Wall clock time and date at job start Tue Mar 31 2020 15:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47322 * 2 1 4 4 C 1.50696 * 109.47055 * 120.00448 * 2 1 3 5 5 N 1.28014 * 119.99785 * 239.99853 * 4 2 1 6 6 N 1.40105 * 120.00028 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99999 * 179.97438 * 6 5 4 8 8 O 1.21601 * 120.00027 * 0.02562 * 7 6 5 9 9 C 1.47646 * 120.00084 * 179.97438 * 7 6 5 10 10 C 1.39770 * 120.16347 * 89.72685 * 9 7 6 11 11 Cl 1.73597 * 120.08833 * 0.02562 * 10 9 7 12 12 C 1.38096 * 119.82304 * 179.77098 * 10 9 7 13 13 C 1.38332 * 120.16832 * 0.52863 * 12 10 9 14 14 C 1.38331 * 120.34651 * 359.70288 * 13 12 10 15 15 C 1.38094 * 120.17160 * 0.04087 * 14 13 12 16 16 Cl 1.73596 * 120.08997 * 179.97438 * 15 14 13 17 17 C 1.53008 * 109.47063 * 240.00350 * 2 1 3 18 18 C 1.50695 * 109.47031 * 64.99861 * 17 2 1 19 19 H 1.08002 * 120.00413 * 0.02562 * 18 17 2 20 20 C 1.37879 * 119.99986 * 179.97438 * 18 17 2 21 21 N 1.31513 * 119.99815 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00123 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46688 * 60.00483 * 22 20 18 24 24 H 1.48505 * 109.46794 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47268 * 300.00652 * 22 20 18 26 26 H 1.08994 * 109.47054 * 299.99654 * 1 2 3 27 27 H 1.09002 * 109.47402 * 60.00164 * 1 2 3 28 28 H 1.09005 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00202 * 60.00181 * 4 2 1 30 30 H 0.96999 * 119.99953 * 0.02562 * 6 5 4 31 31 H 1.07996 * 119.91326 * 180.27459 * 12 10 9 32 32 H 1.08003 * 119.82905 * 179.72104 * 13 12 10 33 33 H 1.07998 * 119.91648 * 180.02562 * 14 13 12 34 34 H 1.08998 * 109.46900 * 184.99848 * 17 2 1 35 35 H 1.08999 * 109.47030 * 304.99864 * 17 2 1 36 36 H 0.97003 * 120.00084 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7683 -0.0884 2.0730 6 7 3.2358 -0.7491 3.2167 7 6 4.0111 -0.0942 4.1036 8 8 4.3045 1.0701 3.9115 9 6 4.5032 -0.7903 5.3091 10 6 5.7211 -1.4754 5.2765 11 17 6.6611 -1.5104 3.8175 12 6 6.1770 -2.1201 6.4094 13 6 5.4265 -2.0980 7.5713 14 6 4.2180 -1.4261 7.6101 15 6 3.7511 -0.7723 6.4869 16 17 2.2338 0.0697 6.5377 17 6 2.0400 -0.7212 -1.2494 18 6 1.6413 0.0571 -2.4766 19 1 1.0806 0.9747 -2.3757 20 6 1.9932 -0.4015 -3.7283 21 7 2.6764 -1.5186 -3.8512 22 14 1.4984 0.5629 -5.2497 23 1 2.0896 1.9238 -5.1870 24 1 1.9935 -0.1371 -6.4622 25 1 0.0184 0.6685 -5.3092 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7714 -1.7445 1.4012 30 1 3.0021 -1.6779 3.3698 31 1 7.1199 -2.6462 6.3871 32 1 5.7862 -2.6078 8.4529 33 1 3.6379 -1.4131 8.5210 34 1 3.1263 -0.7994 -1.2057 35 1 1.6054 -1.7198 -1.2953 36 1 2.9237 -1.8415 -4.7319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766019981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:14 Heat of formation + Delta-G solvation = -15.138047 kcal Electronic energy + Delta-G solvation = -21918.823959 eV Core-core repulsion = 18261.517357 eV Total energy + Delta-G solvation = -3657.306602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45276 -39.79682 -38.41872 -38.00732 -37.48643 -36.40888 -34.41752 -33.13663 -31.88256 -31.56951 -28.87176 -26.27928 -25.28923 -24.00070 -23.42428 -22.00743 -20.84210 -19.41029 -18.70240 -18.11003 -17.92377 -17.48168 -16.57003 -16.47856 -15.61333 -15.59849 -15.38217 -15.15183 -14.93046 -14.82516 -14.47494 -13.74610 -13.59192 -13.58069 -13.24998 -12.86672 -12.80900 -12.75266 -12.52194 -12.35289 -12.29151 -12.25857 -12.19672 -11.81501 -11.53567 -11.34834 -11.27473 -10.94439 -10.51281 -10.24199 -9.97345 -9.96691 -8.16134 -6.24635 -0.43252 -0.21875 0.57279 0.68995 1.01304 1.35712 1.43810 1.46065 1.53235 1.60169 2.20452 2.44776 3.11500 3.18524 3.60399 3.76506 3.79890 3.96445 4.02114 4.16633 4.19760 4.43359 4.55375 4.63813 4.76864 4.92002 4.97606 5.04807 5.19837 5.26972 5.41450 5.46919 5.52726 5.71322 5.86236 5.92046 6.26618 6.34447 6.89470 7.25698 7.43361 8.95708 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.002682 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.312114 B =10437.721027 C =11496.727637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.034 4.034 3 H 0.061 0.939 4 C 0.117 3.883 5 N -0.286 5.286 6 N -0.570 5.570 7 C 0.584 3.416 8 O -0.537 6.537 9 C -0.135 4.135 10 C -0.013 4.013 11 Cl -0.061 7.061 12 C -0.098 4.098 13 C -0.053 4.053 14 C -0.096 4.096 15 C -0.009 4.009 16 Cl -0.056 7.056 17 C 0.042 3.958 18 C -0.530 4.530 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.933 5.933 22 Si 0.959 3.041 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.262 1.262 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.396 0.604 31 H 0.176 0.824 32 H 0.198 0.802 33 H 0.179 0.821 34 H -0.017 1.017 35 H 0.011 0.989 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -6.815 28.800 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.055 4.055 3 H 0.079 0.921 4 C -0.098 4.098 5 N -0.088 5.088 6 N -0.311 5.311 7 C 0.371 3.629 8 O -0.411 6.411 9 C -0.141 4.141 10 C -0.040 4.040 11 Cl -0.032 7.032 12 C -0.116 4.116 13 C -0.071 4.071 14 C -0.114 4.114 15 C -0.037 4.037 16 Cl -0.027 7.027 17 C 0.004 3.996 18 C -0.568 4.568 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.574 5.574 22 Si 0.784 3.216 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.187 1.187 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.236 0.764 31 H 0.193 0.807 32 H 0.215 0.785 33 H 0.196 0.804 34 H 0.001 0.999 35 H 0.030 0.970 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.161 -5.209 28.762 29.525 hybrid contribution -0.440 -0.638 -1.595 1.773 sum 3.721 -5.848 27.167 28.038 Atomic orbital electron populations 1.21590 0.91988 1.02519 1.01703 1.20138 0.97370 0.98604 0.89399 0.92080 1.26595 0.91141 0.98892 0.93129 1.74517 1.12470 1.25888 0.95954 1.46859 1.50390 1.14099 1.19791 1.18138 0.76971 0.85964 0.81860 1.90808 1.56652 1.17698 1.75980 1.19424 0.97057 1.03917 0.93691 1.21105 0.91893 1.00348 0.90679 1.98449 1.71574 1.97224 1.35948 1.21601 1.02196 0.97847 0.89950 1.21856 0.91525 0.95107 0.98586 1.21612 0.97507 0.95310 0.96994 1.21052 0.89148 0.99002 0.94470 1.98431 1.29289 1.76466 1.98478 1.18942 0.94199 0.95388 0.91104 1.21560 1.34784 1.08738 0.91685 0.91664 1.25883 0.95193 0.96040 1.02492 1.70080 1.40075 1.22861 1.24379 0.85592 0.79189 0.78574 0.78264 1.19829 1.21184 1.18706 0.92198 0.91981 0.91758 0.84978 0.76413 0.80676 0.78505 0.80354 0.99870 0.97021 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.99 71.98 0.65 -3.44 16 2 C -0.03 -1.38 2.75 -11.54 -0.03 -1.41 16 3 H 0.06 2.70 8.11 -2.39 -0.02 2.68 16 4 C 0.12 4.12 9.66 88.66 0.86 4.98 16 5 N -0.29 -11.02 10.93 -50.47 -0.55 -11.57 16 6 N -0.57 -18.28 6.25 -175.72 -1.10 -19.38 16 7 C 0.58 19.57 5.48 86.73 0.48 20.05 16 8 O -0.54 -23.12 17.44 -4.03 -0.07 -23.19 16 9 C -0.13 -3.27 5.64 -20.05 -0.11 -3.39 16 10 C -0.01 -0.25 6.35 22.61 0.14 -0.11 16 11 Cl -0.06 -1.52 28.04 -2.72 -0.08 -1.60 16 12 C -0.10 -1.02 9.82 22.26 0.22 -0.80 16 13 C -0.05 -0.28 10.03 22.31 0.22 -0.05 16 14 C -0.10 -0.90 9.82 22.26 0.22 -0.68 16 15 C -0.01 -0.17 6.35 22.60 0.14 -0.03 16 16 Cl -0.06 -1.20 28.04 -2.72 -0.08 -1.28 16 17 C 0.04 2.13 4.43 29.85 0.13 2.26 16 18 C -0.53 -29.23 8.41 25.60 0.22 -29.01 16 19 H 0.07 3.44 7.06 -2.91 -0.02 3.42 16 20 C 0.00 0.09 5.46 84.66 0.46 0.55 16 21 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 22 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 2.27 6.95 -2.39 -0.02 2.25 16 28 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.13 3.77 8.00 -2.91 -0.02 3.74 16 30 H 0.40 9.87 8.62 -213.32 -1.84 8.03 16 31 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 32 H 0.20 -0.75 8.06 -2.91 -0.02 -0.77 16 33 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 34 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -77.51 351.80 3.31 -74.20 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -0.72 Total: 3.65 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 3.59 Total: -11.07 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -1.36 Total: -86.83 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.07 Total: -23.19 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 17 Polarization: -2.73 SS G_CDS: -0.15 Total: -2.88 kcal Total: -77.51 3.31 -74.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766019981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.058 kcal (2) G-P(sol) polarization free energy of solvation -77.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds