Wall clock time and date at job start Tue Mar 31 2020 15:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47322 * 2 1 4 4 C 1.50696 * 109.47055 * 120.00448 * 2 1 3 5 5 N 1.28014 * 119.99785 * 239.99853 * 4 2 1 6 6 N 1.40105 * 120.00028 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99999 * 179.97438 * 6 5 4 8 8 O 1.21601 * 120.00027 * 0.02562 * 7 6 5 9 9 C 1.47646 * 120.00084 * 179.97438 * 7 6 5 10 10 C 1.39770 * 120.16347 * 89.72685 * 9 7 6 11 11 Cl 1.73597 * 120.08833 * 0.02562 * 10 9 7 12 12 C 1.38096 * 119.82304 * 179.77098 * 10 9 7 13 13 C 1.38332 * 120.16832 * 0.52863 * 12 10 9 14 14 C 1.38331 * 120.34651 * 359.70288 * 13 12 10 15 15 C 1.38094 * 120.17160 * 0.04087 * 14 13 12 16 16 Cl 1.73596 * 120.08997 * 179.97438 * 15 14 13 17 17 C 1.53008 * 109.47063 * 240.00350 * 2 1 3 18 18 C 1.50695 * 109.47031 * 64.99861 * 17 2 1 19 19 H 1.08002 * 120.00413 * 0.02562 * 18 17 2 20 20 C 1.37879 * 119.99986 * 179.97438 * 18 17 2 21 21 N 1.31513 * 119.99815 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00123 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46688 * 60.00483 * 22 20 18 24 24 H 1.48505 * 109.46794 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47268 * 300.00652 * 22 20 18 26 26 H 1.08994 * 109.47054 * 299.99654 * 1 2 3 27 27 H 1.09002 * 109.47402 * 60.00164 * 1 2 3 28 28 H 1.09005 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00202 * 60.00181 * 4 2 1 30 30 H 0.96999 * 119.99953 * 0.02562 * 6 5 4 31 31 H 1.07996 * 119.91326 * 180.27459 * 12 10 9 32 32 H 1.08003 * 119.82905 * 179.72104 * 13 12 10 33 33 H 1.07998 * 119.91648 * 180.02562 * 14 13 12 34 34 H 1.08998 * 109.46900 * 184.99848 * 17 2 1 35 35 H 1.08999 * 109.47030 * 304.99864 * 17 2 1 36 36 H 0.97003 * 120.00084 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7683 -0.0884 2.0730 6 7 3.2358 -0.7491 3.2167 7 6 4.0111 -0.0942 4.1036 8 8 4.3045 1.0701 3.9115 9 6 4.5032 -0.7903 5.3091 10 6 5.7211 -1.4754 5.2765 11 17 6.6611 -1.5104 3.8175 12 6 6.1770 -2.1201 6.4094 13 6 5.4265 -2.0980 7.5713 14 6 4.2180 -1.4261 7.6101 15 6 3.7511 -0.7723 6.4869 16 17 2.2338 0.0697 6.5377 17 6 2.0400 -0.7212 -1.2494 18 6 1.6413 0.0571 -2.4766 19 1 1.0806 0.9747 -2.3757 20 6 1.9932 -0.4015 -3.7283 21 7 2.6764 -1.5186 -3.8512 22 14 1.4984 0.5629 -5.2497 23 1 2.0896 1.9238 -5.1870 24 1 1.9935 -0.1371 -6.4622 25 1 0.0184 0.6685 -5.3092 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7714 -1.7445 1.4012 30 1 3.0021 -1.6779 3.3698 31 1 7.1199 -2.6462 6.3871 32 1 5.7862 -2.6078 8.4529 33 1 3.6379 -1.4131 8.5210 34 1 3.1263 -0.7994 -1.2057 35 1 1.6054 -1.7198 -1.2953 36 1 2.9237 -1.8415 -4.7319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766019981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:15 Heat of formation + Delta-G solvation = 5.744461 kcal Electronic energy + Delta-G solvation = -21917.918425 eV Core-core repulsion = 18261.517357 eV Total energy + Delta-G solvation = -3656.401068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48410 -38.77291 -37.20237 -36.93270 -36.69917 -34.76136 -32.62097 -31.94786 -31.24762 -30.33387 -26.98065 -25.01827 -23.87275 -23.35040 -21.91141 -20.79664 -19.39003 -18.24371 -17.39076 -16.97578 -16.67733 -16.17357 -15.61872 -14.91198 -14.60832 -14.49707 -14.34943 -14.22494 -13.38490 -13.15713 -12.90935 -12.77702 -12.74379 -12.30444 -11.93269 -11.57048 -11.55778 -11.51637 -11.34752 -11.16419 -10.90227 -10.78588 -10.44927 -10.27497 -10.01237 -9.70606 -9.52386 -9.50221 -9.29101 -9.09781 -8.53051 -8.36012 -6.01228 -4.03091 0.26854 0.40379 1.34154 1.77374 2.01996 2.51056 2.82955 2.90194 3.34730 3.39112 3.41965 4.06821 4.20277 4.42816 4.46260 4.54183 4.75446 4.82509 5.17570 5.31106 5.35611 5.36682 5.40323 5.57666 5.88712 5.96569 6.05917 6.15033 6.45655 6.79204 6.95012 6.96616 7.13418 7.58885 7.62094 7.75367 7.96765 8.37120 8.54112 9.01859 9.60638 11.10217 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.002682 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.312114 B =10437.721027 C =11496.727637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.042 4.042 3 H 0.081 0.919 4 C 0.112 3.888 5 N -0.253 5.253 6 N -0.579 5.579 7 C 0.582 3.418 8 O -0.482 6.482 9 C -0.108 4.108 10 C 0.002 3.998 11 Cl -0.033 7.033 12 C -0.107 4.107 13 C -0.078 4.078 14 C -0.108 4.108 15 C 0.003 3.997 16 Cl -0.038 7.038 17 C 0.034 3.966 18 C -0.516 4.516 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.892 3.108 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.276 1.276 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.379 0.621 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 -5.635 26.176 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 H 0.099 0.901 4 C -0.103 4.103 5 N -0.055 5.055 6 N -0.319 5.319 7 C 0.365 3.635 8 O -0.353 6.353 9 C -0.114 4.114 10 C -0.026 4.026 11 Cl -0.004 7.004 12 C -0.126 4.126 13 C -0.097 4.097 14 C -0.127 4.127 15 C -0.025 4.025 16 Cl -0.009 7.009 17 C -0.004 4.004 18 C -0.554 4.554 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.202 1.202 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.216 0.784 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.503 -4.006 26.124 26.811 hybrid contribution -0.602 -0.940 -0.940 1.459 sum 3.901 -4.946 25.185 25.961 Atomic orbital electron populations 1.21672 0.94281 1.01439 1.01193 1.20408 0.95512 1.00221 0.90129 0.90096 1.26806 0.91416 0.97865 0.94173 1.74649 1.12290 1.23854 0.94668 1.46947 1.50738 1.13387 1.20784 1.17437 0.78273 0.86480 0.81269 1.90854 1.54730 1.15228 1.74497 1.19671 0.95446 1.01573 0.94722 1.20920 0.92383 0.98881 0.90402 1.98461 1.71001 1.97022 1.33877 1.21181 1.01198 0.99246 0.90938 1.21271 0.93182 0.97227 0.98011 1.21158 0.96987 0.97118 0.97397 1.20865 0.89631 0.98022 0.94010 1.98439 1.28147 1.75843 1.98461 1.19120 0.96528 0.95530 0.89225 1.21125 1.35205 1.08464 0.90629 0.92260 1.24999 0.95152 0.95072 0.99137 1.69949 1.38719 1.21168 1.23661 0.86650 0.78886 0.80172 0.82274 1.20182 1.21380 1.20194 0.94562 0.90704 0.93129 0.88044 0.78350 0.83396 0.83395 0.83456 0.96300 0.96065 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.99 37.16 0.33 -1.89 16 2 C -0.04 -0.83 2.75 -91.77 -0.25 -1.08 16 3 H 0.08 1.73 8.11 -51.93 -0.42 1.31 16 4 C 0.11 1.96 9.66 -13.87 -0.13 1.83 16 5 N -0.25 -4.75 10.93 32.67 0.36 -4.39 16 6 N -0.58 -9.09 6.25 30.49 0.19 -8.90 16 7 C 0.58 9.47 5.48 -12.42 -0.07 9.40 16 8 O -0.48 -9.88 17.44 5.28 0.09 -9.79 16 9 C -0.11 -1.33 5.64 -104.92 -0.59 -1.93 16 10 C 0.00 0.02 6.35 -39.06 -0.25 -0.23 16 11 Cl -0.03 -0.41 28.04 -51.86 -1.45 -1.86 16 12 C -0.11 -0.75 9.82 -39.60 -0.39 -1.14 16 13 C -0.08 -0.41 10.03 -39.51 -0.40 -0.81 16 14 C -0.11 -0.72 9.82 -39.60 -0.39 -1.11 16 15 C 0.00 0.03 6.35 -39.07 -0.25 -0.22 16 16 Cl -0.04 -0.42 28.04 -51.86 -1.45 -1.88 16 17 C 0.03 0.84 4.43 -27.88 -0.12 0.72 16 18 C -0.52 -13.98 8.41 -34.44 -0.29 -14.27 16 19 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 22 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.49 8.00 -52.49 -0.42 1.07 16 30 H 0.38 4.72 8.62 -182.59 -1.57 3.15 16 31 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 32 H 0.15 0.28 8.06 -52.48 -0.42 -0.15 16 33 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -33.59 351.80 -9.38 -42.97 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -5.24 Total: -2.94 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.89 Total: -9.21 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 1.28 Total: -38.93 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -2.91 Total: -3.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.59 -9.38 -42.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766019981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.715 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds