Wall clock time and date at job start Tue Mar 31 2020 14:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47157 * 2 1 4 4 N 1.29030 * 124.91414 * 90.01943 * 3 2 1 5 5 C 1.31781 * 117.12253 * 179.97438 * 4 3 2 6 6 C 1.33640 * 114.50217 * 0.02562 * 5 4 3 7 7 S 1.76204 * 126.04043 * 179.97438 * 6 5 4 8 8 O 1.42097 * 106.39775 * 336.46186 * 7 6 5 9 9 O 1.42092 * 106.40268 * 203.54059 * 7 6 5 10 10 N 1.65603 * 107.21814 * 90.00127 * 7 6 5 11 11 C 1.40565 * 120.00059 * 65.00016 * 10 7 6 12 12 C 1.40662 * 126.07640 * 315.04172 * 11 10 7 13 13 N 1.30929 * 108.40417 * 179.72031 * 12 11 10 14 14 N 1.40079 * 108.39921 * 0.38330 * 13 12 11 15 15 C 1.37307 * 126.07898 * 179.87922 * 14 13 12 16 16 H 1.08002 * 120.00270 * 179.69241 * 15 14 13 17 17 C 1.38978 * 119.99968 * 359.41118 * 15 14 13 18 18 N 1.31304 * 120.00019 * 0.27648 * 17 15 14 19 19 Si 1.86803 * 119.99981 * 180.27794 * 17 15 14 20 20 H 1.48499 * 109.47262 * 60.00394 * 19 17 15 21 21 H 1.48504 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 299.99985 * 19 17 15 23 23 C 1.35640 * 126.07700 * 135.00031 * 11 10 7 24 24 S 1.70979 * 124.91704 * 270.33695 * 3 2 1 25 25 H 1.08993 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47281 * 300.00396 * 1 2 3 27 27 H 1.09002 * 109.46860 * 59.99989 * 1 2 3 28 28 H 1.08992 * 109.47527 * 240.00107 * 2 1 3 29 29 H 1.09002 * 109.46860 * 120.00011 * 2 1 3 30 30 H 1.08002 * 122.75253 * 180.02562 * 5 4 3 31 31 H 0.96998 * 119.99644 * 245.00440 * 10 7 6 32 32 H 1.07998 * 125.79396 * 359.92976 * 12 11 10 33 33 H 0.97005 * 119.99967 * 179.97438 * 18 17 15 34 34 H 1.08000 * 126.24148 * 0.03713 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2789 2.1170 1.0581 5 6 2.7145 3.3478 0.8794 6 6 2.8421 3.7103 -0.4006 7 16 3.3961 5.2779 -0.9838 8 8 3.1474 6.2062 0.0629 9 8 2.8707 5.4266 -2.2956 10 7 5.0416 5.1868 -1.1467 11 6 5.6069 4.3160 -2.0944 12 6 5.2259 2.9816 -2.3241 13 7 5.9732 2.4977 -3.2841 14 7 6.8633 3.4970 -3.6978 15 6 7.8117 3.3776 -4.6836 16 1 8.4460 4.2171 -4.9272 17 6 7.9592 2.1747 -5.3638 18 7 7.1881 1.1541 -5.0676 19 14 9.2546 2.0099 -6.6996 20 1 10.5984 2.2611 -6.1197 21 1 9.2085 0.6384 -7.2673 22 1 8.9863 2.9991 -7.7741 23 6 6.6162 4.6133 -2.9503 24 16 2.3508 2.3463 -1.4020 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.9492 4.0094 1.7001 31 1 5.6153 5.7343 -0.5882 32 1 4.4468 2.4480 -1.8000 33 1 7.2908 0.3146 -5.5427 34 1 7.1305 5.5599 -3.0268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763375079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:30 Heat of formation + Delta-G solvation = 26.461648 kcal Electronic energy + Delta-G solvation = -23173.933114 eV Core-core repulsion = 19554.810574 eV Total energy + Delta-G solvation = -3619.122540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.045 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47913 -40.93705 -38.39115 -37.10248 -36.29728 -35.12923 -34.85134 -32.27228 -30.98000 -29.28531 -27.02306 -26.70330 -24.01239 -22.88823 -21.96973 -21.79551 -20.46436 -19.64394 -19.34229 -18.48148 -18.05824 -17.51979 -17.10917 -16.41005 -16.16758 -15.91215 -15.50752 -15.30183 -15.20126 -14.89615 -14.76487 -13.87375 -13.58247 -13.46081 -13.41374 -13.34545 -13.25356 -13.00312 -12.88041 -12.86751 -12.77514 -12.57917 -12.13320 -12.08012 -11.90144 -11.20997 -10.93337 -10.88603 -10.69440 -10.19636 -10.03379 -8.88270 -8.47803 -6.28070 -1.02458 -0.69892 0.00500 0.41014 1.29798 1.39740 1.42669 1.57389 1.73416 1.87801 2.12133 2.20273 2.58212 2.81523 2.90342 3.08482 3.38455 3.75090 4.07677 4.17545 4.18918 4.20688 4.51744 4.56268 4.62032 4.84745 4.89622 4.93247 4.98376 5.21902 5.26075 5.38824 5.89048 6.05129 6.29452 6.31352 6.72716 7.39999 7.58314 8.51202 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014535 B = 0.004340 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.887450 B = 6449.629595 C = 7950.190012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C 0.084 3.916 4 N -0.505 5.505 5 C 0.191 3.809 6 C -0.863 4.863 7 S 2.751 3.249 8 O -0.963 6.963 9 O -0.979 6.979 10 N -1.007 6.007 11 C -0.043 4.043 12 C -0.082 4.082 13 N -0.289 5.289 14 N -0.165 5.165 15 C -0.355 4.355 16 H 0.139 0.861 17 C 0.000 4.000 18 N -0.819 5.819 19 Si 1.016 2.984 20 H -0.255 1.255 21 H -0.276 1.276 22 H -0.257 1.257 23 C -0.063 4.063 24 S 0.239 5.761 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.214 0.786 31 H 0.429 0.571 32 H 0.171 0.829 33 H 0.279 0.721 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 -0.901 8.363 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.191 4.191 4 N -0.220 5.220 5 C 0.031 3.969 6 C -1.069 5.069 7 S 2.836 3.164 8 O -0.953 6.953 9 O -0.969 6.969 10 N -0.763 5.763 11 C -0.151 4.151 12 C -0.260 4.260 13 N -0.120 5.120 14 N 0.067 4.933 15 C -0.487 4.487 16 H 0.156 0.844 17 C -0.212 4.212 18 N -0.446 5.446 19 Si 0.835 3.165 20 H -0.179 1.179 21 H -0.200 1.200 22 H -0.181 1.181 23 C -0.215 4.215 24 S 0.498 5.502 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.131 0.869 30 H 0.231 0.769 31 H 0.267 0.733 32 H 0.187 0.813 33 H 0.089 0.911 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.120 -2.021 6.715 10.729 hybrid contribution 0.851 0.798 1.211 1.681 sum -7.269 -1.223 7.925 10.823 Atomic orbital electron populations 1.21798 0.91469 1.04479 1.02492 1.20687 0.98187 0.84904 1.06419 1.28561 0.95829 1.03045 0.91631 1.66527 1.17550 1.06154 1.31811 1.22053 0.89021 0.91369 0.94477 1.37066 1.32731 1.29489 1.07565 1.00179 0.71832 0.71769 0.72598 1.93556 1.84355 1.59255 1.58161 1.93561 1.78550 1.85265 1.39539 1.51973 1.24319 1.52821 1.47206 1.16741 1.06693 0.90435 1.01258 1.24430 1.04976 0.93767 1.02783 1.78105 1.05134 1.13039 1.15704 1.44877 1.20531 1.06485 1.21402 1.20589 1.13296 1.01873 1.12918 0.84380 1.26762 0.99864 0.93953 1.00634 1.70333 1.34564 1.02560 1.37160 0.84697 0.77050 0.78281 0.76503 1.17885 1.20024 1.18125 1.22317 1.05647 0.94506 0.99025 1.84516 1.54421 1.01246 1.10025 0.88494 0.92310 0.92410 0.87575 0.86867 0.76919 0.73271 0.81261 0.91137 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.31 16 2 C -0.06 -1.08 6.52 29.85 0.19 -0.89 16 3 C 0.08 2.17 6.64 88.52 0.59 2.76 16 4 N -0.51 -13.94 10.54 -191.44 -2.02 -15.96 16 5 C 0.19 5.27 11.07 83.66 0.93 6.20 16 6 C -0.86 -27.25 5.62 66.78 0.37 -26.87 16 7 S 2.75 93.59 5.77 -56.49 -0.33 93.26 16 8 O -0.96 -32.08 17.84 -128.00 -2.28 -34.36 16 9 O -0.98 -40.71 17.68 -128.00 -2.26 -42.98 16 10 N -1.01 -34.10 5.93 -51.65 -0.31 -34.40 16 11 C -0.04 -1.87 6.41 37.73 0.24 -1.62 16 12 C -0.08 -3.92 11.10 85.42 0.95 -2.97 16 13 N -0.29 -16.00 10.40 -56.45 -0.59 -16.59 16 14 N -0.16 -8.75 3.74 -189.98 -0.71 -9.47 16 15 C -0.36 -18.18 10.25 84.01 0.86 -17.32 16 16 H 0.14 6.18 7.83 -2.91 -0.02 6.16 16 17 C 0.00 0.02 5.50 84.95 0.47 0.49 16 18 N -0.82 -44.43 11.81 21.66 0.26 -44.17 16 19 Si 1.02 37.05 29.55 68.60 2.03 39.07 16 20 H -0.25 -8.73 7.11 99.48 0.71 -8.03 16 21 H -0.28 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 23 C -0.06 -2.88 11.50 83.35 0.96 -1.92 16 24 S 0.24 7.41 19.87 -56.49 -1.12 6.29 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.21 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.43 11.42 8.96 -96.75 -0.87 10.55 16 32 H 0.17 7.19 3.69 -15.73 -0.06 7.13 16 33 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 34 H 0.18 6.82 8.06 -2.91 -0.02 6.80 16 Total: -1.00 -73.17 324.56 -0.80 -73.97 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.26 Total: 28.80 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 6.27 Total: -43.47 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -3.37 Total: -120.59 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: -4.55 Total: -77.34 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 16 Polarization: 101.00 SS G_CDS: -1.45 Total: 99.55 kcal Total: -73.17 -0.80 -73.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763375079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.436 kcal (2) G-P(sol) polarization free energy of solvation -73.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds