Wall clock time and date at job start Tue Mar 31 2020 14:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47157 * 2 1 4 4 N 1.29030 * 124.91414 * 90.01943 * 3 2 1 5 5 C 1.31781 * 117.12253 * 179.97438 * 4 3 2 6 6 C 1.33640 * 114.50217 * 0.02562 * 5 4 3 7 7 S 1.76204 * 126.04043 * 179.97438 * 6 5 4 8 8 O 1.42097 * 106.39775 * 336.46186 * 7 6 5 9 9 O 1.42092 * 106.40268 * 203.54059 * 7 6 5 10 10 N 1.65603 * 107.21814 * 90.00127 * 7 6 5 11 11 C 1.40565 * 120.00059 * 65.00016 * 10 7 6 12 12 C 1.40662 * 126.07640 * 315.04172 * 11 10 7 13 13 N 1.30929 * 108.40417 * 179.72031 * 12 11 10 14 14 N 1.40079 * 108.39921 * 0.38330 * 13 12 11 15 15 C 1.37307 * 126.07898 * 179.87922 * 14 13 12 16 16 H 1.08002 * 120.00270 * 179.69241 * 15 14 13 17 17 C 1.38978 * 119.99968 * 359.41118 * 15 14 13 18 18 N 1.31304 * 120.00019 * 0.27648 * 17 15 14 19 19 Si 1.86803 * 119.99981 * 180.27794 * 17 15 14 20 20 H 1.48499 * 109.47262 * 60.00394 * 19 17 15 21 21 H 1.48504 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 299.99985 * 19 17 15 23 23 C 1.35640 * 126.07700 * 135.00031 * 11 10 7 24 24 S 1.70979 * 124.91704 * 270.33695 * 3 2 1 25 25 H 1.08993 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47281 * 300.00396 * 1 2 3 27 27 H 1.09002 * 109.46860 * 59.99989 * 1 2 3 28 28 H 1.08992 * 109.47527 * 240.00107 * 2 1 3 29 29 H 1.09002 * 109.46860 * 120.00011 * 2 1 3 30 30 H 1.08002 * 122.75253 * 180.02562 * 5 4 3 31 31 H 0.96998 * 119.99644 * 245.00440 * 10 7 6 32 32 H 1.07998 * 125.79396 * 359.92976 * 12 11 10 33 33 H 0.97005 * 119.99967 * 179.97438 * 18 17 15 34 34 H 1.08000 * 126.24148 * 0.03713 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2789 2.1170 1.0581 5 6 2.7145 3.3478 0.8794 6 6 2.8421 3.7103 -0.4006 7 16 3.3961 5.2779 -0.9838 8 8 3.1474 6.2062 0.0629 9 8 2.8707 5.4266 -2.2956 10 7 5.0416 5.1868 -1.1467 11 6 5.6069 4.3160 -2.0944 12 6 5.2259 2.9816 -2.3241 13 7 5.9732 2.4977 -3.2841 14 7 6.8633 3.4970 -3.6978 15 6 7.8117 3.3776 -4.6836 16 1 8.4460 4.2171 -4.9272 17 6 7.9592 2.1747 -5.3638 18 7 7.1881 1.1541 -5.0676 19 14 9.2546 2.0099 -6.6996 20 1 10.5984 2.2611 -6.1197 21 1 9.2085 0.6384 -7.2673 22 1 8.9863 2.9991 -7.7741 23 6 6.6162 4.6133 -2.9503 24 16 2.3508 2.3463 -1.4020 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.9492 4.0094 1.7001 31 1 5.6153 5.7343 -0.5882 32 1 4.4468 2.4480 -1.8000 33 1 7.2908 0.3146 -5.5427 34 1 7.1305 5.5599 -3.0268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763375079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:31 Heat of formation + Delta-G solvation = 51.973650 kcal Electronic energy + Delta-G solvation = -23172.826831 eV Core-core repulsion = 19554.810574 eV Total energy + Delta-G solvation = -3618.016257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.045 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.78629 -39.65515 -36.92434 -35.61327 -34.64395 -34.25055 -33.10885 -30.43414 -29.85067 -27.50695 -25.95238 -24.92758 -23.06017 -21.27296 -20.54075 -20.11730 -18.98186 -18.41681 -17.74371 -16.98578 -16.73654 -15.77259 -15.54277 -15.17696 -14.89225 -14.57787 -14.32381 -13.94896 -13.76965 -13.44706 -13.23478 -12.61670 -12.23965 -12.07585 -11.99435 -11.83622 -11.78659 -11.72755 -11.65398 -11.57607 -11.26686 -11.20641 -11.04101 -10.62506 -10.36055 -9.72406 -9.62180 -9.41572 -9.01829 -8.78717 -8.27197 -7.10838 -6.67024 -4.38195 0.17953 0.66034 1.21774 1.58768 2.56741 2.90598 3.00292 3.03932 3.27453 3.45576 3.76702 3.86009 3.90884 4.05625 4.58293 4.69358 4.74870 4.91503 4.92055 4.94062 5.32188 5.35389 5.56658 5.66458 5.85811 5.88359 5.97730 6.21125 6.27064 6.67340 7.02052 7.15533 7.46241 7.48225 7.71973 8.02727 8.53661 9.21513 9.44072 10.29055 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014535 B = 0.004340 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.887450 B = 6449.629595 C = 7950.190012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C 0.059 3.941 4 N -0.493 5.493 5 C 0.180 3.820 6 C -0.843 4.843 7 S 2.730 3.270 8 O -0.964 6.964 9 O -0.943 6.943 10 N -1.015 6.015 11 C -0.053 4.053 12 C -0.073 4.073 13 N -0.242 5.242 14 N -0.138 5.138 15 C -0.322 4.322 16 H 0.119 0.881 17 C 0.048 3.952 18 N -0.771 5.771 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.265 1.265 23 C -0.056 4.056 24 S 0.286 5.714 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.188 0.812 31 H 0.412 0.588 32 H 0.151 0.849 33 H 0.277 0.723 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 -0.851 7.491 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.216 4.216 4 N -0.209 5.209 5 C 0.019 3.981 6 C -1.047 5.047 7 S 2.814 3.186 8 O -0.954 6.954 9 O -0.933 6.933 10 N -0.769 5.769 11 C -0.160 4.160 12 C -0.250 4.250 13 N -0.073 5.073 14 N 0.094 4.906 15 C -0.454 4.454 16 H 0.137 0.863 17 C -0.170 4.170 18 N -0.397 5.397 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.190 1.190 23 C -0.208 4.208 24 S 0.545 5.455 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.205 0.795 31 H 0.248 0.752 32 H 0.168 0.832 33 H 0.087 0.913 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.319 -2.029 5.827 10.357 hybrid contribution 1.053 0.783 1.280 1.833 sum -7.266 -1.246 7.107 10.240 Atomic orbital electron populations 1.21790 0.93079 1.02890 1.02846 1.20378 0.96960 0.87229 1.05107 1.27868 0.98390 1.02161 0.93157 1.66412 1.16640 1.05996 1.31819 1.21546 0.91025 0.91167 0.94332 1.37382 1.30417 1.29904 1.06954 1.01035 0.72433 0.71713 0.73445 1.93561 1.84510 1.58781 1.58593 1.93601 1.77967 1.84321 1.37386 1.52095 1.23878 1.53285 1.47680 1.16700 1.07516 0.90533 1.01278 1.23950 1.05002 0.92691 1.03373 1.78202 1.03769 1.11228 1.14129 1.44603 1.19872 1.05827 1.20295 1.19917 1.12648 1.00568 1.12300 0.86300 1.25646 0.97948 0.94779 0.98598 1.70183 1.32314 1.01826 1.35402 0.85862 0.79928 0.78377 0.79843 1.19094 1.20087 1.19016 1.21636 1.05421 0.94006 0.99701 1.84332 1.52807 1.00200 1.08156 0.91013 0.91852 0.92142 0.88849 0.88300 0.79510 0.75200 0.83195 0.91272 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.84 16 2 C -0.06 -0.55 6.52 -27.88 -0.18 -0.73 16 3 C 0.06 0.80 6.64 -13.45 -0.09 0.71 16 4 N -0.49 -7.27 10.54 -11.86 -0.13 -7.40 16 5 C 0.18 2.64 11.07 -19.18 -0.21 2.42 16 6 C -0.84 -13.66 5.62 29.12 0.16 -13.50 16 7 S 2.73 47.50 5.77 -107.50 -0.62 46.88 16 8 O -0.96 -16.82 17.84 -57.17 -1.02 -17.84 16 9 O -0.94 -19.51 17.68 -57.17 -1.01 -20.52 16 10 N -1.01 -17.72 5.93 32.32 0.19 -17.53 16 11 C -0.05 -1.14 6.41 -83.86 -0.54 -1.68 16 12 C -0.07 -1.72 11.10 -17.02 -0.19 -1.91 16 13 N -0.24 -6.54 10.40 30.81 0.32 -6.22 16 14 N -0.14 -3.63 3.74 -11.40 -0.04 -3.67 16 15 C -0.32 -8.15 10.25 -14.82 -0.15 -8.30 16 16 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 17 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 18 N -0.77 -20.35 11.81 55.49 0.66 -19.70 16 19 Si 0.94 18.13 29.55 -169.99 -5.02 13.11 16 20 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 21 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.06 -1.27 11.50 -16.36 -0.19 -1.46 16 24 S 0.29 4.45 19.87 -107.50 -2.14 2.32 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.41 5.84 8.96 -34.47 -0.31 5.53 16 32 H 0.15 3.14 3.69 -32.33 -0.12 3.02 16 33 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -33.47 324.56 -7.97 -41.44 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -2.93 Total: 8.45 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -1.12 Total: -24.21 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 1.00 Total: -54.51 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -2.03 Total: -38.36 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.11 kcal Atomic # 16 Polarization: 51.95 SS G_CDS: -2.76 Total: 49.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.47 -7.97 -41.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763375079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.414 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds