Wall clock time and date at job start Tue Mar 31 2020 15:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99957 * 2 1 4 4 H 1.48494 * 109.47072 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46536 * 30.00075 * 3 2 1 6 6 H 1.48498 * 109.47084 * 149.99634 * 3 2 1 7 7 C 1.37878 * 120.00627 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99587 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46610 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.96940 * 125.00265 * 10 9 7 12 12 C 1.35237 * 107.85941 * 179.73198 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40151 * 125.97476 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00099 * 0.02562 * 14 13 12 16 16 O 1.21297 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00092 * 180.02562 * 15 14 13 18 18 F 1.39893 * 109.47029 * 324.99605 * 17 15 14 19 19 F 1.39895 * 109.47151 * 84.99688 * 17 15 14 20 20 C 1.50703 * 109.46845 * 204.99610 * 17 15 14 21 21 N 1.29022 * 124.91965 * 299.69533 * 20 17 15 22 22 C 1.31782 * 117.12605 * 179.81263 * 21 20 17 23 23 C 1.33646 * 114.50033 * 0.47509 * 22 21 20 24 24 S 1.70975 * 124.91168 * 119.99845 * 20 17 15 25 25 N 1.31213 * 108.04995 * 359.97438 * 13 12 11 26 26 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46699 * 60.00648 * 9 7 2 28 28 H 1.08992 * 109.47326 * 299.99843 * 9 7 2 29 29 H 1.08002 * 126.07481 * 0.02562 * 11 10 9 30 30 H 1.08000 * 126.07181 * 180.26563 * 12 11 10 31 31 H 0.96994 * 120.00376 * 179.97438 * 14 13 12 32 32 H 1.08001 * 122.75213 * 180.22174 * 22 21 20 33 33 H 1.07997 * 126.04102 * 179.71661 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.8546 -3.1139 -0.8960 12 6 5.0605 -4.4044 -0.5480 13 6 4.2978 -4.6677 0.6012 14 7 4.2302 -5.8908 1.2821 15 6 4.9408 -6.9478 0.8410 16 8 5.6383 -6.8406 -0.1455 17 6 4.8677 -8.2632 1.5729 18 9 4.7394 -8.0265 2.9457 19 9 3.7607 -8.9883 1.1193 20 6 6.1253 -9.0523 1.3145 21 7 6.5295 -9.4377 0.1514 22 6 7.6569 -10.1183 0.1022 23 6 8.2308 -10.3267 1.2910 24 16 7.2193 -9.5726 2.5210 25 7 3.6594 -3.5683 0.9261 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8889 28 1 3.8746 -0.6799 -0.8911 29 1 5.2992 -2.6036 -1.7376 30 1 5.6984 -5.1078 -1.0626 31 1 3.6728 -5.9765 2.0712 32 1 8.0801 -10.4817 -0.8226 33 1 9.1516 -10.8630 1.4668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756493322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:38 Heat of formation + Delta-G solvation = 26.462121 kcal Electronic energy + Delta-G solvation = -24538.042031 eV Core-core repulsion = 20365.079125 eV Total energy + Delta-G solvation = -4172.962906 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.79106 -47.77506 -40.95097 -40.18769 -39.32213 -35.15324 -33.37767 -32.01156 -31.36664 -29.57893 -28.66273 -27.21801 -25.21265 -23.02207 -22.16420 -21.08287 -20.30173 -20.01655 -19.28303 -18.40598 -17.92113 -17.20091 -16.97947 -16.61069 -15.85385 -15.49503 -15.22240 -15.20374 -14.78973 -14.57592 -14.30449 -14.07360 -13.88554 -13.70230 -13.68995 -13.26683 -12.85555 -12.61525 -12.43066 -12.24407 -11.96492 -11.26425 -10.84706 -10.78178 -10.38431 -10.14817 -10.08863 -9.97890 -9.91381 -9.59507 -9.52738 -8.79695 -8.35816 -7.70912 -6.26172 -4.29255 0.00948 0.65626 1.15096 1.66036 2.00715 2.35376 2.63449 2.77937 3.11160 3.14989 3.20030 3.23835 3.45284 3.61581 4.08933 4.16490 4.20262 4.45820 4.70588 4.95400 5.00632 5.28123 5.52923 5.58268 5.91427 6.20863 6.28803 6.36720 6.58086 7.04092 7.15223 7.16963 7.31771 7.68110 7.71719 8.27571 8.40359 8.83063 9.28076 10.86412 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.030296 B = 0.002576 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.999090 B =10867.903034 C =11193.727097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.314 5.314 11 C 0.056 3.944 12 C -0.282 4.282 13 C 0.255 3.745 14 N -0.609 5.609 15 C 0.498 3.502 16 O -0.452 6.452 17 C 0.384 3.616 18 F -0.169 7.169 19 F -0.154 7.154 20 C -0.039 4.039 21 N -0.405 5.405 22 C 0.039 3.961 23 C -0.242 4.242 24 S 0.199 5.801 25 N -0.285 5.285 26 H 0.269 0.731 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.172 0.828 30 H 0.162 0.838 31 H 0.419 0.581 32 H 0.187 0.813 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.289 -19.814 4.590 26.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.096 5.096 11 C -0.094 4.094 12 C -0.313 4.313 13 C 0.002 3.998 14 N -0.257 5.257 15 C 0.275 3.725 16 O -0.320 6.320 17 C 0.339 3.661 18 F -0.150 7.150 19 F -0.135 7.135 20 C -0.318 4.318 21 N -0.119 5.119 22 C -0.113 4.113 23 C -0.382 4.382 24 S 0.453 5.547 25 N -0.116 5.116 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.190 0.810 30 H 0.179 0.821 31 H 0.256 0.744 32 H 0.203 0.797 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 16.453 -18.719 5.336 25.487 hybrid contribution 0.706 0.093 -0.920 1.163 sum 17.159 -18.625 4.416 25.707 Atomic orbital electron populations 1.69867 1.06167 1.27369 1.48890 1.24830 0.94870 0.98801 0.94192 0.86910 0.80431 0.83835 0.78941 1.19680 1.20488 1.18851 1.21093 0.87672 0.95790 1.52973 0.89573 1.20108 0.97600 0.72687 0.98388 1.48702 1.32108 1.10265 1.18480 1.22571 0.95719 0.94493 0.96603 1.21511 1.11337 0.97096 1.01352 1.18957 0.99733 0.86175 0.94933 1.42159 1.45802 1.07393 1.30375 1.20014 0.82245 0.84084 0.86145 1.90782 1.37188 1.81021 1.23056 1.18657 0.81712 0.89036 0.76668 1.93123 1.96027 1.94733 1.31073 1.93183 1.53222 1.78500 1.88546 1.26529 1.02429 1.08340 0.94452 1.65978 1.13422 1.08585 1.23942 1.21932 0.91059 0.98976 0.99338 1.27515 1.06607 1.08355 0.95724 1.84107 1.14362 1.45861 1.10375 1.77429 1.22852 0.95425 1.15888 0.92111 0.93827 0.93137 0.81042 0.82078 0.74374 0.79661 0.79505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 19.82 27.47 -169.99 -4.67 15.15 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 7 C -0.54 -14.95 9.79 -34.44 -0.34 -15.28 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.23 5.34 5.33 -5.19 -0.03 5.31 16 10 N -0.31 -6.92 3.67 -62.56 -0.23 -7.15 16 11 C 0.06 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.28 -5.30 9.61 -39.83 -0.38 -5.69 16 13 C 0.25 4.99 8.11 -154.40 -1.25 3.73 16 14 N -0.61 -9.63 5.38 -11.13 -0.06 -9.69 16 15 C 0.50 7.54 7.19 -10.98 -0.08 7.46 16 16 O -0.45 -7.82 12.83 5.54 0.07 -7.75 16 17 C 0.38 4.84 2.42 -29.03 -0.07 4.77 16 18 F -0.17 -1.82 15.95 2.25 0.04 -1.78 16 19 F -0.15 -2.03 17.03 2.25 0.04 -2.00 16 20 C -0.04 -0.47 6.06 -13.46 -0.08 -0.55 16 21 N -0.41 -5.08 9.76 -11.86 -0.12 -5.20 16 22 C 0.04 0.34 11.35 -19.18 -0.22 0.13 16 23 C -0.24 -1.58 11.37 29.12 0.33 -1.25 16 24 S 0.20 1.62 22.58 -107.50 -2.43 -0.80 16 25 N -0.29 -6.40 12.42 31.44 0.39 -6.01 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 28 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 29 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 30 H 0.16 2.92 5.91 -52.49 -0.31 2.61 16 31 H 0.42 5.60 8.38 -40.82 -0.34 5.26 16 32 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.19 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -33.87 319.44 -6.06 -39.94 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.27 Total: 4.53 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.41 Total: 1.51 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.76 Total: -53.61 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.07 Total: -7.75 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.07 Total: -3.78 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.67 Total: 15.15 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.43 Total: -0.80 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.87 -6.06 -39.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756493322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.399 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds