Wall clock time and date at job start Tue Mar 31 2020 15:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99957 * 2 1 4 4 H 1.48494 * 109.47072 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46536 * 30.00075 * 3 2 1 6 6 H 1.48498 * 109.47084 * 149.99634 * 3 2 1 7 7 C 1.37878 * 120.00627 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99587 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46610 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.96940 * 125.00265 * 10 9 7 12 12 C 1.35237 * 107.85941 * 179.73198 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40151 * 125.97476 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00099 * 0.02562 * 14 13 12 16 16 O 1.21297 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00092 * 180.02562 * 15 14 13 18 18 F 1.39893 * 109.47029 * 324.99605 * 17 15 14 19 19 F 1.39895 * 109.47151 * 84.99688 * 17 15 14 20 20 C 1.50703 * 109.46845 * 204.99610 * 17 15 14 21 21 N 1.29022 * 124.91965 * 299.69533 * 20 17 15 22 22 C 1.31782 * 117.12605 * 179.81263 * 21 20 17 23 23 C 1.33646 * 114.50033 * 0.47509 * 22 21 20 24 24 S 1.70975 * 124.91168 * 119.99845 * 20 17 15 25 25 N 1.31213 * 108.04995 * 359.97438 * 13 12 11 26 26 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46699 * 60.00648 * 9 7 2 28 28 H 1.08992 * 109.47326 * 299.99843 * 9 7 2 29 29 H 1.08002 * 126.07481 * 0.02562 * 11 10 9 30 30 H 1.08000 * 126.07181 * 180.26563 * 12 11 10 31 31 H 0.96994 * 120.00376 * 179.97438 * 14 13 12 32 32 H 1.08001 * 122.75213 * 180.22174 * 22 21 20 33 33 H 1.07997 * 126.04102 * 179.71661 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.8546 -3.1139 -0.8960 12 6 5.0605 -4.4044 -0.5480 13 6 4.2978 -4.6677 0.6012 14 7 4.2302 -5.8908 1.2821 15 6 4.9408 -6.9478 0.8410 16 8 5.6383 -6.8406 -0.1455 17 6 4.8677 -8.2632 1.5729 18 9 4.7394 -8.0265 2.9457 19 9 3.7607 -8.9883 1.1193 20 6 6.1253 -9.0523 1.3145 21 7 6.5295 -9.4377 0.1514 22 6 7.6569 -10.1183 0.1022 23 6 8.2308 -10.3267 1.2910 24 16 7.2193 -9.5726 2.5210 25 7 3.6594 -3.5683 0.9261 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8889 28 1 3.8746 -0.6799 -0.8911 29 1 5.2992 -2.6036 -1.7376 30 1 5.6984 -5.1078 -1.0626 31 1 3.6728 -5.9765 2.0712 32 1 8.0801 -10.4817 -0.8226 33 1 9.1516 -10.8630 1.4668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756493322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:37 Heat of formation + Delta-G solvation = 2.218075 kcal Electronic energy + Delta-G solvation = -24539.093332 eV Core-core repulsion = 20365.079125 eV Total energy + Delta-G solvation = -4174.014207 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.76663 -48.75579 -42.40772 -41.11399 -40.46038 -36.56830 -35.29062 -33.31060 -32.65790 -31.12538 -29.73204 -28.79388 -26.20336 -24.58840 -23.46423 -22.33362 -21.58453 -21.20716 -20.14735 -19.58008 -19.12312 -18.85113 -18.26858 -17.79756 -17.17060 -16.74417 -16.58704 -16.13535 -16.04084 -15.60479 -15.49228 -15.25440 -15.03835 -14.97705 -14.70179 -14.49917 -14.39880 -13.96948 -13.95350 -13.78237 -13.04177 -12.55308 -12.54771 -12.42028 -11.86476 -11.77965 -11.60468 -11.36472 -10.87242 -10.85115 -10.61512 -10.18759 -9.91191 -9.27819 -8.37532 -6.48508 -0.67956 -0.03570 0.38465 0.54494 0.83242 1.17529 1.37214 1.40197 1.49781 1.65219 1.72123 1.92376 2.04495 2.29247 2.39597 2.95062 3.03138 3.17494 3.74066 3.82038 4.09999 4.30585 4.39694 4.47840 4.61029 4.79300 4.79800 4.90906 5.02962 5.22575 5.64970 5.83580 5.95625 6.35003 6.41510 6.50406 6.57278 6.86291 7.14463 8.79598 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.030296 B = 0.002576 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.999090 B =10867.903034 C =11193.727097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.237 1.237 7 C -0.549 4.549 8 H 0.026 0.974 9 C 0.238 3.762 10 N -0.338 5.338 11 C 0.068 3.932 12 C -0.292 4.292 13 C 0.259 3.741 14 N -0.608 5.608 15 C 0.499 3.501 16 O -0.472 6.472 17 C 0.393 3.607 18 F -0.159 7.159 19 F -0.161 7.161 20 C -0.085 4.085 21 N -0.440 5.440 22 C 0.014 3.986 23 C -0.211 4.211 24 S 0.238 5.762 25 N -0.336 5.336 26 H 0.272 0.728 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.217 0.783 30 H 0.170 0.830 31 H 0.428 0.572 32 H 0.209 0.791 33 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.784 -19.887 4.597 29.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.160 1.160 7 C -0.587 4.587 8 H 0.044 0.956 9 C 0.118 3.882 10 N -0.120 5.120 11 C -0.080 4.080 12 C -0.322 4.322 13 C 0.005 3.995 14 N -0.258 5.258 15 C 0.278 3.722 16 O -0.342 6.342 17 C 0.349 3.651 18 F -0.139 7.139 19 F -0.142 7.142 20 C -0.361 4.361 21 N -0.156 5.156 22 C -0.137 4.137 23 C -0.351 4.351 24 S 0.491 5.509 25 N -0.167 5.167 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.233 0.767 30 H 0.187 0.813 31 H 0.267 0.733 32 H 0.225 0.775 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 19.955 -18.835 5.355 27.958 hybrid contribution -0.335 -0.115 -0.897 0.965 sum 19.620 -18.950 4.458 27.639 Atomic orbital electron populations 1.70052 1.08654 1.28849 1.50566 1.25940 0.95760 1.03617 0.93161 0.85607 0.79544 0.77074 0.80088 1.17702 1.20764 1.16004 1.21232 0.90525 0.93765 1.53223 0.95567 1.19963 0.94167 0.74028 0.99999 1.48600 1.33629 1.10070 1.19704 1.23294 0.93915 0.94367 0.96402 1.21723 1.11616 0.97600 1.01311 1.19295 0.98546 0.86592 0.95048 1.42291 1.46216 1.06651 1.30605 1.20529 0.81216 0.84589 0.85900 1.90745 1.37836 1.81635 1.23963 1.18342 0.82484 0.87596 0.76685 1.93138 1.96057 1.94653 1.30083 1.93164 1.53871 1.78416 1.88734 1.26322 1.03227 1.10598 0.95927 1.65940 1.15195 1.09460 1.25027 1.22338 0.90628 0.99554 1.01208 1.28055 1.06774 1.05999 0.94251 1.83933 1.12964 1.44717 1.09299 1.77345 1.24976 0.96672 1.17686 0.91866 0.93303 0.89637 0.76659 0.81309 0.73349 0.77467 0.75352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.96 40.13 27.47 68.60 1.88 42.01 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.24 -8.87 6.54 99.48 0.65 -8.22 16 7 C -0.55 -31.44 9.79 25.60 0.25 -31.19 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 9 C 0.24 10.75 5.33 85.63 0.46 11.21 16 10 N -0.34 -14.82 3.67 -351.85 -1.29 -16.11 16 11 C 0.07 2.43 11.44 83.52 0.96 3.39 16 12 C -0.29 -10.83 9.61 22.11 0.21 -10.62 16 13 C 0.26 10.31 8.11 133.33 1.08 11.39 16 14 N -0.61 -19.70 5.38 -307.50 -1.65 -21.36 16 15 C 0.50 15.31 7.19 87.66 0.63 15.94 16 16 O -0.47 -16.47 12.83 -3.08 -0.04 -16.51 16 17 C 0.39 9.96 2.42 29.10 0.07 10.04 16 18 F -0.16 -3.37 15.95 44.97 0.72 -2.66 16 19 F -0.16 -4.36 17.03 44.97 0.77 -3.59 16 20 C -0.09 -1.96 6.06 88.52 0.54 -1.43 16 21 N -0.44 -10.75 9.76 -191.44 -1.87 -12.62 16 22 C 0.01 0.22 11.35 83.66 0.95 1.17 16 23 C -0.21 -2.04 11.37 66.78 0.76 -1.28 16 24 S 0.24 3.36 22.58 -56.49 -1.28 2.08 16 25 N -0.34 -15.50 12.42 -54.45 -0.68 -16.17 16 26 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.05 2.15 7.20 -2.39 -0.02 2.13 16 28 H 0.09 3.27 7.50 -2.39 -0.02 3.25 16 29 H 0.22 5.43 8.06 -2.91 -0.02 5.41 16 30 H 0.17 6.00 5.91 -2.91 -0.02 5.99 16 31 H 0.43 11.90 8.38 -92.71 -0.78 11.13 16 32 H 0.21 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.23 0.14 8.06 -2.91 -0.02 0.12 16 Total: -1.00 -78.53 319.44 3.60 -74.94 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.37 Total: 17.82 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.36 Total: 9.88 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -5.19 Total: -123.97 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.04 Total: -16.51 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 1.48 Total: -6.25 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.88 Total: 42.01 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.28 Total: 2.08 kcal Total: -78.53 3.60 -74.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756493322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.154 kcal (2) G-P(sol) polarization free energy of solvation -78.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds