * 174.48187 * 15 14 13 17 17 H 1.07995 * 119.99963 * 5.06403 * 16 15 14 18 18 C 1.38654 * 120.00137 * 185.05283 * 16 15 14 19 19 N 1.31548 * 119.99964 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99882 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47393 * 89.99290 * 20 18 16 22 22 H 1.48502 * 109.47061 * 209.99695 * 20 18 16 23 23 H 1.48507 * 109.46975 * 329.99631 * 20 18 16 24 24 C 1.38883 * 119.86627 * 359.70176 * 14 13 12 25 25 C 1.38105 * 119.92713 * 0.02562 * 24 14 13 26 26 S 1.75828 * 125.16600 * 92.90243 * 3 2 1 27 27 H 1.08001 * 122.63992 * 359.97438 * 4 3 2 28 28 H 1.08004 * 122.62159 * 179.72937 * 5 4 3 29 29 H 0.97004 * 119.99906 * 359.97438 * 9 7 6 30 30 H 1.08994 * 109.47381 * 299.99762 * 10 9 7 31 31 H 1.08999 * 109.46637 * 60.00349 * 10 9 7 32 32 H 1.07999 * 119.96203 * 359.97053 * 12 11 10 33 33 H 1.07999 * 120.02891 * 180.26702 * 13 12 11 34 34 H 0.96999 * 120.00046 * 180.02562 * 19 18 16 35 35 H 1.07991 * 120.03876 * 179.97438 * 24 14 13 36 36 H 1.08001 * 119.96636 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3555 -0.0564 1.1164 5 6 4.7004 -0.0436 0.8689 6 6 5.0384 0.0246 -0.4534 7 6 6.4117 0.0521 -0.9754 8 8 7.3549 0.0134 -0.2082 9 7 6.6263 0.1201 -2.3043 10 6 7.9955 0.1480 -2.8247 11 6 7.9595 0.2241 -4.3293 12 6 7.9501 -0.9380 -5.0791 13 6 7.9114 -0.8716 -6.4579 14 6 7.8939 0.3639 -7.0919 15 8 7.8624 0.4325 -8.4473 16 6 7.7314 1.6574 -8.9954 17 1 7.7392 2.5345 -8.3654 18 6 7.5868 1.7910 -10.3679 19 7 7.4595 2.9861 -10.9026 20 14 7.5729 0.2738 -11.4576 21 1 6.1788 -0.2147 -11.6083 22 1 8.1237 0.6185 -12.7930 23 1 8.4054 -0.7884 -10.8379 24 6 7.9091 1.5291 -6.3364 25 6 7.9421 1.4561 -4.9577 26 16 3.5807 0.0739 -1.4355 27 1 2.9475 -0.1075 2.1150 28 1 5.4378 -0.0796 1.6572 29 1 5.8741 0.1505 -2.9161 30 1 8.5169 1.0195 -2.4289 31 1 8.5187 -0.7582 -2.5195 32 1 7.9690 -1.8985 -4.5855 33 1 7.8997 -1.7795 -7.0427 34 1 7.3580 3.0796 -11.8627 35 1 7.8960 2.4913 -6.8265 36 1 7.9543 2.3618 -4.3696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749370236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:13 Heat of formation + Delta-G solvation = 10.554455 kcal Electronic energy + Delta-G solvation = -22687.362888 eV Core-core repulsion = 19035.646952 eV Total energy + Delta-G solvation = -3651.715936 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13696 -40.66693 -39.00196 -38.52069 -37.39775 -35.75575 -34.45011 -32.16849 -31.83051 -30.94611 -28.03168 -27.01959 -25.65051 -23.71225 -22.58538 -22.05038 -21.78870 -20.24270 -19.80429 -19.10492 -18.01851 -17.43099 -16.80294 -16.62411 -16.38197 -16.08630 -15.77103 -15.64504 -15.46992 -15.26891 -14.99937 -14.75013 -14.46404 -14.34466 -14.27794 -14.06608 -13.85823 -13.59607 -13.20051 -13.18000 -13.07781 -12.59001 -12.46748 -12.33951 -12.08465 -11.93522 -11.33585 -11.29727 -10.90728 -10.28387 -9.90033 -9.82240 -9.73814 -9.10051 -8.50758 -6.23657 -1.05234 -0.05631 0.47955 0.53797 0.55865 0.99741 1.32915 1.35783 1.52348 1.71685 1.99569 2.10239 2.19511 2.27513 2.69287 2.78680 3.05602 3.14954 3.67003 3.87036 4.02548 4.08235 4.15209 4.31522 4.44969 4.55232 4.72378 4.81357 4.82804 4.95442 4.98093 5.20861 5.23295 5.26659 5.34413 5.54498 5.70980 5.79489 5.88884 6.19661 6.22966 6.37778 6.83642 7.01513 7.56830 8.60484 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.002373 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.910014 B =11795.900017 C =12954.107687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.300 3.700 3 C -0.146 4.146 4 C -0.051 4.051 5 C -0.060 4.060 6 C -0.242 4.242 7 C 0.588 3.412 8 O -0.557 6.557 9 N -0.712 5.712 10 C 0.182 3.818 11 C -0.178 4.178 12 C -0.044 4.044 13 C -0.193 4.193 14 C 0.129 3.871 15 O -0.242 6.242 16 C -0.399 4.399 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.261 1.261 24 C -0.239 4.239 25 C -0.049 4.049 26 S 0.255 5.745 27 H 0.189 0.811 28 H 0.175 0.825 29 H 0.406 0.594 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.131 0.869 34 H 0.285 0.715 35 H 0.109 0.891 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 -8.568 23.376 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.016 4.016 3 C -0.268 4.268 4 C -0.087 4.087 5 C -0.093 4.093 6 C -0.365 4.365 7 C 0.374 3.626 8 O -0.437 6.437 9 N -0.363 5.363 10 C 0.060 3.940 11 C -0.179 4.179 12 C -0.062 4.062 13 C -0.212 4.212 14 C 0.079 3.921 15 O -0.149 6.149 16 C -0.475 4.475 17 H 0.101 0.899 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.185 1.185 24 C -0.258 4.258 25 C -0.068 4.068 26 S 0.525 5.475 27 H 0.207 0.793 28 H 0.192 0.808 29 H 0.242 0.758 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.174 0.826 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.446 -8.551 21.895 24.374 hybrid contribution 0.305 0.250 0.077 0.401 sum -6.141 -8.301 21.972 24.277 Atomic orbital electron populations 1.81368 1.12389 1.10336 1.07566 1.24381 0.91009 0.92722 0.93462 1.20535 0.88534 1.18040 0.99671 1.20799 0.91205 0.96947 0.99779 1.20717 0.96588 0.96844 0.95129 1.24887 0.96611 1.15712 0.99252 1.17193 0.86941 0.76216 0.82261 1.90832 1.43610 1.51616 1.57684 1.46120 1.10103 1.73925 1.06190 1.20039 0.82323 1.03513 0.88135 1.19549 1.10800 0.92878 0.94655 1.20985 0.94915 0.98966 0.91342 1.20530 1.10563 0.94675 0.95420 1.19772 0.94083 0.95386 0.82823 1.83526 1.82422 1.31561 1.17414 1.20709 1.51632 0.82372 0.92786 0.89883 1.25277 0.95415 1.00678 0.97438 1.69722 1.49184 1.23667 1.13660 0.85234 0.79443 0.78694 0.77477 1.19049 1.19485 1.18531 1.21276 1.11223 0.97907 0.95423 1.20955 0.95147 0.98265 0.92402 1.84524 0.92623 1.66060 1.04335 0.79349 0.80754 0.75780 0.90424 0.89528 0.82586 0.85146 0.90565 0.87331 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.27 18.54 19.00 0.35 -8.92 16 2 C 0.30 4.71 15.81 88.33 1.40 6.10 16 3 C -0.15 -1.61 6.31 23.17 0.15 -1.46 16 4 C -0.05 -0.36 10.10 21.57 0.22 -0.15 16 5 C -0.06 -0.58 9.88 21.55 0.21 -0.37 16 6 C -0.24 -3.31 6.45 24.18 0.16 -3.15 16 7 C 0.59 11.15 7.79 86.52 0.67 11.83 16 8 O -0.56 -14.08 16.81 -4.19 -0.07 -14.15 16 9 N -0.71 -12.59 5.54 -470.58 -2.61 -15.20 16 10 C 0.18 3.55 5.80 85.63 0.50 4.05 16 11 C -0.18 -4.34 5.25 -19.83 -0.10 -4.45 16 12 C -0.04 -1.10 9.69 22.25 0.22 -0.88 16 13 C -0.19 -6.44 9.99 22.39 0.22 -6.22 16 14 C 0.13 5.51 6.65 22.58 0.15 5.66 16 15 O -0.24 -12.42 8.59 -22.82 -0.20 -12.61 16 16 C -0.40 -22.51 9.95 67.92 0.68 -21.83 16 17 H 0.08 4.90 5.44 -2.91 -0.02 4.89 16 18 C 0.01 0.60 5.49 84.83 0.47 1.06 16 19 N -0.92 -53.70 13.96 21.61 0.30 -53.40 16 20 Si 0.97 43.87 28.62 68.60 1.96 45.83 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 24 C -0.24 -9.48 9.17 22.39 0.21 -9.28 16 25 C -0.05 -1.46 9.69 22.25 0.22 -1.24 16 26 S 0.25 2.95 22.31 -56.49 -1.26 1.69 16 27 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 28 H 0.18 1.39 8.04 -2.91 -0.02 1.37 16 29 H 0.41 6.33 7.56 -92.70 -0.70 5.62 16 30 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 31 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 32 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.28 15.24 8.31 -92.71 -0.77 14.46 16 35 H 0.11 4.86 5.64 -2.92 -0.02 4.84 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -69.49 347.09 4.29 -65.19 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.46 Total: 11.90 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 5.35 Total: -20.33 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -1.95 Total: -77.52 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.27 Total: -26.77 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.96 Total: 45.83 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.26 Total: 1.69 kcal Total: -69.49 4.29 -65.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749370236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.749 kcal (2) G-P(sol) polarization free energy of solvation -69.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds