Wall clock time and date at job start Tue Mar 31 2020 15:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47210 * 2 1 4 4 C 1.50698 * 109.46950 * 239.99995 * 2 1 3 5 5 N 1.28010 * 120.00348 * 120.00622 * 4 2 1 6 6 N 1.40095 * 120.00326 * 179.97438 * 5 4 2 7 7 C 1.34780 * 120.00107 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00122 * 359.97438 * 7 6 5 9 9 C 1.47666 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.39691 * 120.14430 * 359.72087 * 9 7 6 11 11 C 1.37822 * 119.87730 * 180.25327 * 10 9 7 12 12 C 1.38578 * 120.17160 * 0.04528 * 11 10 9 13 13 Cl 1.73599 * 119.85377 * 179.97438 * 12 11 10 14 14 C 1.38427 * 120.29322 * 359.95703 * 12 11 10 15 15 C 1.38077 * 120.11863 * 0.02562 * 14 12 11 16 16 Cl 1.73598 * 120.08650 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.46827 * 119.99902 * 2 1 3 18 18 C 1.50694 * 109.47089 * 294.99714 * 17 2 1 19 19 H 1.07998 * 120.00720 * 0.02562 * 18 17 2 20 20 C 1.37884 * 119.99665 * 180.02562 * 18 17 2 21 21 N 1.31507 * 120.00106 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99554 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47125 * 90.00379 * 22 20 18 24 24 H 1.48507 * 109.46780 * 209.99614 * 22 20 18 25 25 H 1.48495 * 109.47444 * 330.00043 * 22 20 18 26 26 H 1.09003 * 109.47221 * 59.99619 * 1 2 3 27 27 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46892 * 300.00358 * 1 2 3 29 29 H 1.08007 * 119.99599 * 300.00130 * 4 2 1 30 30 H 0.97008 * 119.99978 * 359.97438 * 6 5 4 31 31 H 1.08004 * 120.05925 * 0.25461 * 10 9 7 32 32 H 1.08002 * 119.91462 * 180.02562 * 11 10 9 33 33 H 1.08004 * 119.93979 * 180.02562 * 14 12 11 34 34 H 1.08999 * 109.47120 * 55.00343 * 17 2 1 35 35 H 1.09006 * 109.46854 * 174.99415 * 17 2 1 36 36 H 0.97005 * 120.00259 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7683 -0.0884 -2.0731 6 7 3.2357 -0.7490 -3.2167 7 6 4.0102 -0.0939 -4.1041 8 8 4.3030 1.0706 -3.9124 9 6 4.5024 -0.7900 -5.3098 10 6 4.1719 -2.1292 -5.5307 11 6 4.6386 -2.7751 -6.6552 12 6 5.4351 -2.0997 -7.5661 13 17 6.0190 -2.9215 -8.9795 14 6 5.7670 -0.7726 -7.3543 15 6 5.3058 -0.1137 -6.2319 16 17 5.7231 1.5503 -5.9667 17 6 2.0399 -0.7213 1.2493 18 6 1.6413 0.0571 2.4766 19 1 1.0800 0.9742 2.3758 20 6 1.9932 -0.4017 3.7283 21 7 2.6771 -1.5182 3.8511 22 14 1.4997 0.5635 5.2495 23 1 0.1725 0.0955 5.7238 24 1 2.5094 0.3535 6.3181 25 1 1.4248 2.0086 4.9162 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7713 -1.7444 -1.4013 30 1 3.0019 -1.6779 -3.3699 31 1 3.5518 -2.6574 -4.8215 32 1 4.3830 -3.8103 -6.8268 33 1 6.3879 -0.2517 -8.0681 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7996 1.2056 36 1 2.9251 -1.8408 4.7317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766000867.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:11 Heat of formation + Delta-G solvation = -4.714387 kcal Electronic energy + Delta-G solvation = -21529.268915 eV Core-core repulsion = 17872.414316 eV Total energy + Delta-G solvation = -3656.854598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43837 -39.76020 -38.40048 -37.78077 -37.37148 -36.37336 -34.41961 -33.13322 -32.04323 -31.35108 -28.84225 -26.20857 -25.23498 -24.18613 -23.25542 -21.90587 -20.81307 -19.47184 -18.62957 -18.08672 -17.89474 -16.87654 -16.50800 -16.39250 -16.31257 -15.63976 -15.10727 -14.96950 -14.92045 -14.76209 -14.44902 -13.74072 -13.67474 -13.40611 -13.16851 -13.08840 -12.78683 -12.72236 -12.51075 -12.33826 -12.23577 -12.22961 -12.08409 -11.76246 -11.32727 -11.25620 -11.01679 -10.76517 -10.49984 -10.24147 -10.04900 -9.79853 -8.15012 -6.22876 -0.72524 -0.13821 0.67579 0.93468 1.10768 1.40109 1.44473 1.45885 1.56067 1.72294 2.43070 2.46036 3.19872 3.25385 3.40047 3.76791 3.83302 3.88128 3.97481 4.03397 4.43171 4.45974 4.59058 4.61221 4.70234 4.79209 4.87562 5.01887 5.23312 5.24728 5.30881 5.50247 5.55526 5.74949 5.88754 6.04761 6.29217 6.48972 6.91683 7.37048 7.45065 8.96812 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.002097 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.902602 B =13351.730487 C =13889.354823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.035 4.035 3 H 0.059 0.941 4 C 0.115 3.885 5 N -0.289 5.289 6 N -0.576 5.576 7 C 0.563 3.437 8 O -0.526 6.526 9 C -0.136 4.136 10 C -0.051 4.051 11 C -0.101 4.101 12 C 0.000 4.000 13 Cl -0.039 7.039 14 C -0.111 4.111 15 C 0.011 3.989 16 Cl -0.040 7.040 17 C 0.041 3.959 18 C -0.528 4.528 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.958 3.042 23 H -0.270 1.270 24 H -0.288 1.288 25 H -0.267 1.267 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.137 0.863 30 H 0.399 0.601 31 H 0.173 0.827 32 H 0.181 0.819 33 H 0.165 0.835 34 H 0.013 0.987 35 H -0.016 1.016 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -6.806 -27.406 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.056 4.056 3 H 0.077 0.923 4 C -0.099 4.099 5 N -0.091 5.091 6 N -0.320 5.320 7 C 0.351 3.649 8 O -0.401 6.401 9 C -0.142 4.142 10 C -0.069 4.069 11 C -0.119 4.119 12 C -0.027 4.027 13 Cl -0.010 7.010 14 C -0.130 4.130 15 C -0.017 4.017 16 Cl -0.010 7.010 17 C 0.003 3.997 18 C -0.566 4.566 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.573 5.573 22 Si 0.783 3.217 23 H -0.195 1.195 24 H -0.214 1.214 25 H -0.192 1.192 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.241 0.759 31 H 0.191 0.809 32 H 0.199 0.801 33 H 0.182 0.818 34 H 0.031 0.969 35 H 0.003 0.997 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.644 -5.191 -27.616 28.335 hybrid contribution -0.134 -0.632 1.023 1.210 sum 3.510 -5.822 -26.593 27.448 Atomic orbital electron populations 1.21594 0.92093 1.02545 1.01631 1.20124 0.97311 0.98587 0.89625 0.92271 1.26538 0.91299 0.98993 0.93056 1.74491 1.12384 1.26147 0.96095 1.46731 1.51013 1.14368 1.19852 1.18291 0.77882 0.86312 0.82373 1.90875 1.56012 1.17325 1.75885 1.19691 1.03162 0.96153 0.95184 1.21581 0.97044 0.90732 0.97591 1.21463 0.95955 1.02473 0.92051 1.21165 0.98039 0.92438 0.91061 1.98424 1.86994 1.77812 1.37759 1.21041 1.01572 0.93587 0.96802 1.20989 0.97723 0.87609 0.95421 1.98445 1.91522 1.14971 1.96085 1.18954 0.94280 0.95416 0.91088 1.21597 1.34566 1.08712 0.91746 0.91771 1.25867 0.95265 0.96068 1.02450 1.70075 1.40077 1.22892 1.24276 0.85552 0.78077 0.79242 0.78822 1.19486 1.21377 1.19160 0.92175 0.91642 0.92216 0.84573 0.75930 0.80934 0.80136 0.81752 0.96890 0.99744 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.98 71.98 0.65 -3.26 16 2 C -0.04 -1.36 2.75 -11.54 -0.03 -1.40 16 3 H 0.06 2.52 8.11 -2.39 -0.02 2.50 16 4 C 0.12 3.72 9.65 88.66 0.86 4.58 16 5 N -0.29 -10.18 10.93 -50.46 -0.55 -10.73 16 6 N -0.58 -15.63 6.20 -175.71 -1.09 -16.72 16 7 C 0.56 16.66 7.88 86.73 0.68 17.34 16 8 O -0.53 -20.32 14.30 -4.00 -0.06 -20.38 16 9 C -0.14 -2.85 5.88 -20.07 -0.12 -2.96 16 10 C -0.05 -0.60 9.54 22.52 0.21 -0.39 16 11 C -0.10 -0.91 9.81 22.25 0.22 -0.69 16 12 C 0.00 0.00 6.33 22.40 0.14 0.15 16 13 Cl -0.04 -0.40 28.95 -2.72 -0.08 -0.48 16 14 C -0.11 -1.65 9.60 22.28 0.21 -1.44 16 15 C 0.01 0.23 6.35 22.60 0.14 0.37 16 16 Cl -0.04 -1.03 26.02 -2.72 -0.07 -1.10 16 17 C 0.04 2.01 4.43 29.85 0.13 2.14 16 18 C -0.53 -28.53 8.41 25.60 0.22 -28.32 16 19 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 20 C 0.00 0.06 5.46 84.66 0.46 0.52 16 21 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 22 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 2.11 6.95 -2.38 -0.02 2.09 16 29 H 0.14 3.34 8.00 -2.91 -0.02 3.31 16 30 H 0.40 6.98 6.66 -213.31 -1.42 5.56 16 31 H 0.17 0.99 6.40 -2.91 -0.02 0.97 16 32 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 33 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 35 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 36 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -73.09 345.77 3.95 -69.15 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -0.29 Total: 2.91 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 3.78 Total: -13.35 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -1.36 Total: -82.24 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.15 Total: -1.59 kcal Total: -73.09 3.95 -69.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766000867.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.431 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds